Wall clock time and date at job start Fri Apr 10 2020 14:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47347 * 294.25277 * 3 2 1 5 5 C 1.36808 * 119.99995 * 97.38461 * 4 3 2 6 6 H 1.07992 * 120.00151 * 154.39396 * 5 4 3 7 7 C 1.39091 * 119.99860 * 334.40041 * 5 4 3 8 8 N 1.31337 * 120.00264 * 348.77305 * 7 5 4 9 9 Si 1.86803 * 120.00026 * 168.76842 * 7 5 4 10 10 H 1.48499 * 109.46716 * 60.00196 * 9 7 5 11 11 H 1.48499 * 109.47039 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47458 * 300.00384 * 9 7 5 13 13 C 1.34775 * 120.00479 * 277.39067 * 4 3 2 14 14 O 1.21585 * 120.00299 * 184.95371 * 13 4 3 15 15 C 1.47843 * 119.99440 * 4.95247 * 13 4 3 16 16 N 1.32905 * 119.75608 * 6.37252 * 15 13 4 17 17 C 1.31533 * 121.63995 * 179.97438 * 16 15 13 18 18 Cl 1.73598 * 119.52438 * 180.02562 * 17 16 15 19 19 C 1.38827 * 120.94768 * 359.97438 * 17 16 15 20 20 C 1.38438 * 119.40446 * 359.72886 * 19 17 16 21 21 C 1.38949 * 118.49018 * 0.53823 * 20 19 17 22 22 F 1.35096 * 120.48730 * 179.73095 * 21 20 19 23 23 H 4.40639 * 5.51392 * 179.97438 * 4 1 2 24 24 H 1.09006 * 109.47378 * 174.25646 * 3 2 1 25 25 H 1.08997 * 109.47201 * 54.25501 * 3 2 1 26 26 H 0.96997 * 120.00142 * 179.97438 * 8 7 5 27 27 H 1.08000 * 120.29838 * 179.97438 * 19 17 16 28 28 H 1.08004 * 120.75779 * 180.29745 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5665 1.2593 5 6 3.5068 -1.8816 1.3184 6 1 4.2239 -2.2072 2.0573 7 6 2.9617 -2.7994 0.4267 8 7 1.9365 -2.4596 -0.3207 9 14 3.6877 -4.5152 0.2919 10 1 3.5961 -5.1962 1.6083 11 1 2.9319 -5.2943 -0.7216 12 1 5.1119 -4.4194 -0.1178 13 6 3.2174 0.2073 2.3597 14 8 3.7066 -0.2373 3.3802 15 6 2.7134 1.5967 2.3259 16 7 2.0661 2.0376 1.2521 17 6 1.6017 3.2663 1.1825 18 17 0.7636 3.7844 -0.2468 19 6 1.7712 4.1543 2.2360 20 6 2.4341 3.7364 3.3773 21 6 2.9198 2.4353 3.4228 22 9 3.5775 1.9870 4.5143 23 1 -1.0499 0.0001 0.0002 24 1 3.0089 1.0234 -0.1028 25 1 3.0096 -0.5995 -0.8341 26 1 1.5566 -3.0995 -0.9428 27 1 1.3859 5.1609 2.1675 28 1 2.5740 4.4076 4.2118 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798805544.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:56 Heat of formation + Delta-G solvation = 24.232258 kcal Electronic energy + Delta-G solvation = -19726.141685 eV Core-core repulsion = 16299.274841 eV Total energy + Delta-G solvation = -3426.866844 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.031 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.99215 -41.62172 -39.90067 -37.60837 -37.17943 -34.41231 -33.38966 -32.96839 -31.81412 -28.30978 -27.24463 -25.38389 -24.45737 -21.87810 -19.67677 -19.08723 -18.71184 -18.31317 -18.12307 -17.24837 -16.99263 -16.44808 -15.95609 -15.81338 -15.14934 -15.02766 -14.71786 -14.63502 -14.18050 -13.95681 -13.68791 -13.34934 -12.81543 -12.69281 -12.46330 -12.27585 -12.16855 -11.32231 -11.21011 -11.10882 -10.72969 -10.47000 -10.24679 -9.98606 -9.78251 -8.37184 -6.07344 -0.63250 -0.15302 0.70787 1.38106 1.41120 1.51842 1.75563 2.10233 2.35180 2.48183 2.66108 2.77452 3.01177 3.06734 3.34947 3.61031 3.79378 3.96624 4.10443 4.34038 4.62344 4.69685 4.88361 4.98365 5.31207 5.35842 5.55018 5.95563 6.26499 6.43810 6.99570 7.22033 7.37148 7.82238 8.57289 Molecular weight = 282.03amu Principal moments of inertia in cm(-1) A = 0.019805 B = 0.007244 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.466362 B = 3864.164576 C = 5082.730273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.093 4.093 3 C 0.248 3.752 4 N -0.414 5.414 5 C -0.352 4.352 6 H 0.082 0.918 7 C 0.006 3.994 8 N -0.861 5.861 9 Si 0.997 3.003 10 H -0.277 1.277 11 H -0.268 1.268 12 H -0.262 1.262 13 C 0.462 3.538 14 O -0.615 6.615 15 C 0.062 3.938 16 N -0.439 5.439 17 C 0.146 3.854 18 Cl -0.012 7.012 19 C -0.095 4.095 20 C -0.081 4.081 21 C 0.078 3.922 22 F -0.122 7.122 23 H 0.220 0.780 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.278 0.722 27 H 0.205 0.795 28 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.102 15.057 -0.653 15.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.095 4.095 3 C 0.126 3.874 4 N -0.128 5.128 5 C -0.480 4.480 6 H 0.100 0.900 7 C -0.200 4.200 8 N -0.495 5.495 9 Si 0.819 3.181 10 H -0.202 1.202 11 H -0.193 1.193 12 H -0.187 1.187 13 C 0.252 3.748 14 O -0.502 6.502 15 C -0.076 4.076 16 N -0.153 5.153 17 C -0.022 4.022 18 Cl 0.017 6.983 19 C -0.116 4.116 20 C -0.107 4.107 21 C 0.055 3.945 22 F -0.100 7.100 23 H 0.237 0.763 24 H 0.112 0.888 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.222 0.778 28 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.119 14.152 -1.144 14.537 hybrid contribution 0.185 -0.841 0.560 1.027 sum -2.934 13.311 -0.584 13.643 Atomic orbital electron populations 1.24670 0.95899 1.07175 1.01765 1.22633 0.93920 0.94315 0.98611 1.18419 0.85678 0.97090 0.86205 1.43786 1.51944 1.09413 1.07664 1.19734 1.24797 0.83583 1.19861 0.90017 1.26277 0.94772 1.03483 0.95461 1.70078 1.19380 1.37390 1.22687 0.84952 0.78743 0.76213 0.78151 1.20218 1.19286 1.18709 1.18104 0.86802 0.86015 0.83928 1.90624 1.52020 1.75081 1.32493 1.21265 1.00227 0.95118 0.90994 1.67611 1.08010 1.15759 1.23903 1.22261 0.97618 0.90806 0.91509 1.98408 1.74723 1.87991 1.37196 1.22338 0.97254 1.02341 0.89655 1.22054 0.95454 0.92236 1.00918 1.19012 0.96702 0.94548 0.84249 1.91555 1.77852 1.89838 1.50756 0.76287 0.88780 0.90190 0.91170 0.77772 0.77593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -11.90 19.25 74.32 1.43 -10.47 15 2 C -0.09 -4.37 9.19 31.13 0.29 -4.09 15 3 C 0.25 12.00 4.75 84.57 0.40 12.40 15 4 N -0.41 -22.70 2.59 -648.72 -1.68 -24.38 15 5 C -0.35 -20.29 9.24 84.12 0.78 -19.51 15 6 H 0.08 4.96 7.42 -2.91 -0.02 4.94 15 7 C 0.01 0.30 5.06 84.97 0.43 0.73 15 8 N -0.86 -45.35 9.27 21.69 0.20 -45.15 15 9 Si 1.00 42.03 29.57 68.60 2.03 44.06 15 10 H -0.28 -11.88 7.11 99.48 0.71 -11.17 15 11 H -0.27 -10.63 7.11 99.48 0.71 -9.92 15 12 H -0.26 -10.66 7.11 99.48 0.71 -9.95 15 13 C 0.46 25.01 7.52 86.79 0.65 25.66 15 14 O -0.61 -37.13 15.05 -3.98 -0.06 -37.19 15 15 C 0.06 2.65 6.55 41.86 0.27 2.92 15 16 N -0.44 -16.55 4.64 -175.78 -0.82 -17.36 15 17 C 0.15 4.07 7.27 84.88 0.62 4.68 15 18 Cl -0.01 -0.28 29.10 -2.72 -0.08 -0.36 15 19 C -0.10 -1.81 9.88 22.46 0.22 -1.59 15 20 C -0.08 -1.72 10.16 22.49 0.23 -1.49 15 21 C 0.08 2.75 7.31 22.77 0.17 2.92 15 22 F -0.12 -4.85 15.57 44.97 0.70 -4.15 15 23 H 0.22 7.73 7.80 -4.42 -0.03 7.69 15 24 H 0.09 4.17 5.90 -2.38 -0.01 4.16 15 25 H 0.08 4.04 6.62 -2.39 -0.02 4.03 15 26 H 0.28 13.77 8.31 -92.71 -0.77 13.00 15 27 H 0.21 1.79 8.06 -2.91 -0.02 1.77 15 28 H 0.21 2.36 8.06 -2.91 -0.02 2.33 15 Total: -1.00 -72.50 275.45 7.00 -65.50 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 1.22 Total: 6.87 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 5.49 Total: 12.17 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -2.29 Total: -86.89 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -0.06 Total: -37.19 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.70 Total: -4.15 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -72.50 7.00 -65.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798805544.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.729 kcal (2) G-P(sol) polarization free energy of solvation -72.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds