Wall clock time and date at job start Fri Apr 10 2020 14:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86800 * 119.99622 * 2 1 4 4 H 1.48502 * 109.47103 * 269.99409 * 3 2 1 5 5 H 1.48494 * 109.47502 * 29.99833 * 3 2 1 6 6 H 1.48507 * 109.47004 * 149.99921 * 3 2 1 7 7 C 1.38791 * 120.00076 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00132 * 0.02562 * 7 2 1 9 9 S 1.76200 * 120.00258 * 180.02562 * 7 2 1 10 10 C 1.81000 * 100.00312 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47036 * 179.97438 * 10 9 7 12 12 O 1.20830 * 120.00177 * 0.02562 * 11 10 9 13 13 O 1.34270 * 119.99994 * 180.02562 * 11 10 9 14 14 C 1.35933 * 117.00039 * 185.77704 * 13 11 10 15 15 C 1.38865 * 119.98165 * 248.73058 * 14 13 11 16 16 C 1.38252 * 120.24843 * 179.72228 * 15 14 13 17 17 C 1.37996 * 120.21047 * 0.55296 * 16 15 14 18 18 C 1.39623 * 119.96007 * 359.72825 * 17 16 15 19 19 C 1.47740 * 120.12276 * 180.02562 * 18 17 16 20 20 O 1.21468 * 119.99851 * 179.97438 * 19 18 17 21 21 O 1.34703 * 119.99988 * 359.96678 * 19 18 17 22 22 C 1.38441 * 119.98086 * 69.00657 * 14 13 11 23 23 H 0.97003 * 119.99764 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46485 * 59.99975 * 10 9 7 25 25 H 1.08995 * 109.47308 * 300.00270 * 10 9 7 26 26 H 1.07999 * 119.87058 * 0.02562 * 15 14 13 27 27 H 1.07994 * 119.89404 * 180.27552 * 16 15 14 28 28 H 1.07994 * 120.02123 * 179.73896 * 17 16 15 29 29 H 0.96702 * 117.00354 * 179.97438 * 21 19 18 30 30 H 1.08001 * 120.10387 * 359.97380 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5479 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0867 -2.9845 0.0025 11 6 5.5731 -3.2324 0.0026 12 8 6.3412 -2.2997 0.0024 13 8 6.0440 -4.4898 0.0030 14 6 7.3889 -4.6451 0.1250 15 6 8.1329 -5.1184 -0.9477 16 6 9.5018 -5.2730 -0.8316 17 6 10.1368 -4.9687 0.3553 18 6 9.3964 -4.4978 1.4413 19 6 10.0726 -4.1704 2.7135 20 8 9.4263 -3.7604 3.6568 21 8 11.4056 -4.3268 2.8274 22 6 8.0153 -4.3368 1.3205 23 1 -0.4850 0.8401 -0.0004 24 1 3.6440 -3.4321 -0.8874 25 1 3.6434 -3.4310 0.8926 26 1 7.6409 -5.3619 -1.8778 27 1 10.0755 -5.6373 -1.6709 28 1 11.2057 -5.0947 0.4439 29 1 11.8033 -4.0992 3.6790 30 1 7.4371 -3.9725 2.1568 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610623641.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:26 Heat of formation + Delta-G solvation = -138.534408 kcal Electronic energy + Delta-G solvation = -18476.044074 eV Core-core repulsion = 15135.330398 eV Total energy + Delta-G solvation = -3340.713676 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.044 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.40162 -40.45112 -38.58472 -36.68379 -36.38746 -32.53084 -31.74959 -31.11283 -29.53463 -25.73770 -25.19762 -23.75875 -21.77792 -21.11104 -18.70309 -18.07584 -18.00053 -17.01223 -16.63476 -16.40789 -16.13105 -15.88944 -15.08359 -14.87441 -14.43878 -14.14291 -13.71852 -13.52718 -13.01568 -12.86095 -12.70122 -12.22730 -12.02337 -11.86670 -11.39573 -11.25218 -11.08106 -10.86392 -10.80131 -10.44734 -9.92030 -9.46897 -9.10015 -9.08756 -8.67922 -7.08332 -6.37127 -4.12540 0.28865 0.80048 2.08319 2.29297 2.39717 2.65579 3.02594 3.26633 3.40835 3.43178 3.50974 4.24446 4.41777 4.48618 4.58271 4.70937 4.76491 4.95176 5.01607 5.04274 5.40751 5.51642 5.54514 5.83539 5.84851 5.90082 5.90736 6.13682 6.21241 6.59322 7.56412 7.85451 7.89425 8.34129 9.07668 10.71817 Molecular weight = 282.04amu Principal moments of inertia in cm(-1) A = 0.027793 B = 0.003673 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.197293 B = 7622.339895 C = 8156.522211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.099 3.901 3 Si 0.855 3.145 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.236 1.236 7 C -0.524 4.524 8 H 0.093 0.907 9 S -0.136 6.136 10 C -0.098 4.098 11 C 0.475 3.525 12 O -0.467 6.467 13 O -0.293 6.293 14 C 0.084 3.916 15 C -0.081 4.081 16 C -0.118 4.118 17 C -0.064 4.064 18 C -0.114 4.114 19 C 0.528 3.472 20 O -0.506 6.506 21 O -0.512 6.512 22 C -0.060 4.060 23 H 0.273 0.727 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.142 0.858 27 H 0.142 0.858 28 H 0.144 0.856 29 H 0.416 0.584 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.011 -12.401 0.145 24.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.111 4.111 3 Si 0.680 3.320 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.160 1.160 7 C -0.671 4.671 8 H 0.111 0.889 9 S 0.090 5.910 10 C -0.246 4.246 11 C 0.316 3.684 12 O -0.350 6.350 13 O -0.210 6.210 14 C 0.042 3.958 15 C -0.099 4.099 16 C -0.136 4.136 17 C -0.082 4.082 18 C -0.115 4.115 19 C 0.372 3.628 20 O -0.394 6.394 21 O -0.324 6.324 22 C -0.079 4.079 23 H 0.083 0.917 24 H 0.133 0.867 25 H 0.133 0.867 26 H 0.159 0.841 27 H 0.160 0.840 28 H 0.161 0.839 29 H 0.275 0.725 30 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 21.451 -11.104 0.018 24.155 hybrid contribution -0.524 -0.083 0.588 0.792 sum 20.927 -11.187 0.606 23.737 Atomic orbital electron populations 1.69931 1.05865 1.27942 1.47421 1.24682 0.94458 0.98932 0.93016 0.86763 0.81871 0.83353 0.80018 1.19071 1.19693 1.15968 1.22246 0.87501 0.97846 1.59546 0.88920 1.84876 1.10332 0.98216 1.97587 1.23045 0.88627 1.05087 1.07816 1.23812 0.92295 0.79775 0.72477 1.90719 1.58675 1.42804 1.42766 1.84707 1.20446 1.31997 1.83817 1.18353 0.82361 1.01719 0.93379 1.21465 0.93892 0.96985 0.97589 1.21040 0.93588 1.00895 0.98120 1.21517 1.00682 0.94399 0.91621 1.18776 0.92876 1.07340 0.92548 1.20761 0.80165 0.74030 0.87828 1.90934 1.66208 1.42167 1.40132 1.84523 1.23053 1.81135 1.43703 1.21456 0.93449 0.95318 0.97693 0.91744 0.86726 0.86662 0.84060 0.84036 0.83868 0.72523 0.83762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.90 13.97 55.49 0.78 -25.13 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 3 Si 0.86 21.22 27.74 -169.99 -4.72 16.51 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 7 C -0.52 -14.67 10.04 30.94 0.31 -14.36 16 8 H 0.09 2.70 8.03 -52.48 -0.42 2.27 16 9 S -0.14 -3.33 18.55 -107.50 -1.99 -5.32 16 10 C -0.10 -1.85 6.27 36.00 0.23 -1.62 16 11 C 0.47 8.50 7.75 36.00 0.28 8.78 16 12 O -0.47 -9.65 15.27 -18.75 -0.29 -9.94 16 13 O -0.29 -4.45 10.04 -23.66 -0.24 -4.69 16 14 C 0.08 1.14 5.27 -39.27 -0.21 0.93 16 15 C -0.08 -0.84 9.98 -39.34 -0.39 -1.24 16 16 C -0.12 -0.97 10.03 -39.67 -0.40 -1.37 16 17 C -0.06 -0.57 9.61 -39.15 -0.38 -0.94 16 18 C -0.11 -1.33 5.87 -105.00 -0.62 -1.95 16 19 C 0.53 6.11 8.27 34.61 0.29 6.39 16 20 O -0.51 -7.57 17.13 -19.24 -0.33 -7.90 16 21 O -0.51 -3.87 12.68 -40.50 -0.51 -4.38 16 22 C -0.06 -0.84 8.87 -39.01 -0.35 -1.18 16 23 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 24 H 0.11 1.97 8.14 -51.92 -0.42 1.55 16 25 H 0.12 2.01 8.14 -51.92 -0.42 1.59 16 26 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 27 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 28 H 0.14 0.91 7.61 -52.49 -0.40 0.51 16 29 H 0.42 1.31 9.11 45.56 0.42 1.73 16 30 H 0.14 2.16 7.65 -52.49 -0.40 1.76 16 LS Contribution 296.88 15.07 4.47 4.47 Total: -1.00 -34.46 296.88 -5.81 -40.27 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: -1.65 Total: -0.06 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -1.33 Total: -3.83 kcal Atomic # 7 Polarization: -25.90 SS G_CDS: 0.78 Total: -25.13 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -1.37 Total: -26.91 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.72 Total: 16.51 kcal Atomic # 16 Polarization: -3.33 SS G_CDS: -1.99 Total: -5.32 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.46 -5.81 -40.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610623641.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.265 kcal (2) G-P(sol) polarization free energy of solvation -34.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds