Wall clock time and date at job start Fri Apr 10 2020 15:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36130 * 120.17234 * 2 1 4 4 C 1.39329 * 120.98828 * 179.69879 * 3 2 1 5 5 C 1.36128 * 120.99062 * 0.63235 * 4 3 2 6 6 C 1.50698 * 120.17643 * 179.67259 * 5 4 3 7 7 N 1.46900 * 109.47282 * 105.15833 * 6 5 4 8 8 C 1.47963 * 110.99809 * 184.70382 * 7 6 5 9 9 C 1.53933 * 86.17969 * 137.58196 * 8 7 6 10 10 C 1.50704 * 113.73061 * 221.81351 * 9 8 7 11 11 H 1.07999 * 120.00118 * 358.09836 * 10 9 8 12 12 C 1.37883 * 120.00065 * 178.09511 * 10 9 8 13 13 N 1.31515 * 119.99841 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99795 * 179.97438 * 12 10 9 15 15 H 1.48495 * 109.47318 * 60.00747 * 14 12 10 16 16 H 1.48508 * 109.46819 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47426 * 299.99893 * 14 12 10 18 18 C 1.48305 * 111.00262 * 284.05107 * 7 6 5 19 19 C 1.40513 * 119.65093 * 359.39919 * 5 4 3 20 20 C 1.40542 * 121.29380 * 180.32637 * 19 5 4 21 21 C 1.36092 * 119.65158 * 179.97438 * 20 19 5 22 22 C 1.39381 * 120.99543 * 0.02562 * 21 20 19 23 23 C 1.36088 * 120.98968 * 359.97438 * 22 21 20 24 24 C 1.40494 * 120.17505 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.47677 * 269.98066 * 1 2 3 26 26 H 1.09007 * 109.47500 * 29.98068 * 1 2 3 27 27 H 1.09003 * 109.47271 * 149.97854 * 1 2 3 28 28 H 1.07996 * 119.50444 * 0.02562 * 3 2 1 29 29 H 1.08004 * 119.50829 * 180.30694 * 4 3 2 30 30 H 1.09000 * 109.47089 * 345.15088 * 6 5 4 31 31 H 1.09007 * 109.46695 * 225.15468 * 6 5 4 32 32 H 1.08994 * 113.76321 * 23.25850 * 8 7 6 33 33 H 1.09003 * 113.75509 * 251.89356 * 8 7 6 34 34 H 1.09001 * 113.73998 * 90.63825 * 9 8 7 35 35 H 0.96996 * 119.99859 * 179.97438 * 13 12 10 36 36 H 1.09001 * 113.85255 * 108.14267 * 18 7 6 37 37 H 1.09002 * 113.76134 * 336.68584 * 18 7 6 38 38 H 1.07997 * 120.17588 * 359.93218 * 20 19 5 39 39 H 1.07997 * 119.49703 * 179.97438 * 21 20 19 40 40 H 1.07994 * 119.50454 * 179.97438 * 22 21 20 41 41 H 1.08005 * 120.16977 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.1769 0.0000 4 6 3.5843 1.1967 0.0063 5 6 4.3018 0.0399 -0.0003 6 6 5.8082 0.0828 -0.0008 7 7 6.3086 -0.2724 1.3339 8 6 7.7800 -0.1322 1.4031 9 6 7.5509 0.5081 2.7841 10 6 8.4147 1.7153 3.0437 11 1 9.1337 2.0342 2.3036 12 6 8.2871 2.4130 4.2262 13 7 7.4118 2.0245 5.1276 14 14 9.3583 3.9090 4.5482 15 1 9.1093 4.9310 3.5002 16 1 9.0294 4.4756 5.8809 17 1 10.7882 3.5093 4.5201 18 6 6.1370 0.8541 2.2831 19 6 3.6305 -1.1945 -0.0008 20 6 4.3367 -2.4096 -0.0006 21 6 3.6525 -3.5860 -0.0006 22 6 2.2588 -3.6058 -0.0013 23 6 1.5417 -2.4492 -0.0014 24 6 2.2131 -1.2146 -0.0005 25 1 -0.3634 -0.0003 1.0276 26 1 -0.3634 0.8902 -0.5136 27 1 -0.3634 -0.8898 -0.5142 28 1 1.6459 2.1091 0.0004 29 1 4.1028 2.1441 0.0112 30 1 6.1429 1.0875 -0.2589 31 1 6.1916 -0.6274 -0.7335 32 1 8.1910 0.5547 0.6633 33 1 8.3103 -1.0836 1.4428 34 1 7.5621 -0.2071 3.6066 35 1 7.3223 2.5150 5.9596 36 1 5.3557 0.6900 3.0253 37 1 6.0685 1.8289 1.8001 38 1 5.4167 -2.4097 -0.0012 39 1 4.1977 -4.5182 -0.0009 40 1 1.7404 -4.5531 -0.0016 41 1 0.4620 -2.4800 -0.0024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138013186.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:01:05 Heat of formation + Delta-G solvation = 68.045937 kcal Electronic energy + Delta-G solvation = -21302.969017 eV Core-core repulsion = 18340.987331 eV Total energy + Delta-G solvation = -2961.981686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.46783 -38.58463 -36.42396 -34.36137 -32.51973 -30.19878 -29.98546 -29.53908 -26.86730 -25.02634 -24.67353 -23.11900 -22.87365 -22.06083 -19.72706 -18.54880 -17.30981 -16.75474 -16.58537 -15.75811 -14.89824 -14.53150 -14.41222 -14.24486 -13.93326 -13.75826 -13.70008 -13.30535 -12.72232 -12.61400 -12.39154 -11.98919 -11.89485 -11.87261 -11.57896 -11.28390 -11.00442 -10.94623 -10.80409 -10.64158 -10.45233 -10.23161 -9.75145 -9.53271 -9.13910 -8.99336 -8.44505 -8.40205 -7.89414 -7.51696 -6.04221 -4.09156 0.72846 1.22964 2.24377 3.18053 3.29787 3.35184 3.37044 4.26405 4.40864 4.70406 4.87002 4.95743 4.98470 5.07759 5.18223 5.24210 5.29193 5.37573 5.55100 5.56423 5.61316 5.64542 5.74104 5.78221 5.92003 6.06735 6.09815 6.24715 6.30394 6.37812 6.44129 6.45571 6.50482 6.63244 6.65477 6.75270 6.79778 6.91050 7.06581 7.18926 7.21768 7.24824 7.73147 7.91485 8.07749 8.37288 8.93032 9.55683 11.05114 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023115 B = 0.004213 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.023409 B = 6644.828946 C = 7250.493913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.089 4.089 3 C -0.111 4.111 4 C -0.114 4.114 5 C -0.050 4.050 6 C 0.056 3.944 7 N -0.484 5.484 8 C -0.003 4.003 9 C 0.039 3.961 10 C -0.520 4.520 11 H 0.056 0.944 12 C 0.067 3.933 13 N -0.886 5.886 14 Si 0.890 3.110 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.019 3.981 19 C -0.033 4.033 20 C -0.078 4.078 21 C -0.132 4.132 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.049 4.049 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.262 0.738 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.133 0.867 39 H 0.118 0.882 40 H 0.117 0.883 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.920 -6.598 -11.800 18.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.089 4.089 3 C -0.129 4.129 4 C -0.133 4.133 5 C -0.051 4.051 6 C -0.072 4.072 7 N -0.206 5.206 8 C -0.132 4.132 9 C 0.020 3.980 10 C -0.558 4.558 11 H 0.075 0.925 12 C -0.136 4.136 13 N -0.523 5.523 14 Si 0.718 3.282 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.202 1.202 18 C -0.109 4.109 19 C -0.033 4.033 20 C -0.096 4.096 21 C -0.150 4.150 22 C -0.135 4.135 23 C -0.136 4.136 24 C -0.049 4.049 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.151 0.849 39 H 0.136 0.864 40 H 0.135 0.865 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.302 -7.190 -11.498 18.309 hybrid contribution 0.829 1.734 0.048 1.922 sum -11.473 -5.456 -11.450 17.103 Atomic orbital electron populations 1.20770 0.91328 1.02477 1.02270 1.19633 0.95629 0.92422 1.01229 1.20652 0.94099 0.97393 1.00722 1.20748 0.93848 0.98056 1.00652 1.19695 0.95494 0.92123 0.97760 1.21570 0.90468 0.99949 0.95187 1.68697 1.08601 1.39043 1.04288 1.24090 0.88535 0.99397 1.01152 1.20301 0.91170 0.95457 0.91061 1.21052 1.20858 1.11400 1.02497 0.92548 1.25004 0.95187 0.97474 0.95898 1.69960 1.34477 1.39889 1.07963 0.86698 0.81028 0.83111 0.77394 1.20284 1.21248 1.20171 1.24065 1.01937 0.90732 0.94215 1.17888 0.92000 0.93548 0.99882 1.21169 1.00463 0.91271 0.96731 1.20819 0.94233 0.98154 1.01832 1.20789 0.94302 0.97948 1.00447 1.20949 0.99435 0.91702 1.01505 1.17909 0.92514 0.93275 1.01165 0.91207 0.91625 0.91570 0.86311 0.86164 0.93588 0.90840 0.92669 0.91576 0.92390 0.92833 0.91632 0.92860 0.84936 0.86351 0.86523 0.85933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 9.54 36.00 0.34 -0.77 16 2 C -0.09 -1.20 5.89 -104.53 -0.62 -1.82 16 3 C -0.11 -1.54 9.59 -39.93 -0.38 -1.92 16 4 C -0.11 -1.79 9.57 -39.93 -0.38 -2.17 16 5 C -0.05 -0.84 5.10 -104.52 -0.53 -1.37 16 6 C 0.06 0.97 4.04 -4.98 -0.02 0.95 16 7 N -0.48 -9.74 6.00 -239.47 -1.44 -11.18 16 8 C 0.00 -0.07 7.54 -2.76 -0.02 -0.09 16 9 C 0.04 0.98 3.60 -90.84 -0.33 0.66 16 10 C -0.52 -14.12 8.77 -34.44 -0.30 -14.42 16 11 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 12 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 13 N -0.89 -25.65 13.29 55.43 0.74 -24.91 16 14 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 C 0.02 0.44 7.21 -2.57 -0.02 0.43 16 19 C -0.03 -0.54 5.74 -106.83 -0.61 -1.15 16 20 C -0.08 -1.19 9.25 -39.48 -0.37 -1.56 16 21 C -0.13 -1.73 9.95 -39.93 -0.40 -2.12 16 22 C -0.12 -1.41 9.95 -39.93 -0.40 -1.80 16 23 C -0.12 -1.49 9.28 -39.49 -0.37 -1.86 16 24 C -0.05 -0.72 5.74 -106.84 -0.61 -1.34 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.07 0.57 6.43 -51.93 -0.33 0.24 16 28 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.12 1.79 7.96 -52.48 -0.42 1.37 16 30 H 0.05 0.79 7.46 -51.93 -0.39 0.41 16 31 H 0.07 1.15 7.31 -51.93 -0.38 0.77 16 32 H 0.06 1.11 7.83 -51.93 -0.41 0.71 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 37 H 0.05 1.25 7.65 -51.93 -0.40 0.85 16 38 H 0.13 2.01 6.60 -52.49 -0.35 1.66 16 39 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 40 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 41 H 0.12 1.23 6.37 -52.48 -0.33 0.90 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -29.42 334.90 -11.71 -41.13 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -5.93 Total: 2.48 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: -5.11 Total: -28.61 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: -0.70 Total: -36.09 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.42 -11.71 -41.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138013186.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.174 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds