Wall clock time and date at job start Fri Apr 10 2020 15:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 120.00048 * 2 1 4 4 H 1.48500 * 109.46684 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46858 * 120.00172 * 3 2 1 6 6 H 1.48495 * 109.46944 * 240.00399 * 3 2 1 7 7 C 1.37878 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99853 * 16.98739 * 7 2 1 9 9 C 1.50700 * 120.00145 * 196.99475 * 7 2 1 10 10 H 1.09000 * 109.47172 * 305.55403 * 9 7 2 11 11 C 1.53008 * 109.47108 * 65.55253 * 9 7 2 12 12 Cl 1.80300 * 109.46865 * 186.14947 * 11 9 7 13 13 O 1.42902 * 109.47228 * 185.54956 * 9 7 2 14 14 C 1.42894 * 113.99808 * 149.99721 * 13 9 7 15 15 C 1.50698 * 109.47239 * 180.02562 * 14 13 9 16 16 C 1.40064 * 119.02999 * 89.99773 * 15 14 13 17 17 C 1.35604 * 121.94889 * 180.02562 * 16 15 14 18 18 C 1.40842 * 119.38714 * 359.97438 * 17 16 15 19 19 N 1.31014 * 138.57028 * 179.97438 * 18 17 16 20 20 O 1.21465 * 109.09068 * 180.02562 * 19 18 17 21 21 N 1.21471 * 116.28844 * 359.97438 * 20 19 18 22 22 C 1.31012 * 109.08773 * 0.02562 * 21 20 19 23 23 C 1.35600 * 119.02799 * 269.73203 * 15 14 13 24 24 H 0.96995 * 120.00080 * 174.95476 * 1 2 3 25 25 H 1.08998 * 109.46796 * 306.14829 * 11 9 7 26 26 H 1.09002 * 109.47099 * 66.14773 * 11 9 7 27 27 H 1.09003 * 109.47417 * 300.00466 * 14 13 9 28 28 H 1.08998 * 109.47271 * 60.00190 * 14 13 9 29 29 H 1.08003 * 119.02893 * 359.97438 * 16 15 14 30 30 H 1.07993 * 120.30863 * 180.02562 * 17 16 15 31 31 H 1.08002 * 120.30231 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 1.5000 -2.1088 -0.2742 9 6 3.4622 -1.2227 0.3809 10 1 4.0140 -0.5161 -0.2390 11 6 3.6119 -0.8344 1.8533 12 17 5.3621 -0.6926 2.2625 13 8 3.9813 -2.5389 0.1803 14 6 5.3703 -2.5711 -0.1537 15 6 5.8086 -4.0006 -0.3422 16 6 5.7219 -4.5757 -1.6164 17 6 6.0993 -5.8566 -1.8527 18 6 6.5946 -6.6382 -0.7910 19 7 7.0449 -7.8523 -0.5919 20 8 7.3440 -7.9781 0.5786 21 7 7.1737 -7.0047 1.2850 22 6 6.6873 -6.0285 0.5592 23 6 6.2804 -4.6904 0.7257 24 1 -0.4850 -0.8367 -0.0739 25 1 3.1191 0.1219 2.0287 26 1 3.1531 -1.5998 2.4793 27 1 5.5350 -2.0162 -1.0773 28 1 5.9482 -2.1167 0.6511 29 1 5.3425 -3.9817 -2.4347 30 1 6.0215 -6.2732 -2.8460 31 1 6.3395 -4.2194 1.6958 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209874634.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:33 Heat of formation + Delta-G solvation = 62.418022 kcal Electronic energy + Delta-G solvation = -19203.767692 eV Core-core repulsion = 15902.017012 eV Total energy + Delta-G solvation = -3301.750680 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.056 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.74442 -40.33798 -38.85560 -36.69664 -35.92642 -35.39592 -34.45415 -32.64103 -31.64169 -28.55118 -26.73906 -26.22792 -24.37842 -22.65055 -22.41235 -20.08409 -20.04522 -19.61034 -19.10815 -17.76743 -16.98416 -16.57725 -15.81746 -15.59251 -15.47221 -15.20527 -14.74946 -14.50338 -14.24214 -13.91278 -13.84999 -13.32429 -13.09160 -12.97177 -12.80752 -12.62948 -12.36915 -12.24661 -11.83284 -11.72550 -11.30400 -11.13233 -10.83596 -10.53156 -10.08070 -9.65583 -8.89776 -6.55064 -1.10711 -0.03064 0.82335 1.33714 1.47590 1.52483 1.69186 1.97820 2.13476 2.34342 2.40261 2.67282 2.93063 3.10536 3.48776 3.72834 3.80838 4.08278 4.15823 4.16943 4.30103 4.41756 4.45308 4.59608 4.64737 4.78811 4.97253 5.06308 5.29701 5.37640 5.57419 5.90588 6.23916 6.68701 7.25872 7.32768 8.50091 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.027030 B = 0.004415 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.646013 B = 6340.122044 C = 6882.606718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 1.067 2.933 4 H -0.282 1.282 5 H -0.237 1.237 6 H -0.252 1.252 7 C -0.609 4.609 8 H 0.027 0.973 9 C 0.200 3.800 10 H 0.039 0.961 11 C -0.046 4.046 12 Cl -0.208 7.208 13 O -0.388 6.388 14 C 0.073 3.927 15 C -0.042 4.042 16 C -0.061 4.061 17 C -0.072 4.072 18 C 0.013 3.987 19 N -0.358 5.358 20 O 0.379 5.621 21 N -0.358 5.358 22 C 0.006 3.994 23 C -0.062 4.062 24 H 0.258 0.742 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.170 0.830 30 H 0.178 0.822 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.814 -5.631 -1.887 15.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.206 4.206 3 Si 0.886 3.114 4 H -0.208 1.208 5 H -0.161 1.161 6 H -0.177 1.177 7 C -0.647 4.647 8 H 0.046 0.954 9 C 0.142 3.858 10 H 0.057 0.943 11 C -0.109 4.109 12 Cl -0.182 7.182 13 O -0.307 6.307 14 C -0.003 4.003 15 C -0.046 4.046 16 C -0.083 4.083 17 C -0.092 4.092 18 C -0.139 4.139 19 N -0.081 5.081 20 O 0.141 5.859 21 N -0.080 5.080 22 C -0.146 4.146 23 C -0.083 4.083 24 H 0.067 0.933 25 H 0.116 0.884 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.187 0.813 30 H 0.195 0.805 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 15.041 -5.172 -1.333 15.961 hybrid contribution -0.638 -1.117 -0.152 1.295 sum 14.403 -6.289 -1.485 15.787 Atomic orbital electron populations 1.70975 1.08023 1.30518 1.45737 1.27171 0.95986 1.05735 0.91730 0.83824 0.75484 0.71763 0.80326 1.20788 1.16147 1.17659 1.22023 0.95401 0.95550 1.51702 0.95441 1.20068 0.93678 0.82178 0.89840 0.94329 1.26080 0.79233 1.04559 1.01062 1.98625 1.26055 1.98568 1.94905 1.87961 1.22963 1.29245 1.90555 1.21936 0.84178 0.91990 1.02159 1.19646 0.95540 0.96024 0.93381 1.21252 0.95118 0.94737 0.97153 1.20252 0.98959 0.92275 0.97712 1.23277 1.02948 0.90144 0.97515 1.75167 1.16643 1.18079 0.98210 1.85329 1.56425 1.32118 1.12034 1.75180 1.17688 0.96138 1.18971 1.23009 1.03005 0.97970 0.90597 1.19907 0.99198 0.88478 1.00716 0.93252 0.88430 0.89585 0.90633 0.90063 0.81286 0.80505 0.83298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.21 13.70 21.45 0.29 -52.92 16 2 C -0.01 -0.28 5.30 84.65 0.45 0.17 16 3 Si 1.07 43.26 26.28 68.60 1.80 45.07 16 4 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.24 -8.32 5.72 99.48 0.57 -7.75 16 6 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 7 C -0.61 -32.01 9.15 25.60 0.23 -31.78 16 8 H 0.03 1.64 8.06 -2.91 -0.02 1.62 16 9 C 0.20 8.46 1.95 29.85 0.06 8.52 16 10 H 0.04 1.55 6.45 -2.39 -0.02 1.53 16 11 C -0.05 -1.77 6.00 71.98 0.43 -1.34 16 12 Cl -0.21 -6.56 26.15 -2.72 -0.07 -6.64 16 13 O -0.39 -15.42 9.94 -148.98 -1.48 -16.90 16 14 C 0.07 2.17 5.62 71.24 0.40 2.57 16 15 C -0.04 -1.09 5.48 -20.03 -0.11 -1.20 16 16 C -0.06 -1.31 9.51 22.10 0.21 -1.10 16 17 C -0.07 -1.47 10.08 22.30 0.22 -1.25 16 18 C 0.01 0.33 7.76 42.62 0.33 0.66 16 19 N -0.36 -9.26 12.29 -57.46 -0.71 -9.97 16 20 O 0.38 9.73 11.67 139.35 1.63 11.36 16 21 N -0.36 -9.98 12.29 -57.47 -0.71 -10.68 16 22 C 0.01 0.15 7.76 42.62 0.33 0.48 16 23 C -0.06 -1.69 9.65 22.30 0.22 -1.47 16 24 H 0.26 15.29 8.73 -92.71 -0.81 14.48 16 25 H 0.10 3.75 4.82 -2.39 -0.01 3.74 16 26 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 27 H 0.08 1.97 8.01 -2.39 -0.02 1.95 16 28 H 0.08 2.31 5.05 -2.39 -0.01 2.30 16 29 H 0.17 2.88 8.06 -2.91 -0.02 2.85 16 30 H 0.18 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 Total: -1.00 -60.25 283.94 4.54 -55.71 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 1.00 Total: 10.70 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 2.78 Total: -25.73 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -1.12 Total: -73.57 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: 0.14 Total: -5.54 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.80 Total: 45.07 kcal Atomic # 17 Polarization: -6.56 SS G_CDS: -0.07 Total: -6.64 kcal Total: -60.25 4.54 -55.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209874634.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.130 kcal (2) G-P(sol) polarization free energy of solvation -60.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds