Wall clock time and date at job start Fri Apr 10 2020 15:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38560 * 119.83604 * 2 1 4 4 C 1.38101 * 120.39277 * 180.02562 * 3 2 1 5 5 C 1.50699 * 119.96764 * 179.97438 * 4 3 2 6 6 C 1.38798 * 120.06445 * 0.24853 * 4 3 2 7 7 N 1.39229 * 120.15983 * 179.73298 * 6 4 3 8 8 C 1.40333 * 119.67541 * 359.45826 * 6 4 3 9 9 C 1.47788 * 120.19589 * 180.26928 * 8 6 4 10 10 C 1.40053 * 119.89448 * 245.29539 * 9 8 6 11 11 C 1.36174 * 120.11664 * 179.97438 * 10 9 8 12 12 C 1.40981 * 119.88607 * 0.02562 * 11 10 9 13 13 C 1.40977 * 120.11257 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99975 * 24.70953 * 13 12 11 15 15 C 1.39963 * 120.00026 * 204.71772 * 13 12 11 16 16 N 1.30825 * 120.00240 * 17.98850 * 15 13 12 17 17 Si 1.86797 * 120.00030 * 197.99665 * 15 13 12 18 18 H 1.48501 * 109.47121 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47805 * 119.99366 * 17 15 13 20 20 H 1.48501 * 109.47336 * 239.99893 * 17 15 13 21 21 C 1.40948 * 119.77971 * 359.97438 * 12 11 10 22 22 C 1.36213 * 119.88414 * 359.71981 * 21 12 11 23 23 C 1.50702 * 119.94604 * 180.27358 * 22 21 12 24 24 C 1.37850 * 119.83379 * 179.97438 * 2 1 3 25 25 H 1.08996 * 109.47400 * 89.99964 * 1 2 3 26 26 H 1.09001 * 109.46629 * 210.00290 * 1 2 3 27 27 H 1.09000 * 109.47116 * 329.99813 * 1 2 3 28 28 H 1.08000 * 119.79953 * 359.97438 * 3 2 1 29 29 H 1.09001 * 109.47011 * 89.99361 * 5 4 3 30 30 H 1.08998 * 109.47008 * 330.00192 * 5 4 3 31 31 H 1.08995 * 109.47189 * 209.99501 * 5 4 3 32 32 H 0.96994 * 120.00343 * 359.97438 * 7 6 4 33 33 H 0.96998 * 119.99753 * 180.02562 * 7 6 4 34 34 H 1.08002 * 119.94093 * 359.97438 * 10 9 8 35 35 H 1.08002 * 120.06051 * 180.02562 * 11 10 9 36 36 H 0.96999 * 119.99892 * 180.02562 * 16 15 13 37 37 H 1.07992 * 120.05903 * 179.97438 * 21 12 11 38 38 H 1.09003 * 109.46915 * 270.26319 * 23 22 21 39 39 H 1.09002 * 109.46636 * 30.26118 * 23 22 21 40 40 H 1.08992 * 109.47233 * 150.25970 * 23 22 21 41 41 H 1.07995 * 120.04104 * 359.97438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1965 1.2019 0.0000 4 6 3.5774 1.2154 -0.0005 5 6 4.3175 2.5281 -0.0011 6 6 4.2844 0.0209 -0.0063 7 7 5.6766 0.0322 -0.0124 8 6 3.5891 -1.1980 0.0000 9 6 4.3303 -2.4766 0.0000 10 6 4.2364 -3.3378 -1.1005 11 6 4.9179 -4.5168 -1.1055 12 6 5.7185 -4.8701 -0.0002 13 6 6.4256 -6.0897 -0.0001 14 1 6.6924 -6.5593 -0.9354 15 6 6.7818 -6.6921 1.2121 16 7 6.1798 -6.3404 2.3191 17 14 8.1169 -7.9980 1.2493 18 1 8.6366 -8.2138 -0.1250 19 1 9.2234 -7.5499 2.1325 20 1 7.5519 -9.2689 1.7696 21 6 5.8097 -3.9999 1.1049 22 6 5.1291 -2.8200 1.0975 23 6 5.2305 -1.8857 2.2757 24 6 2.1929 -1.1958 0.0005 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3632 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.6505 2.1338 -0.0004 29 1 4.4962 2.8449 1.0264 30 1 3.7204 3.2815 -0.5148 31 1 5.2710 2.4075 -0.5152 32 1 6.1549 0.8760 -0.0131 33 1 6.1683 -0.8039 -0.0168 34 1 3.6225 -3.0664 -1.9465 35 1 4.8452 -5.1800 -1.9547 36 1 6.4269 -6.7576 3.1591 37 1 6.4213 -4.2662 1.9541 38 1 4.4507 -2.1264 2.9983 39 1 6.2079 -1.9976 2.7449 40 1 5.1061 -0.8576 1.9358 41 1 1.6509 -2.1299 0.0014 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244613101.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:02:31 Heat of formation + Delta-G solvation = 7.805804 kcal Electronic energy + Delta-G solvation = -21431.583862 eV Core-core repulsion = 18466.989968 eV Total energy + Delta-G solvation = -2964.593894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.90810 -39.19460 -36.17504 -35.69749 -33.79018 -32.98858 -32.01331 -30.52974 -28.01813 -27.61544 -26.91764 -26.22378 -23.59000 -21.92707 -21.25992 -20.81513 -19.00377 -17.99427 -17.72544 -17.10225 -16.38065 -15.74052 -15.45524 -15.12382 -14.75927 -14.67976 -14.41638 -14.29641 -14.10322 -13.91671 -13.62452 -13.41734 -13.23701 -13.19207 -12.96006 -12.81899 -12.75897 -12.58973 -12.31059 -12.13478 -11.96395 -11.74742 -11.34882 -11.18606 -11.00278 -10.94571 -9.52824 -9.25051 -9.01029 -8.65222 -8.02689 -6.32106 0.53594 0.83369 1.01571 1.18493 1.37032 1.49297 1.52384 2.19161 2.67806 3.05628 3.22117 3.69412 4.07988 4.12532 4.24656 4.39845 4.41875 4.54262 4.57978 4.70376 4.79978 4.83802 4.85984 4.90576 4.96578 4.99138 5.01905 5.11894 5.15960 5.16995 5.28287 5.36573 5.47719 5.51055 5.64773 5.72155 5.76594 5.93350 6.08717 6.12139 6.25926 6.29672 6.38936 6.68882 6.76913 6.92521 7.04913 7.13423 8.29997 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027553 B = 0.004305 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.963705 B = 6502.267351 C = 6871.909348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.152 4.152 3 C -0.087 4.087 4 C -0.173 4.173 5 C -0.098 4.098 6 C 0.208 3.792 7 N -0.866 5.866 8 C -0.094 4.094 9 C -0.170 4.170 10 C -0.075 4.075 11 C -0.247 4.247 12 C 0.086 3.914 13 C -0.497 4.497 14 H 0.074 0.926 15 C 0.037 3.963 16 N -0.820 5.820 17 Si 0.981 3.019 18 H -0.259 1.259 19 H -0.263 1.263 20 H -0.266 1.266 21 C -0.187 4.187 22 C -0.057 4.057 23 C -0.103 4.103 24 C -0.095 4.095 25 H 0.069 0.931 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.141 0.859 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.403 0.597 33 H 0.396 0.604 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.288 0.712 37 H 0.101 0.899 38 H 0.049 0.951 39 H 0.054 0.946 40 H 0.081 0.919 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.517 13.920 -1.154 14.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.154 4.154 3 C -0.106 4.106 4 C -0.178 4.178 5 C -0.154 4.154 6 C 0.103 3.897 7 N -0.407 5.407 8 C -0.099 4.099 9 C -0.171 4.171 10 C -0.094 4.094 11 C -0.267 4.267 12 C 0.083 3.917 13 C -0.526 4.526 14 H 0.092 0.908 15 C -0.178 4.178 16 N -0.446 5.446 17 Si 0.801 3.199 18 H -0.182 1.182 19 H -0.187 1.187 20 H -0.191 1.191 21 C -0.207 4.207 22 C -0.058 4.058 23 C -0.160 4.160 24 C -0.114 4.114 25 H 0.087 0.913 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.159 0.841 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.234 0.766 33 H 0.226 0.774 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.559 13.880 -0.904 14.358 hybrid contribution 0.858 -1.390 0.042 1.634 sum -2.702 12.490 -0.862 12.808 Atomic orbital electron populations 1.20648 0.90000 1.02695 1.02225 1.19806 0.96954 0.92458 1.06205 1.20896 0.92773 0.97619 0.99264 1.19591 0.94282 0.93902 1.10022 1.20587 0.99644 0.92779 1.02426 1.17743 0.84674 0.92475 0.94829 1.42573 1.03003 1.11146 1.83999 1.18344 0.92856 0.90850 1.07864 1.18061 1.06519 0.96483 0.96035 1.20547 0.98155 0.93792 0.96868 1.20798 1.05273 0.99569 1.01053 1.17968 0.89376 0.92648 0.91666 1.19812 1.32995 1.05891 0.93920 0.90815 1.26752 0.97276 0.99587 0.94188 1.69895 1.35232 1.38751 1.00684 0.85182 0.77803 0.77230 0.79643 1.18219 1.18719 1.19063 1.20822 1.05136 0.94314 1.00399 1.19563 0.96363 0.94922 0.94925 1.20803 1.00698 0.99136 0.95386 1.20995 0.92716 0.97628 1.00044 0.91266 0.92500 0.90436 0.84081 0.91060 0.90278 0.91823 0.76635 0.77445 0.87977 0.88950 0.90092 0.88132 0.93214 0.92674 0.90018 0.87971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.17 10.00 71.24 0.71 -1.46 16 2 C -0.15 -4.38 5.88 -19.88 -0.12 -4.50 16 3 C -0.09 -2.24 9.33 22.31 0.21 -2.03 16 4 C -0.17 -4.64 5.89 -19.76 -0.12 -4.76 16 5 C -0.10 -1.83 9.58 71.24 0.68 -1.15 16 6 C 0.21 6.71 5.36 38.61 0.21 6.92 16 7 N -0.87 -24.98 7.61 -50.83 -0.39 -25.37 16 8 C -0.09 -3.58 4.62 -19.91 -0.09 -3.68 16 9 C -0.17 -7.51 4.55 -19.88 -0.09 -7.60 16 10 C -0.08 -3.50 9.66 22.23 0.21 -3.29 16 11 C -0.25 -12.63 9.73 22.46 0.22 -12.41 16 12 C 0.09 4.71 5.57 -21.27 -0.12 4.60 16 13 C -0.50 -27.21 9.03 23.36 0.21 -27.00 16 14 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 15 C 0.04 1.90 5.13 85.26 0.44 2.34 16 16 N -0.82 -43.23 10.96 21.83 0.24 -42.99 16 17 Si 0.98 38.35 29.60 68.60 2.03 40.38 16 18 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 19 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 20 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 21 C -0.19 -9.89 8.26 22.46 0.19 -9.71 16 22 C -0.06 -2.65 4.94 -19.90 -0.10 -2.75 16 23 C -0.10 -4.05 9.21 71.24 0.66 -3.39 16 24 C -0.09 -3.37 9.38 22.51 0.21 -3.15 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.27 8.08 -2.39 -0.02 1.25 16 27 H 0.08 1.37 8.08 -2.39 -0.02 1.35 16 28 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 1.21 8.08 -2.39 -0.02 1.19 16 31 H 0.06 1.10 6.53 -2.39 -0.02 1.08 16 32 H 0.40 8.91 6.81 -92.71 -0.63 8.28 16 33 H 0.40 13.13 6.64 -92.71 -0.62 12.52 16 34 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 35 H 0.09 4.51 8.06 -2.91 -0.02 4.49 16 36 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 37 H 0.10 5.56 6.16 -2.91 -0.02 5.55 16 38 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.05 2.05 8.08 -2.39 -0.02 2.03 16 40 H 0.08 2.88 4.59 -2.39 -0.01 2.87 16 41 H 0.10 3.75 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -60.97 331.52 5.00 -55.96 By element: Atomic # 1 Polarization: 45.22 SS G_CDS: -0.19 Total: 45.03 kcal Atomic # 6 Polarization: -76.33 SS G_CDS: 3.31 Total: -73.01 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -0.15 Total: -68.36 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Total: -60.97 5.00 -55.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244613101.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.771 kcal (2) G-P(sol) polarization free energy of solvation -60.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds