Wall clock time and date at job start Fri Apr 10 2020 15:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00170 * 2 1 4 4 C 1.53004 * 109.47263 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.46997 * 64.99895 * 4 3 2 6 6 C 1.36931 * 120.00049 * 269.99629 * 5 4 3 7 7 H 1.08000 * 120.00142 * 4.85865 * 6 5 4 8 8 C 1.38796 * 119.99991 * 184.85458 * 6 5 4 9 9 N 1.31567 * 119.99945 * 5.63864 * 8 6 5 10 10 Si 1.86796 * 120.00232 * 185.63543 * 8 6 5 11 11 H 1.48500 * 109.47400 * 94.99839 * 10 8 6 12 12 H 1.48504 * 109.47587 * 215.00131 * 10 8 6 13 13 H 1.48503 * 109.47112 * 335.00178 * 10 8 6 14 14 C 1.38228 * 119.99851 * 90.00366 * 5 4 3 15 15 N 1.31562 * 126.45578 * 262.71220 * 14 5 4 16 16 N 1.28417 * 110.49701 * 180.02562 * 15 14 5 17 17 N 1.28902 * 110.35522 * 0.02562 * 16 15 14 18 18 N 1.35434 * 126.45864 * 82.40677 * 14 5 4 19 19 C 1.46499 * 127.38791 * 359.97438 * 18 14 5 20 20 C 1.53005 * 112.84800 * 56.00029 * 19 18 14 21 21 C 1.53780 * 113.61497 * 284.80460 * 19 18 14 22 22 C 1.53958 * 87.01909 * 220.04613 * 21 19 18 23 23 C 1.53782 * 87.11176 * 25.36259 * 22 21 19 24 24 H 1.09005 * 109.46831 * 60.00253 * 1 2 3 25 25 H 1.08999 * 109.47246 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47269 * 300.00073 * 1 2 3 27 27 H 1.08998 * 109.47176 * 59.99703 * 3 2 1 28 28 H 1.09001 * 109.46822 * 299.99779 * 3 2 1 29 29 H 1.08999 * 109.46682 * 185.00257 * 4 3 2 30 30 H 1.09003 * 109.46839 * 304.99719 * 4 3 2 31 31 H 0.97001 * 119.99882 * 185.00132 * 9 8 6 32 32 H 1.09000 * 109.46945 * 64.15357 * 20 19 18 33 33 H 1.09006 * 109.46848 * 184.15490 * 20 19 18 34 34 H 1.08998 * 109.47184 * 304.15255 * 20 19 18 35 35 H 1.08993 * 113.61453 * 334.56597 * 21 19 18 36 36 H 1.09000 * 113.61550 * 105.47033 * 21 19 18 37 37 H 1.08998 * 113.53925 * 270.81071 * 22 21 19 38 38 H 1.08996 * 113.74037 * 139.94486 * 22 21 19 39 39 H 1.08994 * 113.61333 * 220.08787 * 23 22 21 40 40 H 1.09001 * 113.68716 * 89.19610 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.0968 -0.7969 -1.3368 7 1 3.7935 -1.4184 -0.5072 8 6 4.6093 -1.3782 -2.4883 9 7 5.0814 -0.6197 -3.4540 10 14 4.6289 -3.2375 -2.6668 11 1 3.4199 -3.6763 -3.4092 12 1 5.8447 -3.6505 -3.4128 13 1 4.6375 -3.8641 -1.3205 14 6 4.2689 1.3534 -2.3491 15 7 3.4665 1.6207 -3.3569 16 7 4.0516 2.3848 -4.2072 17 7 5.2488 2.6578 -3.8151 18 7 5.4342 2.0018 -2.5856 19 6 6.6324 2.0136 -1.7428 20 6 7.1646 0.6099 -1.4470 21 6 6.4969 2.8973 -0.4916 22 6 7.9498 3.3392 -0.7448 23 6 7.7149 2.9938 -2.2248 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.9785 2.1765 0.0890 30 1 3.8515 0.5682 0.8410 31 1 5.3724 -1.0210 -4.2878 32 1 7.4902 0.1416 -2.3759 33 1 8.0078 0.6784 -0.7595 34 1 6.3750 0.0098 -0.9948 35 1 5.7703 3.7021 -0.6022 36 1 6.3661 2.3313 0.4306 37 1 8.6894 2.7020 -0.2598 38 1 8.1232 4.4003 -0.5662 39 1 8.5660 2.5057 -2.6996 40 1 7.3220 3.8244 -2.8112 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262218617.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:10 Heat of formation + Delta-G solvation = 121.479198 kcal Electronic energy + Delta-G solvation = -24217.595591 eV Core-core repulsion = 20879.374433 eV Total energy + Delta-G solvation = -3338.221158 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.26033 -38.80053 -37.54982 -35.79638 -32.04617 -31.90864 -30.14444 -28.56217 -28.24350 -25.91979 -25.53891 -24.54918 -23.78578 -22.13667 -21.54299 -20.16247 -18.46536 -17.58301 -16.39943 -16.02349 -15.67375 -15.08135 -14.84722 -14.51868 -14.27873 -14.03559 -13.53702 -13.22403 -12.80541 -12.33563 -12.27188 -12.07326 -11.90482 -11.69041 -11.31770 -11.26427 -11.17697 -11.01420 -10.85084 -10.67551 -10.59991 -10.43100 -10.31987 -10.06937 -9.98013 -9.35171 -9.09223 -8.97319 -8.81605 -8.47882 -7.49677 -6.01678 -3.55968 2.65831 3.22921 3.31267 3.39045 3.39474 4.09124 4.24394 4.35544 4.67646 4.77164 4.82079 4.96684 5.11956 5.28641 5.56882 5.65629 5.74188 5.75562 5.79481 5.82778 5.87403 5.92462 5.97590 6.02756 6.07227 6.08109 6.17640 6.30826 6.45237 6.53657 6.63007 6.80583 6.99408 7.05186 7.26855 7.50416 7.61337 7.75949 8.11534 8.98107 9.43600 9.80737 10.22024 11.02802 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.008963 C = 0.007253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.515364 B = 3123.191323 C = 3859.660781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.364 6.364 3 C 0.042 3.958 4 C 0.154 3.846 5 N -0.508 5.508 6 C -0.253 4.253 7 H 0.100 0.900 8 C 0.007 3.993 9 N -0.899 5.899 10 Si 0.923 3.077 11 H -0.285 1.285 12 H -0.292 1.292 13 H -0.277 1.277 14 C 0.588 3.412 15 N -0.356 5.356 16 N -0.066 5.066 17 N -0.134 5.134 18 N -0.370 5.370 19 C 0.178 3.822 20 C -0.134 4.134 21 C -0.143 4.143 22 C -0.136 4.136 23 C -0.131 4.131 24 H 0.036 0.964 25 H 0.078 0.922 26 H 0.028 0.972 27 H 0.037 0.963 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.266 0.734 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.100 0.900 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.005 5.121 9.886 11.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.282 6.282 3 C -0.037 4.037 4 C 0.028 3.972 5 N -0.230 5.230 6 C -0.380 4.380 7 H 0.117 0.883 8 C -0.192 4.192 9 N -0.543 5.543 10 Si 0.752 3.248 11 H -0.212 1.212 12 H -0.218 1.218 13 H -0.202 1.202 14 C 0.226 3.774 15 N -0.215 5.215 16 N -0.063 5.063 17 N -0.121 5.121 18 N -0.172 5.172 19 C 0.092 3.908 20 C -0.192 4.192 21 C -0.182 4.182 22 C -0.174 4.174 23 C -0.169 4.169 24 H 0.055 0.945 25 H 0.097 0.903 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.932 5.422 8.541 10.300 hybrid contribution 0.134 -1.254 0.337 1.306 sum 2.067 4.168 8.879 10.024 Atomic orbital electron populations 1.22635 0.82829 1.01937 0.98933 1.88050 1.17959 1.27122 1.95055 1.23266 0.96457 0.85159 0.98851 1.21068 0.90983 0.97167 0.88020 1.40527 1.74835 1.02929 1.04728 1.19388 1.36958 0.79041 1.02657 0.88276 1.24868 0.98629 0.99103 0.96619 1.69119 1.45025 1.34053 1.06097 0.85936 0.77198 0.83843 0.77827 1.21207 1.21793 1.20172 1.20315 0.82355 0.86063 0.88655 1.74682 1.28156 1.16730 1.01890 1.77606 1.00106 1.08793 1.19764 1.81982 1.13581 1.21496 0.95044 1.51859 1.11721 1.37590 1.16017 1.21902 0.83252 0.96547 0.89124 1.21836 1.01427 0.93597 1.02332 1.23462 0.97368 0.99240 0.98103 1.22766 0.96510 1.01334 0.96827 1.23184 0.98004 0.99246 0.96464 0.94520 0.90321 0.95317 0.94493 0.93388 0.92159 0.90486 0.92166 0.91581 0.92897 0.88133 0.90202 0.90361 0.89807 0.91054 0.90936 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.62 16 2 O -0.36 -6.92 10.18 -35.23 -0.36 -7.28 16 3 C 0.04 0.73 6.28 37.16 0.23 0.96 16 4 C 0.15 2.79 6.08 -4.04 -0.02 2.77 16 5 N -0.51 -11.54 2.02 -116.59 -0.24 -11.78 16 6 C -0.25 -6.22 7.78 -15.07 -0.12 -6.34 16 7 H 0.10 2.40 7.83 -52.49 -0.41 1.99 16 8 C 0.01 0.17 5.01 -17.46 -0.09 0.08 16 9 N -0.90 -24.71 9.62 55.49 0.53 -24.17 16 10 Si 0.92 21.28 29.56 -169.99 -5.02 16.26 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 14 C 0.59 14.40 4.53 -320.35 -1.45 12.95 16 15 N -0.36 -9.63 11.80 30.10 0.36 -9.28 16 16 N -0.07 -1.76 13.38 60.35 0.81 -0.95 16 17 N -0.13 -3.29 13.10 60.35 0.79 -2.50 16 18 N -0.37 -8.37 3.34 -48.36 -0.16 -8.53 16 19 C 0.18 3.25 1.60 -131.00 -0.21 3.04 16 20 C -0.13 -2.51 8.56 37.16 0.32 -2.19 16 21 C -0.14 -2.08 6.54 -25.83 -0.17 -2.25 16 22 C -0.14 -1.68 7.74 -25.83 -0.20 -1.88 16 23 C -0.13 -2.04 7.14 -25.92 -0.19 -2.23 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.06 0.98 7.07 -51.93 -0.37 0.61 16 30 H 0.08 1.29 8.04 -51.93 -0.42 0.87 16 31 H 0.27 7.53 8.32 -40.82 -0.34 7.19 16 32 H 0.07 1.41 8.13 -51.93 -0.42 0.98 16 33 H 0.05 0.80 7.31 -51.93 -0.38 0.42 16 34 H 0.10 2.13 5.27 -51.93 -0.27 1.86 16 35 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 37 H 0.08 0.92 7.61 -51.93 -0.39 0.52 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 40 H 0.09 1.53 7.72 -51.93 -0.40 1.13 16 LS Contribution 327.06 15.07 4.93 4.93 Total: -1.00 -30.96 327.06 -5.15 -36.10 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.00 Total: 0.67 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: -0.78 Total: 6.53 kcal Atomic # 7 Polarization: -59.30 SS G_CDS: 2.09 Total: -57.21 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.36 Total: -7.28 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.96 -5.15 -36.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262218617.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.583 kcal (2) G-P(sol) polarization free energy of solvation -30.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds