Wall clock time and date at job start Fri Apr 10 2020 15:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38560 * 119.83604 * 2 1 4 4 C 1.38101 * 120.39277 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.96764 * 179.97438 * 4 3 2 6 6 C 1.38798 * 120.06445 * 0.24853 * 4 3 2 7 7 N 1.39229 * 120.15983 * 179.73298 * 6 4 3 8 8 C 1.40333 * 119.67541 * 359.45826 * 6 4 3 9 9 C 1.47788 * 120.19589 * 180.26928 * 8 6 4 10 10 C 1.40053 * 119.89448 * 245.29539 * 9 8 6 11 11 C 1.36174 * 120.11664 * 179.97438 * 10 9 8 12 12 C 1.40981 * 119.88607 * 0.02562 * 11 10 9 13 13 C 1.40977 * 120.11257 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99975 * 24.70953 * 13 12 11 15 15 C 1.39963 * 120.00026 * 204.71772 * 13 12 11 16 16 N 1.30825 * 120.00240 * 17.98850 * 15 13 12 17 17 Si 1.86797 * 120.00030 * 197.99665 * 15 13 12 18 18 H 1.48501 * 109.47121 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47805 * 119.99366 * 17 15 13 20 20 H 1.48501 * 109.47336 * 239.99893 * 17 15 13 21 21 C 1.40948 * 119.77971 * 359.97438 * 12 11 10 22 22 C 1.36213 * 119.88414 * 359.71981 * 21 12 11 23 23 C 1.50702 * 119.94604 * 180.27358 * 22 21 12 24 24 C 1.37850 * 119.83379 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47400 * 89.99964 * 1 2 3 26 26 H 1.09001 * 109.46629 * 210.00290 * 1 2 3 27 27 H 1.09000 * 109.47116 * 329.99813 * 1 2 3 28 28 H 1.08000 * 119.79953 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47011 * 89.99361 * 5 4 3 30 30 H 1.08998 * 109.47008 * 330.00192 * 5 4 3 31 31 H 1.08995 * 109.47189 * 209.99501 * 5 4 3 32 32 H 0.96994 * 120.00343 * 359.97438 * 7 6 4 33 33 H 0.96998 * 119.99753 * 180.02562 * 7 6 4 34 34 H 1.08002 * 119.94093 * 359.97438 * 10 9 8 35 35 H 1.08002 * 120.06051 * 180.02562 * 11 10 9 36 36 H 0.96999 * 119.99892 * 180.02562 * 16 15 13 37 37 H 1.07992 * 120.05903 * 179.97438 * 21 12 11 38 38 H 1.09003 * 109.46915 * 270.26319 * 23 22 21 39 39 H 1.09002 * 109.46636 * 30.26118 * 23 22 21 40 40 H 1.08992 * 109.47233 * 150.25970 * 23 22 21 41 41 H 1.07995 * 120.04104 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1965 1.2019 0.0000 4 6 3.5774 1.2154 -0.0005 5 6 4.3175 2.5281 -0.0011 6 6 4.2844 0.0209 -0.0063 7 7 5.6766 0.0322 -0.0124 8 6 3.5891 -1.1980 0.0000 9 6 4.3303 -2.4766 0.0000 10 6 4.2364 -3.3378 -1.1005 11 6 4.9179 -4.5168 -1.1055 12 6 5.7185 -4.8701 -0.0002 13 6 6.4256 -6.0897 -0.0001 14 1 6.6924 -6.5593 -0.9354 15 6 6.7818 -6.6921 1.2121 16 7 6.1798 -6.3404 2.3191 17 14 8.1169 -7.9980 1.2493 18 1 8.6366 -8.2138 -0.1250 19 1 9.2234 -7.5499 2.1325 20 1 7.5519 -9.2689 1.7696 21 6 5.8097 -3.9999 1.1049 22 6 5.1291 -2.8200 1.0975 23 6 5.2305 -1.8857 2.2757 24 6 2.1929 -1.1958 0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3632 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6505 2.1338 -0.0004 29 1 4.4962 2.8449 1.0264 30 1 3.7204 3.2815 -0.5148 31 1 5.2710 2.4075 -0.5152 32 1 6.1549 0.8760 -0.0131 33 1 6.1683 -0.8039 -0.0168 34 1 3.6225 -3.0664 -1.9465 35 1 4.8452 -5.1800 -1.9547 36 1 6.4269 -6.7576 3.1591 37 1 6.4213 -4.2662 1.9541 38 1 4.4507 -2.1264 2.9983 39 1 6.2079 -1.9976 2.7449 40 1 5.1061 -0.8576 1.9358 41 1 1.6509 -2.1299 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244613101.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:32 Heat of formation + Delta-G solvation = 19.761474 kcal Electronic energy + Delta-G solvation = -21431.065425 eV Core-core repulsion = 18466.989968 eV Total energy + Delta-G solvation = -2964.075457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.52666 -37.50614 -34.85331 -34.02817 -32.30119 -31.32205 -30.71546 -28.90447 -26.90333 -25.83484 -25.40182 -24.88524 -21.96124 -20.22565 -19.97561 -19.21785 -17.10534 -16.75708 -16.45470 -15.31209 -14.83683 -14.14003 -13.93665 -13.74069 -13.50667 -13.36880 -13.01484 -12.97070 -12.65128 -12.58710 -12.27446 -11.96015 -11.84007 -11.70853 -11.60464 -11.27600 -11.16508 -11.10736 -10.87253 -10.66715 -10.40256 -10.26372 -9.78724 -9.54706 -9.42246 -9.14793 -8.11849 -7.38448 -7.29778 -6.85185 -6.70298 -4.38112 1.88817 2.10945 2.70950 3.03296 3.07091 3.08719 3.15703 3.87950 4.30839 4.44423 4.54805 5.16642 5.27316 5.45310 5.56126 5.62290 5.63763 5.75066 5.89514 5.94623 5.98522 6.09085 6.11326 6.13379 6.19288 6.42630 6.46431 6.53663 6.61841 6.71626 6.85571 6.95832 6.99115 7.02801 7.19914 7.32293 7.34846 7.44963 7.61979 7.88991 8.02201 8.07877 8.14548 8.26428 8.31073 8.59040 8.83843 8.94868 10.10645 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027553 B = 0.004305 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.963705 B = 6502.267351 C = 6871.909348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.149 4.149 3 C -0.091 4.091 4 C -0.175 4.175 5 C -0.098 4.098 6 C 0.217 3.783 7 N -0.871 5.871 8 C -0.058 4.058 9 C -0.189 4.189 10 C -0.067 4.067 11 C -0.232 4.232 12 C 0.117 3.883 13 C -0.458 4.458 14 H 0.078 0.922 15 C 0.076 3.924 16 N -0.786 5.786 17 Si 0.906 3.094 18 H -0.260 1.260 19 H -0.271 1.271 20 H -0.274 1.274 21 C -0.168 4.168 22 C -0.053 4.053 23 C -0.113 4.113 24 C -0.078 4.078 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.109 0.891 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.388 0.612 33 H 0.405 0.595 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.281 0.719 37 H 0.117 0.883 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.064 0.936 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.021 11.307 -1.277 11.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.151 4.151 3 C -0.110 4.110 4 C -0.180 4.180 5 C -0.155 4.155 6 C 0.112 3.888 7 N -0.412 5.412 8 C -0.063 4.063 9 C -0.190 4.190 10 C -0.085 4.085 11 C -0.251 4.251 12 C 0.114 3.886 13 C -0.487 4.487 14 H 0.097 0.903 15 C -0.142 4.142 16 N -0.410 5.410 17 Si 0.730 3.270 18 H -0.183 1.183 19 H -0.197 1.197 20 H -0.199 1.199 21 C -0.187 4.187 22 C -0.054 4.054 23 C -0.170 4.170 24 C -0.097 4.097 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.127 0.873 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.216 0.784 33 H 0.236 0.764 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.135 0.865 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.056 11.232 -1.021 11.685 hybrid contribution 0.862 -0.792 0.125 1.177 sum -2.194 10.440 -0.896 10.706 Atomic orbital electron populations 1.20605 0.92240 1.01683 1.01188 1.19472 0.95223 0.93071 1.07375 1.20453 0.92636 0.96714 1.01175 1.19142 0.93777 0.93148 1.11936 1.20509 0.99353 0.94441 1.01211 1.17648 0.84096 0.92505 0.94537 1.42620 1.03479 1.10779 1.84281 1.18411 0.92269 0.91333 1.04240 1.17759 1.08253 0.95731 0.97299 1.20303 0.98271 0.94078 0.95869 1.20651 1.04766 0.98571 1.01136 1.17651 0.88347 0.91912 0.90677 1.19608 1.30849 1.05008 0.93216 0.90348 1.25943 0.95614 0.97587 0.95102 1.69847 1.33947 1.37246 0.99976 0.86292 0.80913 0.80087 0.79659 1.18336 1.19656 1.19932 1.20860 1.03970 0.93089 1.00812 1.19260 0.97069 0.95356 0.93690 1.20855 1.00431 0.99019 0.96670 1.20972 0.93021 0.96831 0.98859 0.92393 0.92279 0.92615 0.87328 0.92303 0.92220 0.92633 0.78394 0.76367 0.89529 0.89112 0.90824 0.86492 0.92996 0.93328 0.91710 0.86727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 10.00 36.01 0.36 -0.89 16 2 C -0.15 -2.34 5.88 -104.64 -0.61 -2.95 16 3 C -0.09 -1.35 9.33 -39.51 -0.37 -1.72 16 4 C -0.18 -2.65 5.89 -104.47 -0.62 -3.26 16 5 C -0.10 -1.13 9.58 36.01 0.34 -0.79 16 6 C 0.22 3.70 5.36 -83.51 -0.45 3.25 16 7 N -0.87 -13.24 7.61 32.58 0.25 -12.99 16 8 C -0.06 -1.12 4.62 -104.69 -0.48 -1.60 16 9 C -0.19 -4.11 4.55 -104.64 -0.48 -4.59 16 10 C -0.07 -1.51 9.66 -39.64 -0.38 -1.89 16 11 C -0.23 -5.64 9.73 -39.29 -0.38 -6.02 16 12 C 0.12 3.05 5.57 -106.79 -0.60 2.45 16 13 C -0.46 -11.92 9.03 -37.90 -0.34 -12.26 16 14 H 0.08 1.97 7.91 -52.48 -0.42 1.56 16 15 C 0.08 1.88 5.13 -17.33 -0.09 1.79 16 16 N -0.79 -19.96 10.96 55.55 0.61 -19.35 16 17 Si 0.91 18.28 29.60 -169.99 -5.03 13.25 16 18 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 19 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 C -0.17 -4.24 8.26 -39.28 -0.32 -4.56 16 22 C -0.05 -1.20 4.94 -104.68 -0.52 -1.72 16 23 C -0.11 -2.21 9.21 36.01 0.33 -1.88 16 24 C -0.08 -1.41 9.38 -39.21 -0.37 -1.78 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 27 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 28 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.05 0.59 6.53 -51.93 -0.34 0.25 16 32 H 0.39 4.75 6.81 -40.82 -0.28 4.47 16 33 H 0.41 6.82 6.64 -40.82 -0.27 6.55 16 34 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 35 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 36 H 0.28 6.47 8.30 -40.82 -0.34 6.14 16 37 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 40 H 0.06 1.18 4.59 -51.93 -0.24 0.94 16 41 H 0.11 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 331.52 15.07 5.00 5.00 Total: -1.00 -27.10 331.52 -9.79 -36.89 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -5.64 Total: 15.64 kcal Atomic # 6 Polarization: -33.45 SS G_CDS: -4.97 Total: -38.42 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.86 Total: -32.35 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.10 -9.79 -36.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244613101.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.647 kcal (2) G-P(sol) polarization free energy of solvation -27.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds