Wall clock time and date at job start Fri Apr 10 2020 15:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31430 * 1 3 3 Si 1.86799 * 120.00225 * 2 1 4 4 H 1.48495 * 109.47154 * 270.00501 * 3 2 1 5 5 H 1.48504 * 109.46637 * 30.00210 * 3 2 1 6 6 H 1.48491 * 109.46880 * 149.99920 * 3 2 1 7 7 C 1.38804 * 119.99520 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00540 * 359.97438 * 7 2 1 9 9 O 1.34857 * 119.99427 * 179.97438 * 7 2 1 10 10 C 1.34773 * 116.99858 * 180.02562 * 9 7 2 11 11 O 1.21547 * 119.99938 * 359.97438 * 10 9 7 12 12 C 1.47407 * 119.99920 * 179.97438 * 10 9 7 13 13 C 1.40258 * 119.94922 * 0.02611 * 12 10 9 14 14 C 1.36147 * 120.50902 * 179.97438 * 13 12 10 15 15 C 1.40042 * 120.09491 * 359.96187 * 14 13 12 16 16 N 1.35535 * 133.38965 * 179.71636 * 15 14 13 17 17 C 1.30234 * 109.70890 * 179.97438 * 16 15 14 18 18 C 1.50707 * 124.92354 * 180.10206 * 17 16 15 19 19 F 1.39899 * 109.46881 * 120.29656 * 18 17 16 20 20 F 1.39897 * 109.47274 * 240.29920 * 18 17 16 21 21 N 1.35852 * 110.15569 * 0.36429 * 17 16 15 22 22 H 0.96991 * 126.37296 * 179.77735 * 21 17 16 23 23 C 1.38198 * 107.26253 * 359.77450 * 21 17 16 24 24 C 1.38378 * 134.01609 * 179.97438 * 23 21 17 25 25 H 0.96995 * 119.99374 * 359.97438 * 1 2 3 26 26 H 1.08002 * 119.74286 * 359.97438 * 13 12 10 27 27 H 1.08006 * 119.95220 * 180.02562 * 14 13 12 28 28 H 1.08998 * 109.46660 * 0.29642 * 18 17 16 29 29 H 1.07998 * 120.22069 * 0.05686 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4958 2.0464 -1.4000 5 1 1.4458 2.6526 0.7001 6 1 3.5458 1.4400 0.7000 7 6 2.0082 -1.2021 -0.0005 8 1 1.4682 -2.1374 -0.0005 9 8 3.3568 -1.2021 -0.0011 10 6 3.9686 -2.4030 -0.0021 11 8 3.3066 -3.4223 -0.0021 12 6 5.4407 -2.4801 -0.0033 13 6 6.2035 -1.3031 -0.0028 14 6 7.5638 -1.3611 -0.0034 15 6 8.2138 -2.6015 -0.0036 16 7 9.5183 -2.9691 -0.0091 17 6 9.6086 -4.2683 -0.0060 18 6 10.9011 -5.0433 -0.0080 19 9 10.9624 -5.8508 1.1327 20 9 10.9614 -5.8466 -1.1518 21 7 8.3688 -4.8237 -0.0065 22 1 8.1631 -5.7715 -0.0077 23 6 7.4550 -3.7869 -0.0049 24 6 6.0727 -3.7236 -0.0050 25 1 -0.4849 0.8401 0.0004 26 1 5.7081 -0.3435 -0.0019 27 1 8.1424 -0.4491 -0.0025 28 1 11.7411 -4.3488 -0.0072 29 1 5.4869 -4.6309 -0.0057 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733535390.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:36 Heat of formation + Delta-G solvation = -125.150011 kcal Electronic energy + Delta-G solvation = -20643.241147 eV Core-core repulsion = 16781.560227 eV Total energy + Delta-G solvation = -3861.680921 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.060 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.26195 -48.26523 -43.46370 -41.27317 -38.53266 -37.32988 -34.57134 -34.54324 -31.93945 -31.35107 -28.85481 -27.32448 -24.58164 -23.79112 -22.51114 -21.93048 -20.21284 -19.83733 -19.21154 -18.55530 -18.47692 -17.68366 -17.57015 -16.85248 -16.61052 -16.36694 -16.19840 -15.54080 -15.12066 -15.10477 -14.67175 -14.60617 -14.31853 -14.10053 -13.79368 -13.53392 -12.90312 -12.87235 -12.69457 -12.42244 -12.30050 -12.09958 -11.85088 -11.48039 -11.30469 -10.85310 -9.82075 -9.48775 -8.57667 -6.42736 -0.77484 0.17873 0.98353 1.29855 1.37577 1.41077 1.57454 1.76653 1.96307 2.26446 2.33640 2.62639 2.95002 2.96970 3.20256 3.66462 3.73332 3.74535 3.92716 3.96579 4.05238 4.16081 4.52342 4.83378 4.99579 5.13238 5.25046 5.42984 5.50620 5.85146 5.97674 6.33928 6.44152 6.76580 7.49184 8.54457 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.042352 B = 0.003570 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.969155 B = 7840.600870 C = 8327.076026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.017 3.983 3 Si 0.981 3.019 4 H -0.257 1.257 5 H -0.266 1.266 6 H -0.241 1.241 7 C -0.406 4.406 8 H 0.059 0.941 9 O -0.239 6.239 10 C 0.451 3.549 11 O -0.573 6.573 12 C -0.087 4.087 13 C -0.082 4.082 14 C -0.056 4.056 15 C 0.056 3.944 16 N -0.468 5.468 17 C 0.217 3.783 18 C 0.367 3.633 19 F -0.190 7.190 20 F -0.191 7.191 21 N -0.566 5.566 22 H 0.442 0.558 23 C 0.044 3.956 24 C -0.047 4.047 25 H 0.291 0.709 26 H 0.151 0.849 27 H 0.171 0.829 28 H 0.194 0.806 29 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.696 -5.138 0.019 26.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.184 4.184 3 Si 0.799 3.201 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.164 1.164 7 C -0.482 4.482 8 H 0.077 0.923 9 O -0.148 6.148 10 C 0.300 3.700 11 O -0.470 6.470 12 C -0.090 4.090 13 C -0.103 4.103 14 C -0.075 4.075 15 C -0.064 4.064 16 N -0.189 5.189 17 C -0.052 4.052 18 C 0.312 3.688 19 F -0.172 7.172 20 F -0.172 7.172 21 N -0.178 5.178 22 H 0.285 0.715 23 C -0.067 4.067 24 C -0.068 4.068 25 H 0.101 0.899 26 H 0.169 0.831 27 H 0.188 0.812 28 H 0.211 0.789 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 25.988 -4.728 0.017 26.415 hybrid contribution -1.747 -1.147 -0.017 2.090 sum 24.241 -5.875 0.000 24.943 Atomic orbital electron populations 1.69691 1.07698 1.30497 1.47048 1.25637 0.96009 1.02886 0.93866 0.85114 0.79482 0.75357 0.80105 1.18171 1.19061 1.16358 1.20367 0.77428 0.95989 1.54414 0.92316 1.83526 1.22160 1.31594 1.77510 1.21300 0.89509 0.81778 0.77388 1.90659 1.67952 1.37043 1.51379 1.18800 0.87971 0.95094 1.07151 1.21061 0.93509 0.97977 0.97771 1.20165 0.92637 0.96038 0.98664 1.19429 0.88780 0.93932 1.04276 1.70203 1.18831 1.09455 1.20419 1.24476 0.88074 0.90596 1.02009 1.20069 0.93012 0.84527 0.71223 1.93080 1.97061 1.75840 1.51182 1.93080 1.97066 1.76069 1.50954 1.42779 1.04680 1.09955 1.60428 0.71529 1.18527 0.91402 0.89179 1.07579 1.19879 0.90319 0.97684 0.98906 0.89861 0.83084 0.81200 0.78897 0.84338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.27 13.96 21.63 0.30 -53.97 15 2 C 0.02 0.96 5.50 84.89 0.47 1.43 15 3 Si 0.98 41.99 28.62 68.60 1.96 43.95 15 4 H -0.26 -10.41 7.11 99.48 0.71 -9.71 15 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 15 6 H -0.24 -9.58 7.11 99.48 0.71 -8.87 15 7 C -0.41 -24.82 10.11 67.96 0.69 -24.14 15 8 H 0.06 4.09 7.09 -2.91 -0.02 4.07 15 9 O -0.24 -12.68 7.79 10.89 0.08 -12.60 15 10 C 0.45 22.11 7.82 70.24 0.55 22.66 15 11 O -0.57 -31.91 15.57 19.68 0.31 -31.60 15 12 C -0.09 -3.21 5.88 -20.07 -0.12 -3.33 15 13 C -0.08 -2.49 9.53 22.27 0.21 -2.28 15 14 C -0.06 -1.38 10.03 22.22 0.22 -1.16 15 15 C 0.06 1.46 7.23 39.62 0.29 1.74 15 16 N -0.47 -10.59 11.26 -179.76 -2.02 -12.62 15 17 C 0.22 3.93 7.51 137.95 1.04 4.97 15 18 C 0.37 3.87 5.86 71.24 0.42 4.28 15 19 F -0.19 -2.44 17.32 44.97 0.78 -1.66 15 20 F -0.19 -2.44 17.32 44.97 0.78 -1.66 15 21 N -0.57 -10.97 6.23 -179.32 -1.12 -12.09 15 22 H 0.44 6.04 8.96 -92.71 -0.83 5.21 15 23 C 0.04 1.14 7.29 38.79 0.28 1.43 15 24 C -0.05 -1.48 9.61 22.60 0.22 -1.26 15 25 H 0.29 15.58 8.31 -92.71 -0.77 14.81 15 26 H 0.15 4.44 7.58 -2.91 -0.02 4.42 15 27 H 0.17 3.11 8.06 -2.91 -0.02 3.08 15 28 H 0.19 0.64 8.14 -2.39 -0.02 0.62 15 29 H 0.14 4.34 7.63 -2.91 -0.02 4.31 15 Total: -1.00 -75.65 281.54 5.74 -69.91 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 0.41 Total: 7.98 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 4.26 Total: 4.35 kcal Atomic # 7 Polarization: -75.83 SS G_CDS: -2.84 Total: -78.67 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: 0.39 Total: -44.20 kcal Atomic # 9 Polarization: -4.87 SS G_CDS: 1.56 Total: -3.32 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.96 Total: 43.95 kcal Total: -75.65 5.74 -69.91 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733535390.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.245 kcal (2) G-P(sol) polarization free energy of solvation -75.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds