Wall clock time and date at job start Fri Apr 10 2020 14:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39790 * 120.06773 * 57.95367 * 3 2 1 5 5 C 1.37886 * 119.91419 * 179.71780 * 4 3 2 6 6 F 1.35093 * 119.97377 * 180.27582 * 5 4 3 7 7 C 1.39275 * 120.04753 * 0.51907 * 5 4 3 8 8 N 1.39711 * 119.92709 * 179.76019 * 7 5 4 9 9 C 1.34774 * 119.99724 * 273.91184 * 8 7 5 10 10 O 1.21283 * 120.00480 * 355.00210 * 9 8 7 11 11 C 1.50704 * 119.99436 * 175.27826 * 9 8 7 12 12 C 1.50699 * 109.47171 * 179.72578 * 11 9 8 13 13 H 1.08005 * 119.99382 * 359.97438 * 12 11 9 14 14 C 1.37868 * 120.00397 * 179.97438 * 12 11 9 15 15 N 1.31515 * 119.99871 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00269 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47066 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47301 * 120.00127 * 16 14 12 19 19 H 1.48501 * 109.47272 * 240.00078 * 16 14 12 20 20 C 1.39091 * 120.14057 * 359.48295 * 7 5 4 21 21 Cl 1.73602 * 119.95763 * 180.23277 * 20 7 5 22 22 C 1.37871 * 120.08743 * 0.25764 * 20 7 5 23 23 H 1.08008 * 120.04258 * 359.97438 * 4 3 2 24 24 H 0.97001 * 119.99675 * 93.91082 * 8 7 5 25 25 H 1.08999 * 109.47020 * 299.71983 * 11 9 8 26 26 H 1.08991 * 109.47192 * 59.72518 * 11 9 8 27 27 H 0.97000 * 120.00305 * 180.02562 * 15 14 12 28 28 H 1.07992 * 120.02977 * 179.97438 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2687 -0.6410 -1.0254 5 6 4.6475 -0.6334 -1.0254 6 9 5.3259 -1.2483 -2.0188 7 6 5.3414 0.0033 0.0006 8 7 6.7385 0.0052 0.0008 9 6 7.4136 -1.0257 0.5466 10 8 6.8118 -1.9104 1.1176 11 6 8.9169 -1.0759 0.4528 12 6 9.4221 -2.3167 1.1429 13 1 8.7244 -3.0004 1.6036 14 6 10.7749 -2.5793 1.1860 15 7 11.6245 -1.7465 0.6253 16 14 11.4012 -4.1170 2.0419 17 1 10.2518 -4.8824 2.5881 18 1 12.1387 -4.9605 1.0673 19 1 12.3109 -3.7308 3.1504 20 6 4.6465 0.6424 1.0221 21 17 5.5162 1.4397 2.2954 22 6 3.2678 0.6429 1.0248 23 1 2.7307 -1.1384 -1.8189 24 1 7.2226 0.7484 -0.3919 25 1 9.2151 -1.0963 -0.5954 26 1 9.3406 -0.1945 0.9341 27 1 12.5763 -1.9313 0.6553 28 1 2.7291 1.1390 1.8186 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143201324.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:12 Heat of formation + Delta-G solvation = -52.007988 kcal Electronic energy + Delta-G solvation = -18590.331788 eV Core-core repulsion = 15160.158919 eV Total energy + Delta-G solvation = -3430.172869 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.031 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.11165 -41.35453 -39.92325 -37.96950 -37.34672 -35.78895 -35.08841 -31.95885 -31.80055 -30.39904 -26.31516 -24.61970 -24.18250 -21.70181 -20.60369 -19.10274 -18.40650 -18.26572 -17.64728 -17.35723 -16.74329 -16.42875 -15.98453 -15.84948 -15.49188 -15.16381 -14.81734 -14.56240 -14.22128 -14.15780 -13.98679 -13.45282 -13.31875 -13.03722 -12.78119 -12.58346 -12.36783 -12.15690 -12.05070 -11.42379 -10.81525 -10.63181 -10.54091 -10.05256 -9.99895 -8.23712 -6.30275 -0.79201 -0.25268 0.81257 1.41250 1.42665 1.44777 1.47021 1.56906 1.74124 2.08812 2.43765 2.47321 2.52008 3.00211 3.12324 3.67587 3.70814 3.79608 4.20908 4.38072 4.47216 4.65292 4.79223 5.08525 5.13922 5.27251 5.55894 5.75417 6.01750 6.25816 6.49588 6.82648 7.30145 7.41803 8.88296 Molecular weight = 282.03amu Principal moments of inertia in cm(-1) A = 0.025661 B = 0.004400 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.900549 B = 6362.767638 C = 6779.964703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.286 3.714 3 C 0.022 3.978 4 C -0.078 4.078 5 C 0.103 3.897 6 F -0.129 7.129 7 C 0.133 3.867 8 N -0.688 5.688 9 C 0.535 3.465 10 O -0.561 6.561 11 C 0.011 3.989 12 C -0.533 4.533 13 H 0.056 0.944 14 C 0.011 3.989 15 N -0.922 5.922 16 Si 0.961 3.039 17 H -0.275 1.275 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.020 4.020 21 Cl -0.036 7.036 22 C -0.050 4.050 23 H 0.183 0.817 24 H 0.426 0.574 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.267 0.733 28 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.298 8.824 -2.858 17.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.030 4.030 3 C 0.018 3.982 4 C -0.099 4.099 5 C 0.082 3.918 6 F -0.107 7.107 7 C 0.038 3.962 8 N -0.343 5.343 9 C 0.326 3.674 10 O -0.437 6.437 11 C -0.028 4.028 12 C -0.572 4.572 13 H 0.074 0.926 14 C -0.187 4.187 15 N -0.562 5.562 16 Si 0.786 3.214 17 H -0.200 1.200 18 H -0.200 1.200 19 H -0.199 1.199 20 C -0.049 4.049 21 Cl -0.007 7.007 22 C -0.071 4.071 23 H 0.200 0.800 24 H 0.267 0.733 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -17.153 8.251 -2.411 19.186 hybrid contribution 1.649 -0.416 0.066 1.702 sum -15.504 7.834 -2.345 17.529 Atomic orbital electron populations 1.81341 1.12568 1.08749 1.08104 1.25036 0.91669 0.93107 0.93178 1.15313 0.84243 1.02042 0.96616 1.21290 0.90598 0.98343 0.99674 1.17642 0.90222 0.96885 0.87035 1.91557 1.80355 1.80352 1.58442 1.17787 0.85124 0.99130 0.94152 1.43460 1.02863 1.25021 1.62969 1.21630 0.91453 0.79400 0.74956 1.90558 1.71151 1.39232 1.42798 1.19079 0.85621 0.98921 0.99171 1.21363 0.92367 1.07589 1.35841 0.92554 1.25732 0.96873 0.99968 0.96162 1.70025 1.02905 1.37928 1.45351 0.85452 0.78054 0.79365 0.78514 1.19958 1.19962 1.19893 1.20908 0.92757 0.99925 0.91285 1.98426 1.76619 1.77270 1.48370 1.21217 0.90432 0.97098 0.98359 0.79986 0.73294 0.93510 0.93261 0.92429 0.80163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -9.15 18.54 19.01 0.35 -8.80 15 2 C 0.29 4.70 15.33 88.33 1.35 6.05 15 3 C 0.02 0.32 5.74 -21.30 -0.12 0.20 15 4 C -0.08 -1.25 9.72 22.56 0.22 -1.03 15 5 C 0.10 2.45 7.30 22.44 0.16 2.61 15 6 F -0.13 -3.60 17.07 44.97 0.77 -2.83 15 7 C 0.13 3.51 5.28 38.34 0.20 3.72 15 8 N -0.69 -21.43 4.44 -303.20 -1.35 -22.78 15 9 C 0.53 22.83 7.78 87.66 0.68 23.52 15 10 O -0.56 -27.85 15.44 -3.04 -0.05 -27.90 15 11 C 0.01 0.56 5.46 29.10 0.16 0.72 15 12 C -0.53 -30.36 8.92 25.60 0.23 -30.13 15 13 H 0.06 3.38 6.75 -2.91 -0.02 3.37 15 14 C 0.01 0.64 5.46 84.65 0.46 1.10 15 15 N -0.92 -52.56 13.29 21.44 0.28 -52.28 15 16 Si 0.96 44.45 29.54 68.60 2.03 46.47 15 17 H -0.27 -12.82 7.11 99.48 0.71 -12.11 15 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 20 C -0.02 -0.44 6.33 22.39 0.14 -0.30 15 21 Cl -0.04 -0.86 28.42 -2.72 -0.08 -0.94 15 22 C -0.05 -0.77 9.52 22.54 0.21 -0.55 15 23 H 0.18 1.93 8.06 -2.91 -0.02 1.91 15 24 H 0.43 10.79 8.83 -92.71 -0.82 9.97 15 25 H 0.05 2.32 8.14 -2.39 -0.02 2.30 15 26 H 0.05 2.41 8.14 -2.39 -0.02 2.39 15 27 H 0.27 14.28 8.31 -92.71 -0.77 13.51 15 28 H 0.18 1.80 8.06 -2.91 -0.02 1.78 15 Total: -1.00 -69.04 291.17 6.09 -62.95 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: 0.43 Total: 0.19 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 3.71 Total: 5.90 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -0.71 Total: -83.85 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.05 Total: -27.90 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.77 Total: -2.83 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -69.04 6.09 -62.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201324.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.940 kcal (2) G-P(sol) polarization free energy of solvation -69.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds