Wall clock time and date at job start Fri Apr 10 2020 15:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00196 * 2 1 4 4 H 1.48500 * 109.47022 * 270.00121 * 3 2 1 5 5 H 1.48506 * 109.46743 * 29.99706 * 3 2 1 6 6 H 1.48495 * 109.47252 * 149.99554 * 3 2 1 7 7 C 1.37882 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99831 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00052 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47293 * 179.97438 * 9 7 2 11 11 S 1.81408 * 109.47079 * 179.97438 * 10 9 7 12 12 C 1.81404 * 102.99631 * 185.05902 * 11 10 9 13 13 H 1.08996 * 110.26884 * 51.51702 * 12 11 10 14 14 C 1.54339 * 110.30469 * 289.33431 * 12 11 10 15 15 C 1.54345 * 102.39443 * 214.73321 * 14 12 11 16 16 C 1.51372 * 105.23137 * 26.15054 * 15 14 12 17 17 C 1.38507 * 130.37637 * 162.40230 * 16 15 14 18 18 C 1.38079 * 120.23797 * 180.28972 * 17 16 15 19 19 C 1.38374 * 119.91688 * 0.28040 * 18 17 16 20 20 Cl 1.73597 * 120.04194 * 180.02562 * 19 18 17 21 21 C 1.38211 * 119.90870 * 0.02562 * 19 18 17 22 22 C 1.38230 * 109.75309 * 343.16292 * 16 15 14 23 23 H 0.96997 * 120.00016 * 0.02562 * 1 2 3 24 24 H 1.09008 * 109.47157 * 59.99835 * 9 7 2 25 25 H 1.09002 * 109.47417 * 299.99706 * 9 7 2 26 26 H 1.08998 * 109.46715 * 60.00016 * 10 9 7 27 27 H 1.08995 * 109.47183 * 300.00031 * 10 9 7 28 28 H 1.08996 * 110.82156 * 332.95590 * 14 12 11 29 29 H 1.09000 * 110.82485 * 96.30960 * 14 12 11 30 30 H 1.08993 * 110.30352 * 145.27607 * 15 14 12 31 31 H 1.09002 * 110.29877 * 267.32859 * 15 14 12 32 32 H 1.07998 * 119.87943 * 0.57269 * 17 16 15 33 33 H 1.07993 * 120.04204 * 180.30464 * 18 17 16 34 34 H 1.08001 * 119.90098 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 16 1.3382 -5.2331 0.0013 12 6 2.6591 -6.4667 0.1571 13 1 3.3066 -6.2223 0.9991 14 6 3.4794 -6.5408 -1.1482 15 6 3.8432 -8.0387 -1.2262 16 6 2.7521 -8.7535 -0.4582 17 6 2.3777 -10.0870 -0.4627 18 6 1.3313 -10.5182 0.3284 19 6 0.6500 -9.6144 1.1244 20 17 -0.6656 -10.1530 2.1208 21 6 1.0184 -8.2822 1.1252 22 6 2.0684 -7.8493 0.3328 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5568 0.8903 26 1 2.8719 -3.6043 0.8905 27 1 2.8719 -3.6043 -0.8894 28 1 2.8732 -6.2443 -2.0041 29 1 4.3756 -5.9245 -1.0781 30 1 3.8581 -8.3707 -2.2643 31 1 4.8114 -8.2176 -0.7586 32 1 2.9091 -10.7930 -1.0837 33 1 1.0453 -11.5595 0.3262 34 1 0.4863 -7.5768 1.7462 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359051941.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:25 Heat of formation + Delta-G solvation = -17.598108 kcal Electronic energy + Delta-G solvation = -16541.370505 eV Core-core repulsion = 13782.443280 eV Total energy + Delta-G solvation = -2758.927225 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 282.054 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.14215 -37.86578 -36.26924 -35.78219 -32.92715 -32.51592 -30.00178 -28.43240 -27.26788 -23.89674 -23.28710 -21.99546 -21.94368 -18.68065 -17.87674 -17.46688 -16.68665 -16.53509 -16.16348 -15.90562 -15.54749 -14.76987 -14.54516 -14.41226 -14.29977 -13.93853 -13.61878 -13.24306 -12.99581 -12.85656 -12.71372 -12.46297 -12.35308 -12.25457 -12.16175 -11.82648 -11.75805 -11.62853 -11.22274 -10.76928 -10.61511 -9.91309 -9.44405 -8.66410 -8.23609 -6.37567 0.02439 0.18465 0.87338 1.10690 1.40901 1.42618 1.53802 1.72002 2.40110 2.57591 3.09720 3.32472 3.38742 3.91693 3.95021 4.08982 4.14749 4.26083 4.27443 4.37642 4.51444 4.58147 4.71168 4.85475 4.88463 4.97256 5.00688 5.20066 5.22133 5.24627 5.37151 5.48271 5.52496 5.72890 5.77823 6.09990 6.77007 7.32198 8.88246 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.026536 B = 0.003431 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.921141 B = 8158.616886 C = 9063.381706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.044 3.956 10 C -0.045 4.045 11 S -0.310 6.310 12 C -0.010 4.010 13 H 0.103 0.897 14 C -0.115 4.115 15 C -0.070 4.070 16 C -0.082 4.082 17 C -0.092 4.092 18 C -0.103 4.103 19 C -0.049 4.049 20 Cl -0.072 7.072 21 C -0.102 4.102 22 C -0.085 4.085 23 H 0.265 0.735 24 H -0.006 1.006 25 H -0.007 1.007 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.633 -23.080 -1.178 24.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.796 3.204 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.183 1.183 7 C -0.581 4.581 8 H 0.087 0.913 9 C 0.006 3.994 10 C -0.193 4.193 11 S -0.079 6.079 12 C -0.138 4.138 13 H 0.121 0.879 14 C -0.154 4.154 15 C -0.108 4.108 16 C -0.084 4.084 17 C -0.110 4.110 18 C -0.121 4.121 19 C -0.075 4.075 20 Cl -0.044 7.044 21 C -0.122 4.122 22 C -0.086 4.086 23 H 0.074 0.926 24 H 0.013 0.987 25 H 0.012 0.988 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.185 0.815 33 H 0.177 0.823 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.249 -23.143 -1.142 24.279 hybrid contribution 0.654 1.466 0.587 1.709 sum 7.903 -21.677 -0.556 23.079 Atomic orbital electron populations 1.70119 1.08062 1.28057 1.50999 1.26045 0.95766 1.03620 0.94346 0.85337 0.78615 0.77800 0.78628 1.19548 1.20864 1.18330 1.21549 0.93741 0.91276 1.51529 0.91291 1.18681 0.93729 0.91643 0.95387 1.23302 1.00007 0.92066 1.03946 1.87200 1.19913 1.03545 1.97239 1.22708 0.96389 0.91854 1.02845 0.87855 1.22761 0.99944 0.98036 0.94653 1.21107 0.96639 0.91746 1.01310 1.20993 0.97190 0.93774 0.96440 1.20917 0.96523 0.94522 0.99017 1.21294 0.95382 1.00323 0.95144 1.20837 0.94009 0.93973 0.98701 1.98364 1.47277 1.89984 1.68736 1.20563 0.97204 0.94514 0.99876 1.19963 0.96492 0.94020 0.98140 0.92594 0.98737 0.98818 0.90739 0.90106 0.90547 0.88625 0.87896 0.87599 0.81502 0.82262 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 2 C 0.00 0.03 5.46 84.66 0.46 0.50 16 3 Si 0.97 43.77 29.54 68.60 2.03 45.79 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.54 -30.64 9.11 25.60 0.23 -30.41 16 8 H 0.07 3.65 7.74 -2.91 -0.02 3.62 16 9 C 0.04 2.39 4.98 29.85 0.15 2.53 16 10 C -0.05 -1.90 5.84 71.98 0.42 -1.48 16 11 S -0.31 -11.73 20.83 -56.49 -1.18 -12.90 16 12 C -0.01 -0.27 3.36 30.52 0.10 -0.17 16 13 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 14 C -0.11 -2.43 6.56 31.50 0.21 -2.22 16 15 C -0.07 -1.05 6.77 30.52 0.21 -0.84 16 16 C -0.08 -1.59 6.14 -19.59 -0.12 -1.71 16 17 C -0.09 -1.41 10.04 22.30 0.22 -1.19 16 18 C -0.10 -1.78 9.83 22.26 0.22 -1.56 16 19 C -0.05 -1.12 6.32 22.30 0.14 -0.98 16 20 Cl -0.07 -1.61 28.96 -2.72 -0.08 -1.69 16 21 C -0.10 -2.75 9.53 22.32 0.21 -2.54 16 22 C -0.08 -2.17 5.61 -19.59 -0.11 -2.28 16 23 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 24 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 25 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 26 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 27 H 0.08 3.15 8.14 -2.39 -0.02 3.13 16 28 H 0.08 1.84 7.88 -2.39 -0.02 1.82 16 29 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 33 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 34 H 0.12 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -67.19 316.72 4.49 -62.70 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: 1.08 Total: 5.59 kcal Atomic # 6 Polarization: -44.69 SS G_CDS: 2.35 Total: -42.34 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.28 Total: -57.15 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -11.73 SS G_CDS: -1.18 Total: -12.90 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.69 kcal Total: -67.19 4.49 -62.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359051941.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.104 kcal (2) G-P(sol) polarization free energy of solvation -67.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds