Wall clock time and date at job start Fri Apr 10 2020 15:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31430 * 1 3 3 Si 1.86799 * 120.00225 * 2 1 4 4 H 1.48495 * 109.47154 * 270.00501 * 3 2 1 5 5 H 1.48504 * 109.46637 * 30.00210 * 3 2 1 6 6 H 1.48491 * 109.46880 * 149.99920 * 3 2 1 7 7 C 1.38804 * 119.99520 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00540 * 359.97438 * 7 2 1 9 9 O 1.34857 * 119.99427 * 179.97438 * 7 2 1 10 10 C 1.34773 * 116.99858 * 180.02562 * 9 7 2 11 11 O 1.21547 * 119.99938 * 359.97438 * 10 9 7 12 12 C 1.47407 * 119.99920 * 179.97438 * 10 9 7 13 13 C 1.40258 * 119.94922 * 0.02611 * 12 10 9 14 14 C 1.36147 * 120.50902 * 179.97438 * 13 12 10 15 15 C 1.40042 * 120.09491 * 359.96187 * 14 13 12 16 16 N 1.35535 * 133.38965 * 179.71636 * 15 14 13 17 17 C 1.30234 * 109.70890 * 179.97438 * 16 15 14 18 18 C 1.50707 * 124.92354 * 180.10206 * 17 16 15 19 19 F 1.39899 * 109.46881 * 120.29656 * 18 17 16 20 20 F 1.39897 * 109.47274 * 240.29920 * 18 17 16 21 21 N 1.35852 * 110.15569 * 0.36429 * 17 16 15 22 22 H 0.96991 * 126.37296 * 179.77735 * 21 17 16 23 23 C 1.38198 * 107.26253 * 359.77450 * 21 17 16 24 24 C 1.38378 * 134.01609 * 179.97438 * 23 21 17 25 25 H 0.96995 * 119.99374 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.74286 * 359.97438 * 13 12 10 27 27 H 1.08006 * 119.95220 * 180.02562 * 14 13 12 28 28 H 1.08998 * 109.46660 * 0.29642 * 18 17 16 29 29 H 1.07998 * 120.22069 * 0.05686 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4958 2.0464 -1.4000 5 1 1.4458 2.6526 0.7001 6 1 3.5458 1.4400 0.7000 7 6 2.0082 -1.2021 -0.0005 8 1 1.4682 -2.1374 -0.0005 9 8 3.3568 -1.2021 -0.0011 10 6 3.9686 -2.4030 -0.0021 11 8 3.3066 -3.4223 -0.0021 12 6 5.4407 -2.4801 -0.0033 13 6 6.2035 -1.3031 -0.0028 14 6 7.5638 -1.3611 -0.0034 15 6 8.2138 -2.6015 -0.0036 16 7 9.5183 -2.9691 -0.0091 17 6 9.6086 -4.2683 -0.0060 18 6 10.9011 -5.0433 -0.0080 19 9 10.9624 -5.8508 1.1327 20 9 10.9614 -5.8466 -1.1518 21 7 8.3688 -4.8237 -0.0065 22 1 8.1631 -5.7715 -0.0077 23 6 7.4550 -3.7869 -0.0049 24 6 6.0727 -3.7236 -0.0050 25 1 -0.4849 0.8401 0.0004 26 1 5.7081 -0.3435 -0.0019 27 1 8.1424 -0.4491 -0.0025 28 1 11.7411 -4.3488 -0.0072 29 1 5.4869 -4.6309 -0.0057 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733535390.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:37 Heat of formation + Delta-G solvation = -103.475729 kcal Electronic energy + Delta-G solvation = -20642.301280 eV Core-core repulsion = 16781.560227 eV Total energy + Delta-G solvation = -3860.741053 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.060 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.62726 -47.62958 -42.39469 -39.39945 -37.18330 -35.38116 -33.49833 -32.45758 -30.83974 -30.15249 -27.67239 -25.55758 -23.17649 -22.65723 -21.55690 -20.36043 -18.64721 -18.24374 -18.12393 -17.90593 -17.38366 -16.74192 -15.92545 -15.49083 -15.15117 -14.76817 -14.67536 -14.46432 -13.97696 -13.97438 -13.95049 -13.44747 -12.88396 -12.48911 -12.21843 -12.07588 -11.97423 -11.61726 -11.31732 -11.01915 -10.58943 -10.47923 -10.36348 -9.81995 -9.36871 -8.80060 -8.63649 -8.31377 -6.50583 -4.20809 0.43349 1.37246 2.14295 2.24228 2.83558 3.10885 3.18394 3.28190 3.32514 3.53625 3.93727 4.05968 4.14240 4.15010 4.37725 4.37933 4.82954 5.02857 5.09529 5.21741 5.24150 5.45073 5.87235 5.97859 6.21960 6.42826 6.57304 6.68039 6.88468 7.38221 7.59527 7.90899 8.50145 8.86344 9.54023 10.56703 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.042352 B = 0.003570 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.969155 B = 7840.600870 C = 8327.076026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.257 1.257 7 C -0.372 4.372 8 H 0.112 0.888 9 O -0.237 6.237 10 C 0.442 3.558 11 O -0.536 6.536 12 C -0.054 4.054 13 C -0.084 4.084 14 C -0.068 4.068 15 C 0.055 3.945 16 N -0.452 5.452 17 C 0.198 3.802 18 C 0.360 3.640 19 F -0.188 7.188 20 F -0.188 7.188 21 N -0.574 5.574 22 H 0.429 0.571 23 C 0.056 3.944 24 C -0.062 4.062 25 H 0.282 0.718 26 H 0.148 0.852 27 H 0.138 0.862 28 H 0.154 0.846 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.416 -6.027 0.008 22.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.181 1.181 7 C -0.447 4.447 8 H 0.130 0.870 9 O -0.145 6.145 10 C 0.290 3.710 11 O -0.433 6.433 12 C -0.057 4.057 13 C -0.104 4.104 14 C -0.087 4.087 15 C -0.065 4.065 16 N -0.174 5.174 17 C -0.070 4.070 18 C 0.304 3.696 19 F -0.169 7.169 20 F -0.169 7.169 21 N -0.186 5.186 22 H 0.268 0.732 23 C -0.054 4.054 24 C -0.083 4.083 25 H 0.093 0.907 26 H 0.166 0.834 27 H 0.156 0.844 28 H 0.171 0.829 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 21.705 -5.559 0.006 22.406 hybrid contribution -0.681 -0.547 -0.010 0.874 sum 21.024 -6.107 -0.004 21.893 Atomic orbital electron populations 1.69595 1.05824 1.28809 1.45880 1.24612 0.95073 0.98924 0.95388 0.86206 0.80449 0.81164 0.79162 1.19583 1.20564 1.18052 1.20746 0.76002 0.97166 1.50787 0.87002 1.83525 1.24038 1.30879 1.76026 1.20201 0.87357 0.82833 0.80609 1.90691 1.66331 1.35934 1.50360 1.19089 0.91350 0.92879 1.02375 1.21084 0.92774 0.98971 0.97603 1.19945 0.93532 0.94892 1.00379 1.19078 0.87983 0.93659 1.05735 1.70138 1.19899 1.08454 1.18900 1.23594 0.87137 0.90714 1.05569 1.19662 0.93948 0.84349 0.71635 1.93075 1.97210 1.75707 1.50940 1.93075 1.97214 1.75937 1.50709 1.42686 1.04996 1.09518 1.61414 0.73185 1.18661 0.91967 0.87940 1.06826 1.19945 0.89295 0.98598 1.00500 0.90715 0.83413 0.84405 0.82899 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.69 13.96 55.49 0.77 -23.92 15 2 C 0.07 1.80 5.50 -17.51 -0.10 1.71 15 3 Si 0.91 20.41 28.62 -169.99 -4.86 15.55 15 4 H -0.27 -5.95 7.11 56.52 0.40 -5.54 15 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 6 H -0.26 -5.55 7.11 56.52 0.40 -5.15 15 7 C -0.37 -10.71 10.11 30.94 0.31 -10.39 15 8 H 0.11 3.55 7.09 -52.49 -0.37 3.18 15 9 O -0.24 -6.05 7.79 -21.76 -0.17 -6.22 15 10 C 0.44 10.39 7.82 34.46 0.27 10.66 15 11 O -0.54 -14.06 15.57 -19.30 -0.30 -14.37 15 12 C -0.05 -0.99 5.88 -104.94 -0.62 -1.60 15 13 C -0.08 -1.33 9.53 -39.57 -0.38 -1.71 15 14 C -0.07 -0.95 10.03 -39.66 -0.40 -1.34 15 15 C 0.05 0.80 7.23 -84.61 -0.61 0.19 15 16 N -0.45 -6.02 11.26 -8.17 -0.09 -6.11 15 17 C 0.20 2.17 7.51 -154.89 -1.16 1.01 15 18 C 0.36 2.68 5.86 36.01 0.21 2.89 15 19 F -0.19 -1.57 17.32 2.25 0.04 -1.53 15 20 F -0.19 -1.57 17.32 2.25 0.04 -1.53 15 21 N -0.57 -6.41 6.23 -8.03 -0.05 -6.46 15 22 H 0.43 3.52 8.96 -40.82 -0.37 3.15 15 23 C 0.06 0.79 7.29 -84.00 -0.61 0.18 15 24 C -0.06 -0.99 9.61 -39.07 -0.38 -1.37 15 25 H 0.28 7.35 8.31 -40.82 -0.34 7.01 15 26 H 0.15 2.30 7.58 -52.49 -0.40 1.90 15 27 H 0.14 1.57 8.06 -52.48 -0.42 1.14 15 28 H 0.15 0.67 8.14 -51.93 -0.42 0.24 15 29 H 0.14 2.18 7.63 -52.49 -0.40 1.78 15 LS Contribution 281.54 15.07 4.24 4.24 Total: -1.00 -32.76 281.54 -5.36 -38.11 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -1.52 Total: 2.00 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -3.46 Total: 0.22 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.63 Total: -36.49 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.47 Total: -20.58 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.08 Total: -3.05 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.86 Total: 15.55 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.76 -5.36 -38.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733535390.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.363 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds