Wall clock time and date at job start Fri Apr 10 2020 14:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47294 * 61.83548 * 3 2 1 5 5 C 1.36811 * 120.00283 * 98.91191 * 4 3 2 6 6 H 1.08001 * 120.00012 * 161.71627 * 5 4 3 7 7 C 1.39090 * 119.99459 * 341.72075 * 5 4 3 8 8 N 1.31334 * 120.00365 * 339.08043 * 7 5 4 9 9 Si 1.86804 * 119.99560 * 159.08814 * 7 5 4 10 10 H 1.48499 * 109.47221 * 94.98262 * 9 7 5 11 11 H 1.48501 * 109.46657 * 214.97745 * 9 7 5 12 12 H 1.48497 * 109.47276 * 334.97880 * 9 7 5 13 13 C 1.34783 * 119.99810 * 278.91430 * 4 3 2 14 14 O 1.21588 * 119.99762 * 179.21722 * 13 4 3 15 15 C 1.47843 * 120.00110 * 359.48985 * 13 4 3 16 16 N 1.32897 * 119.75361 * 2.73274 * 15 13 4 17 17 C 1.31462 * 121.68685 * 179.75179 * 16 15 13 18 18 C 1.38617 * 120.99959 * 0.52726 * 17 16 15 19 19 C 1.38624 * 119.39594 * 359.74891 * 18 17 16 20 20 Cl 1.73595 * 120.77469 * 179.97438 * 19 18 17 21 21 C 1.39067 * 118.44630 * 359.97438 * 19 18 17 22 22 F 1.35099 * 120.50641 * 180.02562 * 21 19 18 23 23 H 4.40644 * 5.51414 * 180.02562 * 4 1 2 24 24 H 1.09000 * 109.46871 * 301.83569 * 3 2 1 25 25 H 1.08997 * 109.47213 * 181.83789 * 3 2 1 26 26 H 0.96998 * 119.99979 * 180.02562 * 8 7 5 27 27 H 1.08005 * 119.50299 * 180.29322 * 17 16 15 28 28 H 1.07994 * 120.30415 * 179.71523 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1347 -0.6510 -1.2176 5 6 3.5354 0.1055 -2.2848 6 1 4.1588 -0.3300 -3.0517 7 6 3.1401 1.4355 -2.3818 8 7 2.0882 1.8580 -1.7187 9 14 4.1054 2.6207 -3.4557 10 1 3.4710 2.7033 -4.7958 11 1 4.1108 3.9660 -2.8269 12 1 5.5015 2.1351 -3.5979 13 6 3.1894 -1.9960 -1.2866 14 8 3.5815 -2.5372 -2.3023 15 6 2.7669 -2.8133 -0.1294 16 7 2.2829 -2.2190 0.9563 17 6 1.8916 -2.9088 2.0048 18 6 1.9794 -4.2920 2.0226 19 6 2.4831 -4.9562 0.9150 20 17 2.6096 -6.6875 0.8991 21 6 2.8845 -4.2032 -0.1830 22 9 3.3809 -4.8076 -1.2846 23 1 -1.0499 0.0001 -0.0003 24 1 3.0096 -0.5413 0.8731 25 1 3.0089 1.0279 0.0330 26 1 1.8123 2.7854 -1.7867 27 1 1.4992 -2.3896 2.8668 28 1 1.6590 -4.8472 2.8918 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321199549.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:59 Heat of formation + Delta-G solvation = 25.585369 kcal Electronic energy + Delta-G solvation = -19583.464802 eV Core-core repulsion = 16156.656633 eV Total energy + Delta-G solvation = -3426.808169 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.031 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.03865 -41.59499 -39.87410 -37.91023 -37.17336 -34.32594 -33.14227 -32.99432 -32.09628 -28.32866 -27.25158 -25.30770 -24.54415 -21.86433 -19.72047 -19.12682 -18.75356 -18.33207 -18.02353 -17.19226 -17.08534 -16.35009 -16.00831 -15.83279 -15.39226 -14.85616 -14.63746 -14.61433 -14.13468 -13.85243 -13.80150 -13.51799 -13.34479 -12.79720 -12.57382 -12.26284 -12.13078 -11.26536 -11.18929 -10.81931 -10.71090 -10.54151 -10.22249 -10.14184 -9.78551 -8.45117 -6.00587 -0.60441 -0.27025 0.63752 1.34997 1.42252 1.55719 1.78888 2.08351 2.32376 2.45573 2.61360 2.67286 3.00678 3.04645 3.35364 3.51252 3.70614 4.04569 4.19222 4.29861 4.60519 4.63691 4.95472 5.03469 5.36056 5.42157 5.51684 5.92595 6.31540 6.60896 7.00142 7.21872 7.27832 7.85297 8.51744 Molecular weight = 282.03amu Principal moments of inertia in cm(-1) A = 0.028477 B = 0.005671 C = 0.004926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.012361 B = 4936.270487 C = 5682.965050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.116 4.116 3 C 0.227 3.773 4 N -0.406 5.406 5 C -0.354 4.354 6 H 0.081 0.919 7 C 0.009 3.991 8 N -0.851 5.851 9 Si 0.993 3.007 10 H -0.276 1.276 11 H -0.260 1.260 12 H -0.269 1.269 13 C 0.449 3.551 14 O -0.625 6.625 15 C 0.069 3.931 16 N -0.441 5.441 17 C 0.108 3.892 18 C -0.105 4.105 19 C -0.039 4.039 20 Cl -0.023 7.023 21 C 0.072 3.928 22 F -0.121 7.121 23 H 0.228 0.772 24 H 0.124 0.876 25 H 0.085 0.915 26 H 0.281 0.719 27 H 0.222 0.778 28 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.809 -7.286 13.523 15.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.117 4.117 3 C 0.105 3.895 4 N -0.120 5.120 5 C -0.481 4.481 6 H 0.099 0.901 7 C -0.198 4.198 8 N -0.486 5.486 9 Si 0.815 3.185 10 H -0.202 1.202 11 H -0.184 1.184 12 H -0.193 1.193 13 C 0.240 3.760 14 O -0.513 6.513 15 C -0.068 4.068 16 N -0.153 5.153 17 C -0.052 4.052 18 C -0.125 4.125 19 C -0.075 4.075 20 Cl 0.007 6.993 21 C 0.048 3.952 22 F -0.099 7.099 23 H 0.245 0.755 24 H 0.141 0.859 25 H 0.103 0.897 26 H 0.091 0.909 27 H 0.238 0.762 28 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -2.719 -6.576 12.991 14.812 hybrid contribution 0.315 -0.601 -1.325 1.489 sum -2.404 -7.177 11.665 13.906 Atomic orbital electron populations 1.24959 0.96168 1.04851 1.02710 1.23038 0.94362 0.96499 0.97848 1.18899 0.85272 0.98517 0.86795 1.43881 1.50574 1.03677 1.13838 1.19818 1.30647 0.93560 1.04116 0.90090 1.26198 0.95669 0.98817 0.99110 1.70158 1.19842 1.18050 1.40521 0.84947 0.78563 0.77235 0.77717 1.20211 1.18418 1.19315 1.17994 0.87730 0.82956 0.87353 1.90624 1.55451 1.71878 1.33374 1.21322 1.00948 0.89646 0.94869 1.68334 1.08597 1.38926 0.99473 1.23922 0.93615 0.90985 0.96634 1.22706 0.96618 0.95647 0.97554 1.21530 1.03555 0.87308 0.95068 1.98398 1.96471 1.06005 1.98466 1.18655 1.00865 0.90734 0.84959 1.91546 1.84527 1.82670 1.51198 0.75500 0.85890 0.89727 0.90913 0.76174 0.77797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -10.78 19.25 74.32 1.43 -9.35 15 2 C -0.12 -5.18 10.11 31.12 0.31 -4.86 15 3 C 0.23 10.42 4.75 84.57 0.40 10.82 15 4 N -0.41 -21.99 2.61 -648.72 -1.69 -23.68 15 5 C -0.35 -20.28 9.31 84.12 0.78 -19.50 15 6 H 0.08 4.97 7.39 -2.91 -0.02 4.95 15 7 C 0.01 0.46 4.87 84.97 0.41 0.87 15 8 N -0.85 -43.61 9.63 21.69 0.21 -43.40 15 9 Si 0.99 41.01 29.60 68.60 2.03 43.04 15 10 H -0.28 -11.41 7.11 99.48 0.71 -10.70 15 11 H -0.26 -9.87 7.11 99.48 0.71 -9.16 15 12 H -0.27 -11.16 7.11 99.48 0.71 -10.45 15 13 C 0.45 24.48 7.51 86.78 0.65 25.13 15 14 O -0.62 -38.70 14.98 -3.99 -0.06 -38.76 15 15 C 0.07 2.96 6.60 41.85 0.28 3.23 15 16 N -0.44 -15.08 4.81 -184.88 -0.89 -15.97 15 17 C 0.11 2.34 11.18 84.84 0.95 3.29 15 18 C -0.10 -1.95 9.93 22.45 0.22 -1.73 15 19 C -0.04 -1.07 6.37 22.56 0.14 -0.93 15 20 Cl -0.02 -0.53 28.75 -2.72 -0.08 -0.61 15 21 C 0.07 2.79 7.29 22.79 0.17 2.96 15 22 F -0.12 -5.40 15.21 44.97 0.68 -4.71 15 23 H 0.23 7.16 7.80 -4.42 -0.03 7.13 15 24 H 0.12 4.96 5.44 -2.39 -0.01 4.94 15 25 H 0.08 4.07 6.27 -2.39 -0.01 4.05 15 26 H 0.28 13.32 8.31 -92.71 -0.77 12.55 15 27 H 0.22 2.56 8.06 -2.91 -0.02 2.54 15 28 H 0.21 1.71 8.06 -2.91 -0.02 1.69 15 Total: -1.00 -73.79 275.39 7.18 -66.62 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 1.22 Total: 7.53 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: 5.75 Total: 9.94 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -2.37 Total: -83.04 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -0.06 Total: -38.76 kcal Atomic # 9 Polarization: -5.40 SS G_CDS: 0.68 Total: -4.71 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.04 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.61 kcal Total: -73.79 7.18 -66.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321199549.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.202 kcal (2) G-P(sol) polarization free energy of solvation -73.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds