Wall clock time and date at job start Fri Apr 10 2020 15:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 120.00048 * 2 1 4 4 H 1.48500 * 109.46684 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46858 * 120.00172 * 3 2 1 6 6 H 1.48495 * 109.46944 * 240.00399 * 3 2 1 7 7 C 1.37878 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99853 * 16.98739 * 7 2 1 9 9 C 1.50700 * 120.00145 * 196.99475 * 7 2 1 10 10 H 1.09000 * 109.47172 * 305.55403 * 9 7 2 11 11 C 1.53008 * 109.47108 * 65.55253 * 9 7 2 12 12 Cl 1.80300 * 109.46865 * 186.14947 * 11 9 7 13 13 O 1.42902 * 109.47228 * 185.54956 * 9 7 2 14 14 C 1.42894 * 113.99808 * 149.99721 * 13 9 7 15 15 C 1.50698 * 109.47239 * 180.02562 * 14 13 9 16 16 C 1.40064 * 119.02999 * 89.99773 * 15 14 13 17 17 C 1.35604 * 121.94889 * 180.02562 * 16 15 14 18 18 C 1.40842 * 119.38714 * 359.97438 * 17 16 15 19 19 N 1.31014 * 138.57028 * 179.97438 * 18 17 16 20 20 O 1.21465 * 109.09068 * 180.02562 * 19 18 17 21 21 N 1.21471 * 116.28844 * 359.97438 * 20 19 18 22 22 C 1.31012 * 109.08773 * 0.02562 * 21 20 19 23 23 C 1.35600 * 119.02799 * 269.73203 * 15 14 13 24 24 H 0.96995 * 120.00080 * 174.95476 * 1 2 3 25 25 H 1.08998 * 109.46796 * 306.14829 * 11 9 7 26 26 H 1.09002 * 109.47099 * 66.14773 * 11 9 7 27 27 H 1.09003 * 109.47417 * 300.00466 * 14 13 9 28 28 H 1.08998 * 109.47271 * 60.00190 * 14 13 9 29 29 H 1.08003 * 119.02893 * 359.97438 * 16 15 14 30 30 H 1.07993 * 120.30863 * 180.02562 * 17 16 15 31 31 H 1.08002 * 120.30231 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 1.5000 -2.1088 -0.2742 9 6 3.4622 -1.2227 0.3809 10 1 4.0140 -0.5161 -0.2390 11 6 3.6119 -0.8344 1.8533 12 17 5.3621 -0.6926 2.2625 13 8 3.9813 -2.5389 0.1803 14 6 5.3703 -2.5711 -0.1537 15 6 5.8086 -4.0006 -0.3422 16 6 5.7219 -4.5757 -1.6164 17 6 6.0993 -5.8566 -1.8527 18 6 6.5946 -6.6382 -0.7910 19 7 7.0449 -7.8523 -0.5919 20 8 7.3440 -7.9781 0.5786 21 7 7.1737 -7.0047 1.2850 22 6 6.6873 -6.0285 0.5592 23 6 6.2804 -4.6904 0.7257 24 1 -0.4850 -0.8367 -0.0739 25 1 3.1191 0.1219 2.0287 26 1 3.1531 -1.5998 2.4793 27 1 5.5350 -2.0162 -1.0773 28 1 5.9482 -2.1167 0.6511 29 1 5.3425 -3.9817 -2.4347 30 1 6.0215 -6.2732 -2.8460 31 1 6.3395 -4.2194 1.6958 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209874634.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:33 Heat of formation + Delta-G solvation = 79.035448 kcal Electronic energy + Delta-G solvation = -19203.047107 eV Core-core repulsion = 15902.017012 eV Total energy + Delta-G solvation = -3301.030094 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.67287 -39.22058 -37.37808 -35.20589 -34.84204 -33.81419 -33.00347 -31.53365 -30.00919 -27.33284 -25.22807 -24.84151 -23.21084 -21.37407 -20.90496 -18.96434 -18.85186 -18.05510 -17.82492 -16.19439 -15.78053 -15.28690 -14.49089 -14.38002 -14.19635 -13.64671 -13.27503 -13.04458 -12.81990 -12.73531 -12.43947 -11.91079 -11.89159 -11.82059 -11.54214 -11.18057 -10.96040 -10.74832 -10.34600 -10.10455 -9.76143 -9.65129 -9.39651 -8.65624 -8.59798 -8.47752 -6.82594 -4.45932 -0.07241 1.03500 1.87220 2.92485 3.04112 3.14737 3.18725 3.22611 3.37129 3.39130 3.71196 4.17324 4.35444 4.58288 4.75636 4.87626 4.97501 5.18156 5.20230 5.51691 5.56036 5.75650 5.81775 5.88202 5.94571 5.98776 6.10702 6.35180 6.36769 6.70699 7.43631 7.89874 8.11865 8.39272 8.68070 9.23951 10.58634 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.027030 B = 0.004415 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.646013 B = 6340.122044 C = 6882.606718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.037 3.963 3 Si 1.033 2.967 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.275 1.275 7 C -0.602 4.602 8 H 0.073 0.927 9 C 0.196 3.804 10 H 0.026 0.974 11 C -0.049 4.049 12 Cl -0.239 7.239 13 O -0.365 6.365 14 C 0.077 3.923 15 C -0.038 4.038 16 C -0.056 4.056 17 C -0.082 4.082 18 C 0.021 3.979 19 N -0.354 5.354 20 O 0.371 5.629 21 N -0.349 5.349 22 C 0.021 3.979 23 C -0.054 4.054 24 H 0.274 0.726 25 H 0.099 0.901 26 H 0.091 0.909 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.148 0.852 30 H 0.146 0.854 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.684 -6.326 -1.407 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.171 4.171 3 Si 0.859 3.141 4 H -0.201 1.201 5 H -0.197 1.197 6 H -0.201 1.201 7 C -0.640 4.640 8 H 0.091 0.909 9 C 0.138 3.862 10 H 0.044 0.956 11 C -0.111 4.111 12 Cl -0.213 7.213 13 O -0.285 6.285 14 C 0.000 4.000 15 C -0.042 4.042 16 C -0.078 4.078 17 C -0.102 4.102 18 C -0.132 4.132 19 N -0.077 5.077 20 O 0.134 5.866 21 N -0.071 5.071 22 C -0.131 4.131 23 C -0.075 4.075 24 H 0.085 0.915 25 H 0.117 0.883 26 H 0.110 0.890 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.165 0.835 30 H 0.164 0.836 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 12.884 -5.840 -0.861 14.172 hybrid contribution -0.056 -0.750 -0.295 0.807 sum 12.828 -6.590 -1.156 14.467 Atomic orbital electron populations 1.70846 1.06630 1.31480 1.42667 1.25790 0.96194 1.02153 0.92991 0.84195 0.75837 0.76084 0.77935 1.20115 1.19650 1.20106 1.21918 0.92958 0.97221 1.51887 0.90933 1.20334 0.96091 0.81102 0.88684 0.95645 1.26566 0.77317 1.04846 1.02398 1.98624 1.28926 1.98622 1.95176 1.88007 1.20141 1.30064 1.90248 1.21762 0.86642 0.90408 1.01197 1.19664 0.95381 0.96777 0.92401 1.21037 0.95111 0.94280 0.97391 1.19887 1.00549 0.92831 0.96932 1.22927 1.02896 0.90146 0.97188 1.75181 1.16447 1.17939 0.98155 1.85342 1.56697 1.32439 1.12095 1.75208 1.17394 0.95869 1.18610 1.22870 1.02507 0.97737 0.89979 1.19853 0.98758 0.88418 1.00429 0.91486 0.88309 0.89039 0.92425 0.90483 0.83454 0.83620 0.83467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.91 13.70 55.43 0.76 -24.15 16 2 C 0.04 0.96 5.30 -17.82 -0.09 0.86 16 3 Si 1.03 22.32 26.28 -169.99 -4.47 17.86 16 4 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.27 -5.33 5.72 56.52 0.32 -5.00 16 6 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.60 -15.60 9.15 -34.44 -0.32 -15.92 16 8 H 0.07 2.08 8.06 -52.49 -0.42 1.66 16 9 C 0.20 4.26 1.95 -27.88 -0.05 4.21 16 10 H 0.03 0.55 6.45 -51.93 -0.34 0.21 16 11 C -0.05 -0.97 6.00 37.16 0.22 -0.75 16 12 Cl -0.24 -4.13 26.15 -51.86 -1.36 -5.49 16 13 O -0.37 -7.47 9.94 -35.23 -0.35 -7.82 16 14 C 0.08 1.22 5.62 36.00 0.20 1.42 16 15 C -0.04 -0.53 5.48 -104.88 -0.57 -1.11 16 16 C -0.06 -0.68 9.51 -39.84 -0.38 -1.06 16 17 C -0.08 -0.94 10.08 -39.54 -0.40 -1.34 16 18 C 0.02 0.28 7.76 -83.03 -0.64 -0.36 16 19 N -0.35 -4.84 12.29 31.88 0.39 -4.44 16 20 O 0.37 4.94 11.67 26.94 0.31 5.25 16 21 N -0.35 -4.99 12.29 31.88 0.39 -4.60 16 22 C 0.02 0.30 7.76 -83.03 -0.64 -0.34 16 23 C -0.05 -0.76 9.65 -39.54 -0.38 -1.14 16 24 H 0.27 7.74 8.73 -40.82 -0.36 7.38 16 25 H 0.10 2.02 4.82 -51.93 -0.25 1.77 16 26 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 27 H 0.06 0.84 8.01 -51.93 -0.42 0.42 16 28 H 0.08 1.19 5.05 -51.93 -0.26 0.93 16 29 H 0.15 1.49 8.06 -52.48 -0.42 1.07 16 30 H 0.15 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.15 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 283.94 15.07 4.28 4.28 Total: -1.00 -27.59 283.94 -5.71 -33.30 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -2.61 Total: 1.35 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -3.06 Total: -15.53 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 1.54 Total: -33.20 kcal Atomic # 8 Polarization: -2.53 SS G_CDS: -0.04 Total: -2.56 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.47 Total: 17.86 kcal Atomic # 17 Polarization: -4.13 SS G_CDS: -1.36 Total: -5.49 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.59 -5.71 -33.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209874634.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.330 kcal (2) G-P(sol) polarization free energy of solvation -27.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds