Wall clock time and date at job start Fri Apr 10 2020 15:02:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38414 * 119.86224 * 2 1 4 4 C 1.38125 * 120.33050 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.98037 * 180.02562 * 4 3 2 6 6 C 1.38789 * 120.04148 * 359.72795 * 4 3 2 7 7 N 1.39467 * 120.13854 * 180.27483 * 6 4 3 8 8 C 1.39970 * 119.71834 * 0.54495 * 6 4 3 9 9 C 1.48298 * 120.15880 * 179.72459 * 8 6 4 10 10 C 1.39378 * 120.12513 * 129.73040 * 9 8 6 11 11 C 1.38015 * 119.87422 * 179.97438 * 10 9 8 12 12 C 1.38329 * 120.12454 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.87305 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47047 * 89.99764 * 13 12 11 15 15 H 1.08005 * 119.99901 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00155 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00169 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99874 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47286 * 89.99790 * 18 16 14 20 20 H 1.48502 * 109.47152 * 209.99976 * 18 16 14 21 21 H 1.48506 * 109.47070 * 329.99417 * 18 16 14 22 22 C 1.38322 * 120.25208 * 0.04175 * 12 11 10 23 23 C 1.38014 * 120.12968 * 359.97438 * 22 12 11 24 24 C 1.38018 * 119.86442 * 180.02562 * 2 1 3 25 25 H 1.08993 * 109.47061 * 269.97713 * 1 2 3 26 26 H 1.09000 * 109.47351 * 29.98039 * 1 2 3 27 27 H 1.09010 * 109.46692 * 149.97565 * 1 2 3 28 28 H 1.08007 * 119.83565 * 359.97438 * 3 2 1 29 29 H 1.08999 * 109.46755 * 90.00091 * 5 4 3 30 30 H 1.08997 * 109.46842 * 210.00192 * 5 4 3 31 31 H 1.09001 * 109.47000 * 330.00467 * 5 4 3 32 32 H 0.96998 * 119.99667 * 180.27147 * 7 6 4 33 33 H 0.96989 * 120.00024 * 0.27473 * 7 6 4 34 34 H 1.08001 * 120.06734 * 0.27649 * 10 9 8 35 35 H 1.08000 * 119.93422 * 179.97438 * 11 10 9 36 36 H 1.08997 * 109.46988 * 210.00203 * 13 12 11 37 37 H 1.09000 * 109.46938 * 330.00204 * 13 12 11 38 38 H 0.97001 * 120.00282 * 180.02562 * 17 16 14 39 39 H 1.07996 * 119.93816 * 179.97438 * 22 12 11 40 40 H 1.07992 * 120.06777 * 179.97438 * 23 22 12 41 41 H 1.08001 * 120.01883 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.2004 0.0000 4 6 3.5774 1.2117 -0.0005 5 6 4.3197 2.5232 0.0001 6 6 4.2820 0.0159 0.0046 7 7 5.6766 0.0250 0.0099 8 6 3.5870 -1.1990 -0.0012 9 6 4.3301 -2.4824 -0.0019 10 6 4.0104 -3.4764 0.9214 11 6 4.7049 -4.6690 0.9157 12 6 5.7163 -4.8790 -0.0043 13 6 6.4706 -6.1836 -0.0058 14 6 5.7789 -7.1628 -0.9188 15 1 4.8828 -6.8696 -1.4457 16 6 6.2904 -8.4327 -1.0824 17 7 5.6870 -9.2871 -1.8796 18 14 7.8406 -8.9396 -0.1717 19 1 7.4734 -9.5255 1.1425 20 1 8.5789 -9.9477 -0.9742 21 1 8.7019 -7.7486 0.0405 22 6 6.0381 -3.8960 -0.9227 23 6 5.3506 -2.6994 -0.9262 24 6 2.1942 -1.1969 -0.0005 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8899 -0.5143 28 1 1.6512 2.1329 -0.0004 29 1 4.4991 2.8386 1.0279 30 1 5.2730 2.4012 -0.5143 31 1 3.7239 3.2781 -0.5130 32 1 6.1670 -0.8119 0.0095 33 1 6.1561 0.8681 0.0140 34 1 3.2174 -3.3156 1.6367 35 1 4.4583 -5.4397 1.6310 36 1 7.4881 -6.0146 -0.3582 37 1 6.4990 -6.5880 1.0060 38 1 6.0466 -10.1806 -1.9944 39 1 6.8290 -4.0653 -1.6384 40 1 5.6030 -1.9324 -1.6434 41 1 1.6523 -2.1311 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244603774.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:19 Heat of formation + Delta-G solvation = 25.771034 kcal Electronic energy + Delta-G solvation = -20653.261704 eV Core-core repulsion = 17689.446841 eV Total energy + Delta-G solvation = -2963.814863 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.03819 -38.33168 -35.23431 -33.98125 -32.63312 -31.44066 -30.47951 -30.20672 -27.66077 -26.85898 -25.59224 -23.46658 -22.11694 -21.33371 -20.30508 -19.84020 -17.18185 -16.95215 -16.79134 -15.90412 -14.86375 -14.69356 -14.35335 -14.06584 -14.04398 -13.89643 -13.46068 -13.27215 -12.93517 -12.88774 -12.63450 -12.41797 -12.37111 -12.04719 -11.96620 -11.65027 -11.43818 -11.18469 -10.82970 -10.71978 -10.36161 -10.24241 -10.06796 -9.94084 -9.40652 -8.73241 -8.60598 -8.39086 -7.79447 -7.15016 -6.09346 -4.08779 1.25038 1.64017 1.95504 2.12687 3.26653 3.34566 3.36834 3.84432 3.94861 4.38342 4.39275 4.76052 4.81553 4.97960 5.20854 5.22141 5.30103 5.43440 5.45691 5.47425 5.51926 5.54125 5.61805 5.65136 5.80988 5.83780 6.01824 6.07282 6.14559 6.18799 6.36767 6.45032 6.53279 6.61337 6.77910 6.91779 6.95140 6.98836 7.03386 7.08352 7.53416 7.55966 7.56842 7.69021 7.80651 8.47390 8.96097 9.50614 11.03597 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029127 B = 0.003501 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.090354 B = 7996.595427 C = 8606.473117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.145 4.145 3 C -0.076 4.076 4 C -0.169 4.169 5 C -0.101 4.101 6 C 0.225 3.775 7 N -0.875 5.875 8 C -0.103 4.103 9 C -0.068 4.068 10 C -0.108 4.108 11 C -0.119 4.119 12 C -0.027 4.027 13 C 0.013 3.987 14 C -0.513 4.513 15 H 0.074 0.926 16 C 0.069 3.931 17 N -0.899 5.899 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.265 1.265 22 C -0.119 4.119 23 C -0.121 4.121 24 C -0.065 4.065 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.116 0.884 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.403 0.597 33 H 0.393 0.607 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.028 0.972 37 H 0.023 0.977 38 H 0.264 0.736 39 H 0.120 0.880 40 H 0.114 0.886 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.985 22.182 5.195 23.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.147 4.147 3 C -0.095 4.095 4 C -0.173 4.173 5 C -0.158 4.158 6 C 0.120 3.880 7 N -0.417 5.417 8 C -0.107 4.107 9 C -0.068 4.068 10 C -0.126 4.126 11 C -0.137 4.137 12 C -0.027 4.027 13 C -0.024 4.024 14 C -0.551 4.551 15 H 0.092 0.908 16 C -0.133 4.133 17 N -0.538 5.538 18 Si 0.705 3.295 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.190 1.190 22 C -0.137 4.137 23 C -0.139 4.139 24 C -0.084 4.084 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.134 0.866 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.234 0.766 33 H 0.222 0.778 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.138 0.862 40 H 0.132 0.868 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.995 21.991 5.117 22.929 hybrid contribution 1.090 -0.542 0.315 1.258 sum -2.905 21.449 5.432 22.316 Atomic orbital electron populations 1.20642 0.91593 1.02181 1.01634 1.19532 0.95705 0.92813 1.06673 1.20605 0.92636 0.97174 0.99093 1.19211 0.93835 0.93276 1.11022 1.20551 0.99499 0.94191 1.01595 1.17522 0.84076 0.92392 0.94047 1.42770 1.03361 1.11146 1.84407 1.18289 0.92861 0.90634 1.08954 1.18428 0.97480 0.93125 0.97793 1.21091 0.99658 0.93383 0.98440 1.21026 0.96345 0.96497 0.99796 1.20345 0.94523 0.95486 0.92321 1.18833 0.95531 0.90331 0.97725 1.20927 1.12263 0.95739 1.26201 0.90806 1.25004 0.96997 0.96329 0.94932 1.69901 1.40215 1.06205 1.37457 0.86802 0.83925 0.78713 0.80042 1.20149 1.21240 1.18956 1.20995 1.00705 0.92981 0.99009 1.21076 0.96676 0.97674 0.98502 1.20895 0.92399 0.97528 0.97550 0.91980 0.92220 0.91933 0.86607 0.91939 0.92389 0.91749 0.76584 0.77796 0.86811 0.86200 0.95417 0.95833 0.92576 0.86231 0.86817 0.86051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.00 36.00 0.36 -0.61 16 2 C -0.15 -1.74 5.88 -104.64 -0.61 -2.35 16 3 C -0.08 -0.86 9.33 -39.56 -0.37 -1.23 16 4 C -0.17 -1.94 5.89 -104.46 -0.62 -2.55 16 5 C -0.10 -0.85 9.56 36.01 0.34 -0.51 16 6 C 0.23 2.92 6.66 -83.53 -0.56 2.36 16 7 N -0.88 -9.59 8.53 32.55 0.28 -9.32 16 8 C -0.10 -1.50 5.49 -104.72 -0.57 -2.07 16 9 C -0.07 -1.10 5.07 -104.91 -0.53 -1.63 16 10 C -0.11 -1.80 9.51 -39.24 -0.37 -2.17 16 11 C -0.12 -2.24 9.68 -39.63 -0.38 -2.63 16 12 C -0.03 -0.55 5.07 -104.56 -0.53 -1.08 16 13 C 0.01 0.31 4.17 -29.04 -0.12 0.18 16 14 C -0.51 -14.54 9.65 -34.44 -0.33 -14.87 16 15 H 0.07 2.30 7.98 -52.48 -0.42 1.88 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 17 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 18 Si 0.88 21.26 27.47 -169.99 -4.67 16.59 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 22 C -0.12 -2.22 9.68 -39.63 -0.38 -2.60 16 23 C -0.12 -1.98 7.72 -39.24 -0.30 -2.28 16 24 C -0.07 -0.89 9.15 -39.28 -0.36 -1.25 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 27 H 0.06 0.57 8.08 -51.92 -0.42 0.15 16 28 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.43 6.56 -51.93 -0.34 0.09 16 31 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.40 4.67 5.99 -40.82 -0.24 4.43 16 33 H 0.39 3.33 6.83 -40.82 -0.28 3.05 16 34 H 0.11 1.68 8.04 -52.49 -0.42 1.25 16 35 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 36 H 0.03 0.65 7.14 -51.93 -0.37 0.28 16 37 H 0.02 0.54 7.51 -51.93 -0.39 0.15 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 40 H 0.11 1.66 7.51 -52.49 -0.39 1.26 16 41 H 0.12 1.61 8.04 -52.49 -0.42 1.19 16 LS Contribution 337.32 15.07 5.08 5.08 Total: -1.00 -31.10 337.32 -9.80 -40.89 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.82 Total: 6.91 kcal Atomic # 6 Polarization: -27.96 SS G_CDS: -5.44 Total: -33.40 kcal Atomic # 7 Polarization: -37.13 SS G_CDS: 1.05 Total: -36.08 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.10 -9.80 -40.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244603774.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.665 kcal (2) G-P(sol) polarization free energy of solvation -31.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds