Wall clock time and date at job start Fri Apr 10 2020 15:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46505 * 109.46997 * 128.58614 * 3 2 1 5 5 C 1.36811 * 120.00036 * 265.54697 * 4 3 2 6 6 H 1.08001 * 119.99953 * 196.02643 * 5 4 3 7 7 C 1.39085 * 120.00120 * 16.02820 * 5 4 3 8 8 N 1.31336 * 120.00037 * 13.53955 * 7 5 4 9 9 Si 1.86800 * 120.00173 * 193.54105 * 7 5 4 10 10 H 1.48500 * 109.47321 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47186 * 120.00207 * 9 7 5 12 12 H 1.48508 * 109.47231 * 239.99938 * 9 7 5 13 13 C 1.34781 * 119.99909 * 85.54812 * 4 3 2 14 14 O 1.21578 * 120.00164 * 4.04038 * 13 4 3 15 15 C 1.47854 * 119.99971 * 184.03108 * 13 4 3 16 16 C 1.40025 * 120.94306 * 306.94874 * 15 13 4 17 17 C 1.37955 * 119.05681 * 179.79695 * 16 15 13 18 18 N 1.31910 * 121.00510 * 0.48608 * 17 16 15 19 19 C 1.31831 * 122.09138 * 359.74116 * 18 17 16 20 20 Cl 1.73593 * 119.59061 * 179.97438 * 19 18 17 21 21 C 1.38662 * 120.82237 * 0.02562 * 19 18 17 22 22 F 1.35103 * 120.54906 * 179.97438 * 21 19 18 23 23 H 4.40639 * 5.51523 * 180.02562 * 4 1 2 24 24 H 1.08992 * 109.47652 * 8.58707 * 3 2 1 25 25 H 1.09003 * 109.47218 * 248.58497 * 3 2 1 26 26 H 0.96998 * 120.00217 * 179.97438 * 8 7 5 27 27 H 1.07997 * 120.47391 * 0.02562 * 16 15 13 28 28 H 1.08000 * 119.49630 * 180.23230 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8624 -1.0797 5 6 3.4489 0.3223 -2.2966 6 1 4.0422 0.8868 -3.0007 7 6 3.0051 -0.9538 -2.6270 8 7 2.0757 -1.5338 -1.9027 9 14 3.7308 -1.8426 -4.1010 10 1 4.7535 -0.9798 -4.7451 11 1 4.3634 -3.1092 -3.6531 12 1 2.6527 -2.1456 -5.0764 13 6 3.2725 2.1872 -0.8741 14 8 3.0632 2.6566 0.2277 15 6 3.6793 3.0696 -1.9885 16 6 4.8283 2.7963 -2.7408 17 6 5.1693 3.6435 -3.7748 18 7 4.4366 4.7042 -4.0540 19 6 3.3497 5.0042 -3.3709 20 17 2.4340 6.4170 -3.7939 21 6 2.9294 4.2059 -2.3179 22 9 1.8150 4.5188 -1.6212 23 1 -1.0501 0.0000 0.0003 24 1 3.0099 -1.0152 -0.1534 25 1 3.0092 0.3761 0.9567 26 1 1.7659 -2.4236 -2.1333 27 1 5.4368 1.9326 -2.5171 28 1 6.0520 3.4374 -4.3620 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491012413.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:05 Heat of formation + Delta-G solvation = 13.545389 kcal Electronic energy + Delta-G solvation = -19531.798623 eV Core-core repulsion = 16104.468362 eV Total energy + Delta-G solvation = -3427.330261 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.031 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.17147 -41.57080 -40.18614 -37.85258 -37.19999 -34.25210 -33.79824 -32.95574 -31.89490 -28.65227 -27.15876 -25.29426 -24.65223 -21.69412 -20.25239 -19.14790 -18.81249 -18.63248 -17.86096 -17.34289 -17.02657 -16.35638 -16.07364 -15.85959 -15.59287 -15.00344 -14.98622 -14.59370 -14.29279 -14.01576 -13.42892 -13.33374 -13.00093 -12.81320 -12.56736 -12.41803 -12.04275 -11.45066 -11.37950 -11.18034 -10.93391 -10.67327 -10.45928 -10.02722 -9.96103 -8.35273 -6.02849 -0.44112 -0.39178 0.48277 1.36344 1.51127 1.63468 1.68553 1.94306 2.28709 2.34525 2.40494 2.69435 2.84970 3.04847 3.38355 3.48262 3.75597 3.86263 4.11757 4.32909 4.55100 4.72595 4.83173 4.96024 5.28056 5.32379 5.35082 5.56488 6.24760 6.39552 6.95118 7.05059 7.28624 7.70298 8.61283 Molecular weight = 282.03amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.007048 C = 0.005754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.481980 B = 3971.865742 C = 4864.767097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.148 4.148 3 C 0.239 3.761 4 N -0.417 5.417 5 C -0.371 4.371 6 H 0.132 0.868 7 C 0.000 4.000 8 N -0.873 5.873 9 Si 0.992 3.008 10 H -0.240 1.240 11 H -0.275 1.275 12 H -0.290 1.290 13 C 0.469 3.531 14 O -0.625 6.625 15 C -0.077 4.077 16 C -0.103 4.103 17 C 0.122 3.878 18 N -0.455 5.455 19 C 0.136 3.864 20 Cl -0.008 7.008 21 C 0.071 3.929 22 F -0.127 7.127 23 H 0.235 0.765 24 H 0.118 0.882 25 H 0.067 0.933 26 H 0.275 0.725 27 H 0.182 0.818 28 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.820 4.118 -6.053 9.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.149 4.149 3 C 0.118 3.882 4 N -0.131 5.131 5 C -0.497 4.497 6 H 0.150 0.850 7 C -0.205 4.205 8 N -0.509 5.509 9 Si 0.814 3.186 10 H -0.163 1.163 11 H -0.200 1.200 12 H -0.217 1.217 13 C 0.258 3.742 14 O -0.515 6.515 15 C -0.089 4.089 16 C -0.123 4.123 17 C -0.035 4.035 18 N -0.166 5.166 19 C -0.029 4.029 20 Cl 0.020 6.980 21 C 0.047 3.953 22 F -0.105 7.105 23 H 0.251 0.749 24 H 0.136 0.864 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.199 0.801 28 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 5.750 4.787 -6.188 9.709 hybrid contribution -1.157 -0.953 0.471 1.572 sum 4.593 3.834 -5.716 8.274 Atomic orbital electron populations 1.25173 0.96462 1.03108 1.02792 1.23493 0.95188 0.98105 0.98109 1.18264 0.84520 0.96513 0.88946 1.43881 1.52708 1.04073 1.12419 1.20620 1.34108 1.00966 0.94028 0.85037 1.26328 0.94662 0.97966 1.01504 1.70167 1.24796 1.15802 1.40159 0.84872 0.78410 0.78498 0.76773 1.16314 1.20022 1.21660 1.18067 0.85605 0.82612 0.87908 1.90655 1.59361 1.75335 1.26103 1.20508 0.96957 0.93669 0.97739 1.22803 0.94407 1.01237 0.93885 1.23474 0.98656 0.86822 0.94522 1.67068 1.03420 1.19415 1.26744 1.21520 0.95098 0.92545 0.93719 1.98395 1.70466 1.36275 1.92833 1.18467 0.86642 0.96192 0.94003 1.91516 1.49163 1.92196 1.77655 0.74867 0.86436 0.91532 0.91502 0.80066 0.75491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.45 19.25 74.32 1.43 -10.01 15 2 C -0.15 -7.26 11.61 31.13 0.36 -6.90 15 3 C 0.24 11.49 5.12 84.57 0.43 11.92 15 4 N -0.42 -20.09 2.59 -648.70 -1.68 -21.77 15 5 C -0.37 -16.64 8.84 84.12 0.74 -15.89 15 6 H 0.13 5.18 4.37 -2.91 -0.01 5.17 15 7 C 0.00 0.01 5.09 84.97 0.43 0.44 15 8 N -0.87 -41.89 8.93 21.69 0.19 -41.69 15 9 Si 0.99 34.46 29.57 68.60 2.03 36.49 15 10 H -0.24 -7.37 7.11 99.48 0.71 -6.66 15 11 H -0.27 -9.46 7.11 99.48 0.71 -8.75 15 12 H -0.29 -10.60 7.11 99.48 0.71 -9.89 15 13 C 0.47 22.84 6.93 86.79 0.60 23.44 15 14 O -0.63 -34.40 16.53 -3.96 -0.07 -34.47 15 15 C -0.08 -3.12 5.13 -19.85 -0.10 -3.22 15 16 C -0.10 -3.08 7.64 22.64 0.17 -2.91 15 17 C 0.12 2.92 11.16 84.61 0.94 3.86 15 18 N -0.46 -13.38 10.31 -186.72 -1.92 -15.31 15 19 C 0.14 4.61 7.28 84.79 0.62 5.22 15 20 Cl -0.01 -0.25 28.78 -2.72 -0.08 -0.32 15 21 C 0.07 2.84 7.29 22.81 0.17 3.00 15 22 F -0.13 -5.61 16.34 44.97 0.73 -4.88 15 23 H 0.23 8.16 7.80 -4.41 -0.03 8.12 15 24 H 0.12 5.59 6.15 -2.39 -0.01 5.58 15 25 H 0.07 3.13 7.50 -2.39 -0.02 3.11 15 26 H 0.27 12.54 8.31 -92.71 -0.77 11.77 15 27 H 0.18 4.70 7.04 -2.91 -0.02 4.68 15 28 H 0.23 2.94 8.06 -2.91 -0.02 2.91 15 Total: -1.00 -63.19 278.95 6.24 -56.95 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 1.23 Total: 16.05 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 5.80 Total: 8.96 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -3.41 Total: -78.77 kcal Atomic # 8 Polarization: -34.40 SS G_CDS: -0.07 Total: -34.47 kcal Atomic # 9 Polarization: -5.61 SS G_CDS: 0.73 Total: -4.88 kcal Atomic # 14 Polarization: 34.46 SS G_CDS: 2.03 Total: 36.49 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -0.08 Total: -0.32 kcal Total: -63.19 6.24 -56.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491012413.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.495 kcal (2) G-P(sol) polarization free energy of solvation -63.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds