Wall clock time and date at job start Fri Apr 10 2020 14:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47340 * 283.42375 * 3 2 1 5 5 C 1.36882 * 119.99862 * 274.19353 * 4 3 2 6 6 H 1.07998 * 119.99648 * 138.88587 * 5 4 3 7 7 C 1.39037 * 120.00032 * 318.89351 * 5 4 3 8 8 N 1.31368 * 120.00339 * 161.60923 * 7 5 4 9 9 Si 1.86800 * 119.99907 * 341.60856 * 7 5 4 10 10 H 1.48496 * 109.47020 * 92.20791 * 9 7 5 11 11 H 1.48502 * 109.46946 * 212.20770 * 9 7 5 12 12 H 1.48501 * 109.47184 * 332.20609 * 9 7 5 13 13 C 1.34772 * 119.99994 * 94.18871 * 4 3 2 14 14 O 1.21600 * 119.99791 * 184.61001 * 13 4 3 15 15 C 1.47655 * 120.00458 * 4.33654 * 13 4 3 16 16 C 1.39706 * 120.14916 * 304.38147 * 15 13 4 17 17 C 1.37881 * 119.90786 * 179.72055 * 16 15 13 18 18 C 1.38405 * 120.21383 * 0.56655 * 17 16 15 19 19 C 1.38488 * 120.30642 * 359.68473 * 18 17 16 20 20 F 1.35102 * 119.95804 * 180.02562 * 19 18 17 21 21 C 1.38360 * 120.08419 * 0.03550 * 19 18 17 22 22 Cl 1.73604 * 120.10701 * 180.02562 * 21 19 18 23 23 H 1.08993 * 109.46961 * 163.41904 * 3 2 1 24 24 H 1.08998 * 109.46963 * 43.42211 * 3 2 1 25 25 H 0.96998 * 120.00160 * 179.97438 * 8 7 5 26 26 H 1.08003 * 120.04398 * 359.97438 * 16 15 13 27 27 H 1.08003 * 119.89181 * 180.27171 * 17 16 15 28 28 H 1.08007 * 119.85039 * 179.70222 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0966 -0.3198 1.3435 5 6 3.2425 0.6738 2.2736 6 1 2.9498 0.5009 3.2987 7 6 3.7675 1.9054 1.8987 8 7 3.5825 2.9583 2.6623 9 14 4.7359 2.0631 0.3091 10 1 3.8189 2.4507 -0.7927 11 1 5.7843 3.1025 0.4693 12 1 5.3743 0.7616 -0.0128 13 6 3.4021 -1.5928 1.6635 14 8 3.7272 -1.8723 2.8015 15 6 3.3364 -2.6491 0.6340 16 6 2.1552 -2.8587 -0.0819 17 6 2.1011 -3.8427 -1.0462 18 6 3.2099 -4.6315 -1.2993 19 6 4.3837 -4.4349 -0.5914 20 9 5.4619 -5.2086 -0.8445 21 6 4.4537 -3.4473 0.3751 22 17 5.9251 -3.1999 1.2625 23 1 2.9709 0.9857 -0.2932 24 1 2.9717 -0.7456 -0.7064 25 1 3.9491 3.8174 2.4009 26 1 1.2868 -2.2481 0.1169 27 1 1.1891 -4.0016 -1.6026 28 1 3.1595 -5.4038 -2.0527 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000079860433.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:04 Heat of formation + Delta-G solvation = -22.167007 kcal Electronic energy + Delta-G solvation = -19541.268770 eV Core-core repulsion = 16112.389903 eV Total energy + Delta-G solvation = -3428.878867 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.031 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.05078 -41.51042 -39.36635 -38.05824 -37.56010 -36.53137 -34.30636 -32.33129 -31.61256 -29.50661 -27.47344 -24.73241 -23.83617 -21.49018 -20.44032 -19.07331 -18.45828 -17.81199 -17.78717 -17.42392 -17.12983 -16.81024 -15.97712 -15.60626 -15.40650 -15.17972 -14.76508 -14.49262 -14.25317 -14.11639 -13.91440 -13.67952 -13.30966 -13.09135 -12.84644 -12.76002 -12.62331 -12.22876 -12.05184 -11.82628 -11.18583 -10.70708 -10.08465 -10.05677 -9.85529 -8.54401 -6.28939 -0.35524 -0.16540 0.93064 1.17175 1.32932 1.37518 1.45888 1.64238 1.67782 2.15778 2.26675 2.50426 2.74341 2.97970 3.11907 3.42977 3.71213 3.78441 3.95021 4.06748 4.11985 4.30857 4.63411 4.78868 4.99180 5.12545 5.40570 5.57313 5.96952 6.31307 6.40144 6.75115 7.05222 7.55240 8.61315 Molecular weight = 282.03amu Principal moments of inertia in cm(-1) A = 0.018578 B = 0.007796 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.804214 B = 3590.633887 C = 4313.139235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.220 3.780 3 C 0.174 3.826 4 N -0.461 5.461 5 C -0.339 4.339 6 H 0.052 0.948 7 C 0.022 3.978 8 N -0.901 5.901 9 Si 0.918 3.082 10 H -0.220 1.220 11 H -0.281 1.281 12 H -0.240 1.240 13 C 0.514 3.486 14 O -0.569 6.569 15 C -0.098 4.098 16 C -0.104 4.104 17 C -0.062 4.062 18 C -0.105 4.105 19 C 0.103 3.897 20 F -0.127 7.127 21 C -0.059 4.059 22 Cl -0.055 7.055 23 H 0.114 0.886 24 H 0.156 0.844 25 H 0.284 0.716 26 H 0.131 0.869 27 H 0.190 0.810 28 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.730 -12.915 -16.208 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.099 4.099 3 C 0.048 3.952 4 N -0.183 5.183 5 C -0.467 4.467 6 H 0.070 0.930 7 C -0.182 4.182 8 N -0.536 5.536 9 Si 0.738 3.262 10 H -0.145 1.145 11 H -0.207 1.207 12 H -0.163 1.163 13 C 0.303 3.697 14 O -0.449 6.449 15 C -0.102 4.102 16 C -0.124 4.124 17 C -0.080 4.080 18 C -0.123 4.123 19 C 0.083 3.917 20 F -0.106 7.106 21 C -0.088 4.088 22 Cl -0.026 7.026 23 H 0.131 0.869 24 H 0.173 0.827 25 H 0.094 0.906 26 H 0.149 0.851 27 H 0.207 0.793 28 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -0.580 -12.832 -15.467 20.106 hybrid contribution 1.333 0.728 0.684 1.666 sum 0.754 -12.104 -14.784 19.122 Atomic orbital electron populations 1.81104 1.13295 1.09909 1.08457 1.29742 0.95509 0.92064 0.92549 1.19859 0.81202 1.06308 0.87822 1.43439 1.57279 1.06236 1.11307 1.18562 1.44473 0.91751 0.91899 0.93042 1.26193 0.95699 0.93906 1.02449 1.69792 1.41913 1.00582 1.41333 0.86283 0.80084 0.80428 0.79376 1.14464 1.20724 1.16271 1.18650 0.79632 0.83131 0.88272 1.90701 1.50025 1.81663 1.22546 1.19739 0.94764 0.97327 0.98397 1.21568 0.95237 0.99834 0.95712 1.21490 0.99857 0.91512 0.95099 1.21727 0.89277 1.01479 0.99850 1.17455 0.86222 0.91036 0.97010 1.91545 1.53450 1.72610 1.92962 1.21118 0.89709 0.99612 0.98343 1.98407 1.33300 1.96153 1.74729 0.86885 0.82677 0.90578 0.85098 0.79279 0.79033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -16.43 18.54 20.01 0.37 -16.06 15 2 C 0.22 7.60 13.25 89.44 1.19 8.78 15 3 C 0.17 5.87 4.35 84.57 0.37 6.24 15 4 N -0.46 -20.69 2.09 -648.93 -1.35 -22.04 15 5 C -0.34 -18.67 9.30 84.10 0.78 -17.89 15 6 H 0.05 3.37 7.94 -2.91 -0.02 3.35 15 7 C 0.02 1.15 5.37 84.95 0.46 1.60 15 8 N -0.90 -50.89 13.95 21.68 0.30 -50.59 15 9 Si 0.92 36.31 25.05 68.60 1.72 38.03 15 10 H -0.22 -7.13 6.60 99.48 0.66 -6.47 15 11 H -0.28 -11.32 7.11 99.48 0.71 -10.61 15 12 H -0.24 -8.97 7.11 99.48 0.71 -8.27 15 13 C 0.51 22.92 6.50 86.73 0.56 23.49 15 14 O -0.57 -30.60 16.14 -4.03 -0.07 -30.67 15 15 C -0.10 -3.25 4.65 -20.08 -0.09 -3.34 15 16 C -0.10 -2.53 7.74 22.54 0.17 -2.36 15 17 C -0.06 -0.90 10.03 22.22 0.22 -0.67 15 18 C -0.10 -1.50 10.02 22.37 0.22 -1.28 15 19 C 0.10 2.38 7.27 22.36 0.16 2.54 15 20 F -0.13 -3.01 16.83 44.97 0.76 -2.25 15 21 C -0.06 -1.84 6.35 22.66 0.14 -1.70 15 22 Cl -0.06 -1.97 27.09 -2.72 -0.07 -2.05 15 23 H 0.11 3.79 3.16 -2.39 -0.01 3.78 15 24 H 0.16 3.85 5.86 -2.39 -0.01 3.83 15 25 H 0.28 14.65 8.31 -92.71 -0.77 13.88 15 26 H 0.13 3.40 5.49 -2.91 -0.02 3.38 15 27 H 0.19 1.15 8.06 -2.91 -0.02 1.12 15 28 H 0.19 1.14 8.06 -2.91 -0.02 1.11 15 Total: -1.00 -72.13 272.22 7.04 -65.09 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: 1.19 Total: 5.12 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 4.19 Total: 15.42 kcal Atomic # 7 Polarization: -88.00 SS G_CDS: -0.68 Total: -88.68 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.07 Total: -30.67 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.76 Total: -2.25 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 1.72 Total: 38.03 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -0.07 Total: -2.05 kcal Total: -72.13 7.04 -65.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079860433.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.920 kcal (2) G-P(sol) polarization free energy of solvation -72.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds