Wall clock time and date at job start Fri Apr 10 2020 14:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00167 * 2 1 4 4 H 1.48494 * 109.47081 * 275.00261 * 3 2 1 5 5 H 1.48504 * 109.46935 * 35.00051 * 3 2 1 6 6 H 1.48499 * 109.47221 * 154.99939 * 3 2 1 7 7 C 1.37878 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00120 * 354.43102 * 7 2 1 9 9 C 1.50695 * 119.99862 * 174.43137 * 7 2 1 10 10 C 1.53001 * 115.54830 * 303.91580 * 9 7 2 11 11 N 1.46899 * 109.47549 * 280.25233 * 10 9 7 12 12 C 1.46417 * 110.99572 * 58.21256 * 11 10 9 13 13 C 1.53276 * 109.77581 * 161.82095 * 12 11 10 14 14 S 1.81898 * 108.41133 * 62.16171 * 13 12 11 15 15 C 1.81774 * 102.00642 * 308.78128 * 14 13 12 16 16 H 1.08995 * 109.62166 * 170.92439 * 15 14 13 17 17 C 1.52951 * 109.51626 * 291.23646 * 15 14 13 18 18 C 1.53054 * 109.31299 * 179.20176 * 17 15 14 19 19 C 1.52968 * 110.06358 * 301.16445 * 18 17 15 20 20 C 1.53011 * 109.63056 * 59.19802 * 19 18 17 21 21 C 1.46610 * 111.00045 * 292.10516 * 11 10 9 22 22 H 1.09000 * 109.60454 * 77.31686 * 21 11 10 23 23 C 1.53000 * 117.52169 * 89.61728 * 9 7 2 24 24 C 1.53001 * 117.50278 * 158.24992 * 9 7 2 25 25 H 0.97006 * 120.00035 * 0.02562 * 1 2 3 26 26 H 1.09008 * 109.47139 * 160.25515 * 10 9 7 27 27 H 1.08998 * 109.47257 * 40.25586 * 10 9 7 28 28 H 1.08997 * 109.42295 * 281.91427 * 12 11 10 29 29 H 1.09004 * 109.42178 * 41.79349 * 12 11 10 30 30 H 1.08998 * 109.67896 * 181.88581 * 13 12 11 31 31 H 1.08996 * 109.68121 * 302.43344 * 13 12 11 32 32 H 1.08997 * 109.49941 * 299.70956 * 17 15 14 33 33 H 1.08995 * 109.49686 * 59.80977 * 17 15 14 34 34 H 1.08999 * 109.45225 * 180.83139 * 18 17 15 35 35 H 1.08997 * 108.96300 * 61.18170 * 18 17 15 36 36 H 1.09000 * 109.44149 * 299.14626 * 19 18 17 37 37 H 1.09002 * 109.41352 * 179.22946 * 19 18 17 38 38 H 1.09009 * 109.51244 * 179.86937 * 20 19 18 39 39 H 1.08994 * 109.55618 * 59.73937 * 20 19 18 40 40 H 1.08997 * 117.50023 * 214.96859 * 23 9 7 41 41 H 1.09000 * 117.49441 * 359.97438 * 23 9 7 42 42 H 1.09002 * 117.49575 * 359.97438 * 24 9 7 43 43 H 1.08995 * 117.50077 * 144.99153 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3910 2.1074 -1.3947 5 1 1.5035 2.6198 0.8031 6 1 3.5956 1.4119 0.5917 7 6 2.0045 -1.1941 0.0005 8 1 1.4683 -2.1271 0.0917 9 6 3.5061 -1.1973 -0.1261 10 6 4.0658 -0.4854 -1.3594 11 7 3.9542 -1.3690 -2.5276 12 6 2.5621 -1.7590 -2.7593 13 6 2.4013 -2.2813 -4.1913 14 16 3.4411 -3.7614 -4.3832 15 6 5.0503 -3.1744 -3.7749 16 1 5.7366 -4.0163 -3.6841 17 6 5.6231 -2.1480 -4.7536 18 6 6.9683 -1.6422 -4.2270 19 6 6.7872 -1.0109 -2.8454 20 6 6.2101 -2.0469 -1.8785 21 6 4.8504 -2.5224 -2.4016 22 1 4.4184 -3.2476 -1.7120 23 6 4.3246 -1.1233 1.1644 24 6 4.2550 -2.4331 0.3767 25 1 -0.4850 0.8401 -0.0004 26 1 5.1136 -0.2365 -1.1910 27 1 3.4997 0.4284 -1.5396 28 1 2.2830 -2.5422 -2.0545 29 1 1.9145 -0.8941 -2.6151 30 1 1.3581 -2.5398 -4.3728 31 1 2.7187 -1.5156 -4.8991 32 1 5.7570 -2.6121 -5.7306 33 1 4.9364 -1.3061 -4.8412 34 1 7.3716 -0.8996 -4.9154 35 1 7.6588 -2.4825 -4.1543 36 1 6.1047 -0.1643 -2.9200 37 1 7.7529 -0.6670 -2.4749 38 1 6.0840 -1.5957 -0.8942 39 1 6.8895 -2.8961 -1.8055 40 1 5.2618 -0.5675 1.1349 41 1 3.7769 -1.0718 2.1054 42 1 3.6615 -3.2437 0.7996 43 1 5.1462 -2.7390 -0.1710 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602786251.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:13 Heat of formation + Delta-G solvation = 23.594102 kcal Electronic energy + Delta-G solvation = -22395.678826 eV Core-core repulsion = 19567.213516 eV Total energy + Delta-G solvation = -2828.465311 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 281.151 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.43446 -38.19407 -35.95600 -34.35623 -32.54775 -31.40730 -30.51841 -27.92791 -26.30675 -23.98576 -23.49733 -23.07100 -22.38174 -20.94023 -19.60877 -18.41565 -17.85994 -17.16578 -16.47177 -16.29282 -15.95918 -15.66509 -15.22948 -14.85440 -14.62507 -14.25064 -14.18112 -13.77769 -13.50366 -13.36816 -13.19090 -13.09745 -12.95742 -12.63962 -12.43977 -12.22996 -12.00192 -11.98155 -11.72814 -11.60816 -11.38615 -11.14208 -11.05509 -10.88072 -10.61514 -10.42086 -10.21738 -9.09806 -8.61156 -8.28511 -6.27038 0.90865 1.30988 1.38182 1.49612 1.60359 2.35117 2.85721 3.08535 3.37642 3.71745 3.90787 4.02279 4.08218 4.15736 4.22407 4.30575 4.32407 4.36941 4.43782 4.50177 4.53517 4.56175 4.63429 4.72266 4.83241 4.87688 4.90811 4.96244 5.07789 5.13187 5.16978 5.24521 5.32333 5.36496 5.39408 5.41433 5.44423 5.50061 5.68150 5.70433 6.13739 6.27239 6.37561 6.73262 7.34248 8.86928 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.008200 C = 0.007102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.404205 B = 3413.717618 C = 3941.672127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.026 3.974 3 Si 0.930 3.070 4 H -0.271 1.271 5 H -0.305 1.305 6 H -0.229 1.229 7 C -0.467 4.467 8 H 0.022 0.978 9 C -0.047 4.047 10 C 0.088 3.912 11 N -0.518 5.518 12 C 0.083 3.917 13 C -0.062 4.062 14 S -0.310 6.310 15 C -0.023 4.023 16 H 0.118 0.882 17 C -0.097 4.097 18 C -0.103 4.103 19 C -0.114 4.114 20 C -0.123 4.123 21 C 0.084 3.916 22 H 0.046 0.954 23 C -0.191 4.191 24 C -0.183 4.183 25 H 0.263 0.737 26 H 0.094 0.906 27 H 0.046 0.954 28 H 0.031 0.969 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.217 -2.202 -8.355 18.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.172 4.172 3 Si 0.756 3.244 4 H -0.197 1.197 5 H -0.234 1.234 6 H -0.151 1.151 7 C -0.505 4.505 8 H 0.040 0.960 9 C -0.049 4.049 10 C -0.040 4.040 11 N -0.241 5.241 12 C -0.047 4.047 13 C -0.211 4.211 14 S -0.081 6.081 15 C -0.151 4.151 16 H 0.136 0.864 17 C -0.137 4.137 18 C -0.143 4.143 19 C -0.151 4.151 20 C -0.162 4.162 21 C -0.026 4.026 22 H 0.064 0.936 23 C -0.230 4.230 24 C -0.220 4.220 25 H 0.072 0.928 26 H 0.112 0.888 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.867 -2.913 -9.200 18.571 hybrid contribution -1.051 1.327 1.594 2.326 sum 14.816 -1.586 -7.606 16.729 Atomic orbital electron populations 1.70053 1.08237 1.27758 1.52480 1.25635 0.95000 1.02347 0.94203 0.86058 0.80923 0.79168 0.78207 1.19707 1.23351 1.15137 1.20330 0.89436 0.92080 1.48621 0.95983 1.20034 0.92238 0.99468 0.93139 1.22011 1.00206 0.94373 0.87360 1.61588 1.06283 1.18129 1.38138 1.21852 0.89903 0.99581 0.93319 1.23508 1.01035 0.96732 0.99809 1.86634 1.11564 1.24024 1.85831 1.23375 0.93332 1.01323 0.97115 0.86393 1.21659 0.97614 0.97521 0.96871 1.21450 0.95900 1.00612 0.96299 1.21489 1.00659 0.98014 0.94976 1.22013 0.94242 1.00501 0.99450 1.22012 0.94151 0.91889 0.94530 0.93622 1.23080 1.01750 1.01363 0.96782 1.23265 1.02779 0.91071 1.04851 0.92800 0.88826 0.93540 0.95094 0.92403 0.88243 0.88825 0.91031 0.92189 0.90917 0.91005 0.92365 0.90667 0.90908 0.89531 0.88408 0.91482 0.92217 0.86120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.61 13.96 21.45 0.30 -57.31 16 2 C 0.03 1.43 5.27 84.65 0.45 1.88 16 3 Si 0.93 43.01 24.59 68.60 1.69 44.70 16 4 H -0.27 -12.12 6.94 99.48 0.69 -11.43 16 5 H -0.31 -14.53 7.11 99.48 0.71 -13.83 16 6 H -0.23 -9.51 6.25 99.48 0.62 -8.89 16 7 C -0.47 -25.23 6.75 25.60 0.17 -25.05 16 8 H 0.02 1.38 8.05 -2.91 -0.02 1.36 16 9 C -0.05 -1.97 0.46 -52.93 -0.02 -2.00 16 10 C 0.09 3.29 3.80 86.30 0.33 3.62 16 11 N -0.52 -17.76 3.03 -871.28 -2.64 -20.40 16 12 C 0.08 3.32 3.90 86.49 0.34 3.65 16 13 C -0.06 -2.06 6.35 72.07 0.46 -1.61 16 14 S -0.31 -9.56 21.79 -56.49 -1.23 -10.80 16 15 C -0.02 -0.58 2.70 30.69 0.08 -0.50 16 16 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 17 C -0.10 -2.17 5.02 30.60 0.15 -2.02 16 18 C -0.10 -1.84 5.90 30.60 0.18 -1.66 16 19 C -0.11 -2.31 5.38 30.59 0.16 -2.14 16 20 C -0.12 -2.83 3.70 30.68 0.11 -2.71 16 21 C 0.08 2.43 1.33 45.16 0.06 2.49 16 22 H 0.05 1.57 5.60 -2.39 -0.01 1.55 16 23 C -0.19 -7.30 8.76 30.59 0.27 -7.03 16 24 C -0.18 -6.81 7.65 30.60 0.23 -6.58 16 25 H 0.26 15.22 8.31 -92.70 -0.77 14.44 16 26 H 0.09 3.01 4.52 -2.38 -0.01 3.00 16 27 H 0.05 1.95 4.06 -2.39 -0.01 1.94 16 28 H 0.03 1.44 6.69 -2.39 -0.02 1.42 16 29 H 0.06 2.69 7.29 -2.38 -0.02 2.68 16 30 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 31 H 0.09 2.87 7.57 -2.39 -0.02 2.86 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.58 6.72 -2.39 -0.02 1.57 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.42 6.43 -2.39 -0.02 1.41 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 1.82 4.22 -2.38 -0.01 1.81 16 39 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.10 3.15 8.09 -2.39 -0.02 3.13 16 41 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 42 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.12 3.73 3.73 -2.39 -0.01 3.72 16 Total: -1.00 -61.22 305.18 1.99 -59.24 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.89 Total: 24.23 kcal Atomic # 6 Polarization: -42.64 SS G_CDS: 2.98 Total: -39.66 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -2.34 Total: -77.71 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.69 Total: 44.70 kcal Atomic # 16 Polarization: -9.56 SS G_CDS: -1.23 Total: -10.80 kcal Total: -61.22 1.99 -59.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602786251.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.831 kcal (2) G-P(sol) polarization free energy of solvation -61.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds