Wall clock time and date at job start Fri Apr 10 2020 15:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38414 * 119.86224 * 2 1 4 4 C 1.38125 * 120.33050 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.98037 * 180.02562 * 4 3 2 6 6 C 1.38789 * 120.04148 * 359.72795 * 4 3 2 7 7 N 1.39467 * 120.13854 * 180.27483 * 6 4 3 8 8 C 1.39970 * 119.71834 * 0.54495 * 6 4 3 9 9 C 1.48298 * 120.15880 * 179.72459 * 8 6 4 10 10 C 1.39378 * 120.12513 * 129.73040 * 9 8 6 11 11 C 1.38015 * 119.87422 * 179.97438 * 10 9 8 12 12 C 1.38329 * 120.12454 * 359.97438 * 11 10 9 13 13 C 1.50699 * 119.87305 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47047 * 89.99764 * 13 12 11 15 15 H 1.08005 * 119.99901 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00155 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00169 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99874 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47286 * 89.99790 * 18 16 14 20 20 H 1.48502 * 109.47152 * 209.99976 * 18 16 14 21 21 H 1.48506 * 109.47070 * 329.99417 * 18 16 14 22 22 C 1.38322 * 120.25208 * 0.04175 * 12 11 10 23 23 C 1.38014 * 120.12968 * 359.97438 * 22 12 11 24 24 C 1.38018 * 119.86442 * 180.02562 * 2 1 3 25 25 H 1.08993 * 109.47061 * 269.97713 * 1 2 3 26 26 H 1.09000 * 109.47351 * 29.98039 * 1 2 3 27 27 H 1.09010 * 109.46692 * 149.97565 * 1 2 3 28 28 H 1.08007 * 119.83565 * 359.97438 * 3 2 1 29 29 H 1.08999 * 109.46755 * 90.00091 * 5 4 3 30 30 H 1.08997 * 109.46842 * 210.00192 * 5 4 3 31 31 H 1.09001 * 109.47000 * 330.00467 * 5 4 3 32 32 H 0.96998 * 119.99667 * 180.27147 * 7 6 4 33 33 H 0.96989 * 120.00024 * 0.27473 * 7 6 4 34 34 H 1.08001 * 120.06734 * 0.27649 * 10 9 8 35 35 H 1.08000 * 119.93422 * 179.97438 * 11 10 9 36 36 H 1.08997 * 109.46988 * 210.00203 * 13 12 11 37 37 H 1.09000 * 109.46938 * 330.00204 * 13 12 11 38 38 H 0.97001 * 120.00282 * 180.02562 * 17 16 14 39 39 H 1.07996 * 119.93816 * 179.97438 * 22 12 11 40 40 H 1.07992 * 120.06777 * 179.97438 * 23 22 12 41 41 H 1.08001 * 120.01883 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.2004 0.0000 4 6 3.5774 1.2117 -0.0005 5 6 4.3197 2.5232 0.0001 6 6 4.2820 0.0159 0.0046 7 7 5.6766 0.0250 0.0099 8 6 3.5870 -1.1990 -0.0012 9 6 4.3301 -2.4824 -0.0019 10 6 4.0104 -3.4764 0.9214 11 6 4.7049 -4.6690 0.9157 12 6 5.7163 -4.8790 -0.0043 13 6 6.4706 -6.1836 -0.0058 14 6 5.7789 -7.1628 -0.9188 15 1 4.8828 -6.8696 -1.4457 16 6 6.2904 -8.4327 -1.0824 17 7 5.6870 -9.2871 -1.8796 18 14 7.8406 -8.9396 -0.1717 19 1 7.4734 -9.5255 1.1425 20 1 8.5789 -9.9477 -0.9742 21 1 8.7019 -7.7486 0.0405 22 6 6.0381 -3.8960 -0.9227 23 6 5.3506 -2.6994 -0.9262 24 6 2.1942 -1.1969 -0.0005 25 1 -0.3633 -0.0004 1.0276 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8899 -0.5143 28 1 1.6512 2.1329 -0.0004 29 1 4.4991 2.8386 1.0279 30 1 5.2730 2.4012 -0.5143 31 1 3.7239 3.2781 -0.5130 32 1 6.1670 -0.8119 0.0095 33 1 6.1561 0.8681 0.0140 34 1 3.2174 -3.3156 1.6367 35 1 4.4583 -5.4397 1.6310 36 1 7.4881 -6.0146 -0.3582 37 1 6.4990 -6.5880 1.0060 38 1 6.0466 -10.1806 -1.9944 39 1 6.8290 -4.0653 -1.6384 40 1 5.6030 -1.9324 -1.6434 41 1 1.6523 -2.1311 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244603774.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:15 Heat of formation + Delta-G solvation = 9.701242 kcal Electronic energy + Delta-G solvation = -20653.958543 eV Core-core repulsion = 17689.446841 eV Total energy + Delta-G solvation = -2964.511702 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 4.06 seconds Orbital eigenvalues (eV) -41.09252 -39.61704 -36.15898 -35.58084 -34.24796 -32.61400 -31.87714 -31.47090 -29.03853 -27.86817 -26.48512 -25.10692 -23.49007 -22.77132 -21.27991 -21.11530 -18.98394 -18.08546 -17.90812 -17.20430 -16.43934 -16.05677 -15.91141 -15.22480 -14.92501 -14.91997 -14.65617 -14.40406 -14.25790 -14.05508 -13.95389 -13.71521 -13.53898 -13.23570 -13.13945 -12.81081 -12.74962 -12.46308 -12.20243 -11.96800 -11.88207 -11.74407 -11.65428 -11.43671 -11.13305 -10.80228 -9.87012 -9.79139 -9.04589 -8.31251 -8.13166 -6.36700 0.12443 0.54771 0.69071 0.89211 1.35845 1.37508 1.49532 2.34282 2.80981 3.00537 3.03076 3.11603 3.72304 3.96860 4.05607 4.14462 4.16358 4.26984 4.44821 4.47804 4.56997 4.65697 4.70611 4.74660 4.85868 4.88563 4.95018 5.00637 5.01431 5.11282 5.16768 5.22011 5.29167 5.39340 5.42938 5.53447 5.55197 5.65334 5.73106 5.86225 5.97744 6.09087 6.14407 6.27453 6.62326 6.69786 6.99308 7.26837 8.85564 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029127 B = 0.003501 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.090354 B = 7996.595427 C = 8606.473117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.152 4.152 3 C -0.076 4.076 4 C -0.171 4.171 5 C -0.101 4.101 6 C 0.217 3.783 7 N -0.870 5.870 8 C -0.132 4.132 9 C -0.054 4.054 10 C -0.110 4.110 11 C -0.128 4.128 12 C -0.062 4.062 13 C 0.020 3.980 14 C -0.521 4.521 15 H 0.025 0.975 16 C 0.007 3.993 17 N -0.950 5.950 18 Si 0.953 3.047 19 H -0.265 1.265 20 H -0.282 1.282 21 H -0.244 1.244 22 C -0.126 4.126 23 C -0.115 4.115 24 C -0.081 4.081 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.143 0.857 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.399 0.601 33 H 0.405 0.595 34 H 0.133 0.867 35 H 0.119 0.881 36 H 0.033 0.967 37 H 0.030 0.970 38 H 0.268 0.732 39 H 0.122 0.878 40 H 0.134 0.866 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.478 25.118 6.247 26.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.154 4.154 3 C -0.094 4.094 4 C -0.176 4.176 5 C -0.158 4.158 6 C 0.111 3.889 7 N -0.412 5.412 8 C -0.137 4.137 9 C -0.054 4.054 10 C -0.128 4.128 11 C -0.146 4.146 12 C -0.063 4.063 13 C -0.017 4.017 14 C -0.559 4.559 15 H 0.044 0.956 16 C -0.190 4.190 17 N -0.590 5.590 18 Si 0.775 3.225 19 H -0.190 1.190 20 H -0.208 1.208 21 H -0.168 1.168 22 C -0.144 4.144 23 C -0.133 4.133 24 C -0.100 4.100 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.160 0.840 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.230 0.770 33 H 0.237 0.763 34 H 0.151 0.849 35 H 0.137 0.863 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.077 0.923 39 H 0.140 0.860 40 H 0.152 0.848 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.482 24.965 6.176 25.953 hybrid contribution 0.769 -1.281 -0.059 1.495 sum -2.713 23.684 6.117 24.612 Atomic orbital electron populations 1.20679 0.89905 1.02911 1.02444 1.19835 0.97068 0.92493 1.05957 1.20991 0.92839 0.97945 0.97650 1.19618 0.94273 0.94044 1.09670 1.20620 0.99789 0.92779 1.02581 1.17668 0.84807 0.92393 0.94081 1.42738 1.02783 1.11692 1.83949 1.18285 0.93304 0.90342 1.11758 1.18688 0.96589 0.93685 0.96454 1.21288 0.99751 0.92753 0.98986 1.21099 0.96340 0.97476 0.99710 1.20216 0.96193 0.95143 0.94704 1.18669 0.95569 0.90831 0.96624 1.21163 1.11026 0.97179 1.26509 0.95633 1.26012 1.00975 0.96188 0.95860 1.70064 1.42522 1.06877 1.39557 0.85622 0.79225 0.78927 0.78689 1.18984 1.20817 1.16780 1.21081 1.01218 0.93505 0.98626 1.21214 0.96272 0.97139 0.98690 1.20980 0.92286 0.98232 0.98463 0.91067 0.90545 0.92198 0.83960 0.90948 0.91536 0.90279 0.77007 0.76330 0.84935 0.86252 0.94904 0.95198 0.92328 0.86047 0.84829 0.86662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 10.00 71.23 0.71 -0.98 16 2 C -0.15 -3.32 5.88 -19.88 -0.12 -3.43 16 3 C -0.08 -1.47 9.33 22.28 0.21 -1.26 16 4 C -0.17 -3.44 5.89 -19.76 -0.12 -3.55 16 5 C -0.10 -1.32 9.56 71.24 0.68 -0.64 16 6 C 0.22 5.18 6.66 38.48 0.26 5.43 16 7 N -0.87 -17.26 8.53 -50.92 -0.43 -17.69 16 8 C -0.13 -3.71 5.49 -19.93 -0.11 -3.82 16 9 C -0.05 -1.72 5.07 -20.05 -0.10 -1.82 16 10 C -0.11 -3.67 9.51 22.49 0.21 -3.46 16 11 C -0.13 -4.95 9.68 22.24 0.22 -4.74 16 12 C -0.06 -2.66 5.07 -19.82 -0.10 -2.76 16 13 C 0.02 0.97 4.17 29.10 0.12 1.09 16 14 C -0.52 -30.67 9.65 25.60 0.25 -30.43 16 15 H 0.03 1.69 7.98 -2.91 -0.02 1.67 16 16 C 0.01 0.39 5.47 84.65 0.46 0.85 16 17 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 18 Si 0.95 44.08 27.47 68.60 1.88 45.97 16 19 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 21 H -0.24 -10.42 6.54 99.48 0.65 -9.77 16 22 C -0.13 -4.77 9.68 22.24 0.22 -4.55 16 23 C -0.12 -3.71 7.72 22.49 0.17 -3.54 16 24 C -0.08 -2.14 9.15 22.47 0.21 -1.94 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.08 1.00 8.08 -2.39 -0.02 0.98 16 27 H 0.06 1.01 8.08 -2.38 -0.02 0.99 16 28 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 0.76 6.56 -2.39 -0.02 0.75 16 31 H 0.08 0.83 8.08 -2.39 -0.02 0.81 16 32 H 0.40 8.62 5.99 -92.71 -0.56 8.06 16 33 H 0.41 5.82 6.83 -92.72 -0.63 5.19 16 34 H 0.13 3.85 8.04 -2.91 -0.02 3.82 16 35 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 36 H 0.03 1.52 7.14 -2.39 -0.02 1.50 16 37 H 0.03 1.38 7.51 -2.39 -0.02 1.36 16 38 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 39 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 40 H 0.13 3.72 7.51 -2.91 -0.02 3.70 16 41 H 0.12 3.06 8.04 -2.91 -0.02 3.04 16 Total: -1.00 -69.30 337.32 4.71 -64.59 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: -0.20 Total: 26.57 kcal Atomic # 6 Polarization: -62.70 SS G_CDS: 3.17 Total: -59.54 kcal Atomic # 7 Polarization: -77.46 SS G_CDS: -0.14 Total: -77.60 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.88 Total: 45.97 kcal Total: -69.30 4.71 -64.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244603774.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.292 kcal (2) G-P(sol) polarization free energy of solvation -69.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.07 seconds