Wall clock time and date at job start Fri Apr 10 2020 14:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76195 * 103.00255 * 2 1 4 4 C 1.39109 * 120.00241 * 0.25271 * 3 2 1 5 5 C 1.38212 * 120.22746 * 180.28012 * 4 3 2 6 6 C 1.38012 * 120.24230 * 359.44374 * 5 4 3 7 7 N 1.48014 * 119.99500 * 180.27860 * 6 5 4 8 8 O 1.31698 * 120.00190 * 353.36570 * 7 6 5 9 9 O 1.31708 * 119.99800 * 173.36166 * 7 6 5 10 10 C 1.39687 * 120.00521 * 0.29859 * 6 5 4 11 11 C 1.47717 * 120.11176 * 180.02562 * 10 6 5 12 12 O 1.21470 * 120.00081 * 303.58244 * 11 10 6 13 13 N 1.34781 * 119.99823 * 123.58284 * 11 10 6 14 14 C 1.33328 * 119.99940 * 180.02562 * 13 11 10 15 15 H 1.08002 * 119.99906 * 359.97438 * 14 13 11 16 16 C 1.46779 * 119.99765 * 180.02562 * 14 13 11 17 17 N 1.29314 * 120.00259 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99553 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47261 * 59.99845 * 18 16 14 20 20 H 1.48506 * 109.46745 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47157 * 299.99217 * 18 16 14 22 22 C 1.38673 * 120.00787 * 180.02562 * 3 2 1 23 23 H 1.08999 * 109.46833 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47178 * 300.00321 * 1 2 3 25 25 H 1.09000 * 109.46781 * 60.00442 * 1 2 3 26 26 H 1.07998 * 119.88767 * 0.02562 * 4 3 2 27 27 H 1.07998 * 119.87637 * 179.72344 * 5 4 3 28 28 H 0.97002 * 119.99846 * 0.02562 * 13 11 10 29 29 H 0.96997 * 119.99692 * 180.02562 * 17 16 14 30 30 H 1.07997 * 120.11839 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1931 2.6656 0.0053 5 6 1.4988 4.0135 -0.0005 6 6 2.8153 4.4277 0.0000 7 7 3.1363 5.8726 -0.0001 8 8 2.1733 6.7612 -0.1323 9 8 4.3852 6.2697 0.1322 10 6 3.8447 3.4835 0.0000 11 6 5.2546 3.9242 0.0011 12 8 5.6611 4.6613 -0.8746 13 7 6.0898 3.5085 0.9737 14 6 7.3622 3.9067 0.9750 15 1 7.7237 4.5621 0.1964 16 6 8.2720 3.4535 2.0340 17 7 7.8393 2.6684 2.9660 18 14 10.0549 4.0109 2.0353 19 1 10.1104 5.4922 2.1242 20 1 10.7577 3.4187 3.2018 21 1 10.7138 3.5652 0.7813 22 6 3.5365 2.1223 -0.0005 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.1610 2.3479 0.0099 27 1 0.7045 4.7452 -0.0008 28 1 5.7652 2.9196 1.6728 29 1 8.4404 2.3692 3.6659 30 1 4.3279 1.3875 -0.0014 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126831233.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:24 Heat of formation + Delta-G solvation = 23.559916 kcal Electronic energy + Delta-G solvation = -19368.611916 eV Core-core repulsion = 16067.219928 eV Total energy + Delta-G solvation = -3301.391988 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.051 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.86523 -37.91556 -37.21445 -34.52849 -33.23029 -32.30336 -31.53426 -31.21856 -29.16749 -26.33458 -25.22211 -23.19835 -21.94803 -20.17438 -18.84271 -17.91845 -17.46296 -17.05317 -16.09634 -15.27253 -15.16701 -15.01052 -14.92573 -14.34606 -14.19610 -14.04680 -13.33741 -13.25180 -13.02774 -12.62941 -12.32978 -12.17554 -11.70293 -11.46270 -10.93937 -10.68264 -10.48308 -10.29152 -10.16213 -9.97840 -9.79019 -9.58121 -9.07401 -8.72944 -8.56886 -7.64216 -7.32372 -3.88478 -0.21835 1.08140 1.26764 1.57548 2.10279 2.21855 2.84850 2.92340 2.94790 3.30670 3.65656 3.78735 4.39911 4.58437 4.78080 4.78913 4.80374 4.85603 5.22666 5.28214 5.36975 5.59899 5.83268 5.87379 6.06004 6.17776 6.44946 6.52618 6.90014 7.40259 7.84202 7.87044 8.58214 8.89667 9.68556 9.82508 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.016005 B = 0.005734 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.990006 B = 4881.647860 C = 6329.652739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S -0.095 6.095 3 C -0.058 4.058 4 C -0.154 4.154 5 C -0.035 4.035 6 C 0.007 3.993 7 N -0.013 5.013 8 O -0.291 6.291 9 O -0.141 6.141 10 C -0.027 4.027 11 C 0.431 3.569 12 O -0.556 6.556 13 N -0.495 5.495 14 C -0.251 4.251 15 H 0.131 0.869 16 C 0.026 3.974 17 N -0.805 5.805 18 Si 0.948 3.052 19 H -0.259 1.259 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.082 4.082 23 H 0.109 0.891 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.137 0.863 27 H 0.148 0.852 28 H 0.395 0.605 29 H 0.298 0.702 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.357 -9.362 0.168 13.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 S 0.148 5.852 3 C -0.172 4.172 4 C -0.179 4.179 5 C -0.056 4.056 6 C -0.088 4.088 7 N 0.433 4.567 8 O -0.446 6.446 9 O -0.332 6.332 10 C -0.037 4.037 11 C 0.222 3.778 12 O -0.441 6.441 13 N -0.124 5.124 14 C -0.387 4.387 15 H 0.148 0.852 16 C -0.191 4.191 17 N -0.438 5.438 18 Si 0.771 3.229 19 H -0.183 1.183 20 H -0.200 1.200 21 H -0.185 1.185 22 C -0.108 4.108 23 H 0.127 0.873 24 H 0.105 0.895 25 H 0.105 0.895 26 H 0.155 0.845 27 H 0.166 0.834 28 H 0.228 0.772 29 H 0.110 0.890 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.735 -10.418 -0.276 13.598 hybrid contribution -0.358 1.364 0.555 1.515 sum -9.093 -9.054 0.278 12.835 Atomic orbital electron populations 1.23738 0.94987 1.07215 1.05967 1.85605 1.06082 1.01968 1.91530 1.21847 0.96421 0.97145 1.01814 1.20929 0.98617 0.91340 1.06993 1.20699 0.94264 0.96427 0.94214 1.20036 0.94359 0.78538 1.15831 1.49935 1.02566 1.03301 1.00852 1.96130 1.38165 1.48001 1.62265 1.96348 0.97793 1.86694 1.52345 1.19825 0.95024 0.91745 0.97108 1.17064 0.83955 0.88975 0.87764 1.90668 1.74694 1.40304 1.38433 1.41316 1.09217 1.38567 1.23280 1.21466 0.84092 1.24354 1.08757 0.85190 1.27313 1.02634 0.95230 0.93919 1.68636 1.39759 1.25052 1.10402 0.85591 0.78060 0.80302 0.78897 1.18327 1.20038 1.18463 1.20847 0.94791 0.93927 1.01194 0.87261 0.89451 0.89504 0.84502 0.83394 0.77153 0.89001 0.83596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.15 101.05 0.92 -0.14 16 2 S -0.10 -1.07 22.56 -107.50 -2.43 -3.49 16 3 C -0.06 -0.83 6.11 -39.10 -0.24 -1.06 16 4 C -0.15 -2.04 9.36 -39.27 -0.37 -2.41 16 5 C -0.03 -0.57 9.56 -39.67 -0.38 -0.95 16 6 C 0.01 0.15 6.89 -79.49 -0.55 -0.40 16 7 N -0.01 -0.32 4.98 34.18 0.17 -0.15 16 8 O -0.29 -7.08 19.16 -31.57 -0.60 -7.68 16 9 O -0.14 -3.91 15.58 -39.88 -0.62 -4.53 16 10 C -0.03 -0.57 5.63 -104.99 -0.59 -1.16 16 11 C 0.43 10.60 5.66 -12.39 -0.07 10.53 16 12 O -0.56 -15.81 14.24 -18.79 -0.27 -16.07 16 13 N -0.49 -11.72 5.16 -10.61 -0.05 -11.77 16 14 C -0.25 -6.15 9.92 -13.45 -0.13 -6.29 16 15 H 0.13 3.35 7.19 -52.49 -0.38 2.97 16 16 C 0.03 0.58 5.69 -15.16 -0.09 0.50 16 17 N -0.81 -17.82 13.09 56.00 0.73 -17.09 16 18 Si 0.95 17.29 29.65 -169.99 -5.04 12.25 16 19 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 20 H -0.28 -4.80 7.11 56.52 0.40 -4.40 16 21 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 22 C -0.08 -1.40 9.52 -38.93 -0.37 -1.77 16 23 H 0.11 0.58 8.14 -51.92 -0.42 0.15 16 24 H 0.09 0.56 7.73 -51.93 -0.40 0.16 16 25 H 0.09 0.56 7.75 -51.92 -0.40 0.15 16 26 H 0.14 1.31 5.86 -52.49 -0.31 1.00 16 27 H 0.15 2.16 7.58 -52.49 -0.40 1.77 16 28 H 0.39 8.73 7.97 -40.82 -0.33 8.41 16 29 H 0.30 5.99 8.26 -40.82 -0.34 5.65 16 30 H 0.15 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 291.79 15.07 4.40 4.40 Total: -1.00 -30.53 291.79 -7.76 -38.29 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -2.19 Total: 9.01 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.86 Total: -3.15 kcal Atomic # 7 Polarization: -29.86 SS G_CDS: 0.85 Total: -29.01 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -1.49 Total: -28.29 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.04 Total: 12.25 kcal Atomic # 16 Polarization: -1.07 SS G_CDS: -2.43 Total: -3.49 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.53 -7.76 -38.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126831233.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.851 kcal (2) G-P(sol) polarization free energy of solvation -30.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds