Wall clock time and date at job start Fri Apr 10 2020 14:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 O 1.42898 * 109.47319 * 120.00307 * 2 1 3 5 5 C 1.34929 * 116.99980 * 270.00102 * 4 2 1 6 6 H 1.08009 * 119.99811 * 0.02562 * 5 4 2 7 7 C 1.38633 * 120.00259 * 179.97438 * 5 4 2 8 8 N 1.31582 * 120.00025 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00000 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47093 * 60.00397 * 9 7 5 11 11 H 1.48504 * 109.46990 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47245 * 300.00113 * 9 7 5 13 13 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 14 14 C 1.38414 * 119.97974 * 284.72911 * 13 2 1 15 15 F 1.35103 * 119.99015 * 359.97034 * 14 13 2 16 16 C 1.38598 * 120.01674 * 179.72984 * 14 13 2 17 17 F 1.35102 * 120.01006 * 180.26732 * 16 14 13 18 18 C 1.38568 * 119.98044 * 0.54082 * 16 14 13 19 19 F 1.35101 * 120.01616 * 179.75594 * 18 16 14 20 20 C 1.38570 * 119.96404 * 359.72786 * 18 16 14 21 21 F 1.35099 * 120.00756 * 180.02562 * 20 18 16 22 22 C 1.38409 * 119.98157 * 104.99887 * 13 2 1 23 23 F 1.35101 * 119.99144 * 359.97438 * 22 13 2 24 24 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 27 27 H 0.96995 * 120.00066 * 179.97438 * 8 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2105 0.0787 2.2680 6 1 2.0140 1.1404 2.2408 7 6 2.6715 -0.5112 3.4348 8 7 2.9105 -1.8047 3.4682 9 14 2.9549 0.5305 4.9592 10 1 1.6791 1.1746 5.3628 11 1 3.4456 -0.3321 6.0640 12 1 3.9657 1.5771 4.6627 13 6 2.0323 -0.7104 -1.2305 14 6 1.9754 -2.0914 -1.3035 15 9 1.4702 -2.8020 -0.2714 16 6 2.4320 -2.7452 -2.4371 17 9 2.3715 -4.0928 -2.5104 18 6 2.9559 -2.0165 -3.4929 19 9 3.4057 -2.6534 -4.5962 20 6 3.0176 -0.6343 -3.4167 21 9 3.5277 0.0770 -4.4458 22 6 2.5554 0.0182 -2.2846 23 9 2.6149 1.3659 -2.2103 24 1 -0.3635 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 3.2334 -2.2174 4.2844 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224379178.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:46 Heat of formation + Delta-G solvation = -240.195748 kcal Electronic energy + Delta-G solvation = -22431.629597 eV Core-core repulsion = 17990.810427 eV Total energy + Delta-G solvation = -4440.819169 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.042 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -51.23083 -50.93184 -50.48173 -49.94694 -49.59304 -40.27117 -38.38425 -34.48918 -32.93457 -31.31639 -30.23795 -26.88641 -25.51240 -24.69441 -22.62020 -20.55612 -20.03058 -19.48555 -19.32671 -18.53360 -17.93071 -17.75434 -17.48570 -17.22983 -17.05399 -16.81696 -16.19597 -16.12473 -15.99899 -15.85421 -15.68562 -15.60606 -15.13186 -14.32854 -14.30688 -13.85816 -13.41031 -13.21621 -13.02177 -12.87149 -12.53526 -12.32810 -12.06506 -11.68108 -11.23901 -10.28233 -10.13929 -10.06454 -8.14305 -5.84673 -0.95452 -0.91131 1.33650 1.43810 1.49729 1.56457 1.60367 2.19334 2.34285 2.43891 2.67085 2.78228 2.89860 3.19996 3.52840 3.58122 3.86803 4.15521 4.18586 4.31330 4.38465 4.42428 4.88354 4.98086 5.08698 5.26373 5.29515 6.21699 7.28082 7.98766 9.08509 Molecular weight = 282.04amu Principal moments of inertia in cm(-1) A = 0.022671 B = 0.005890 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.744529 B = 4752.478721 C = 5360.501527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.118 3.882 3 H 0.072 0.928 4 O -0.308 6.308 5 C -0.375 4.375 6 H 0.079 0.921 7 C -0.035 4.035 8 N -0.934 5.934 9 Si 1.000 3.000 10 H -0.263 1.263 11 H -0.284 1.284 12 H -0.265 1.265 13 C -0.106 4.106 14 C 0.141 3.859 15 F -0.103 7.103 16 C 0.054 3.946 17 F -0.107 7.107 18 C 0.105 3.895 19 F -0.096 7.096 20 C 0.066 3.934 21 F -0.100 7.100 22 C 0.139 3.861 23 F -0.101 7.101 24 H 0.087 0.913 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.972 3.023 -13.930 14.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.059 3.941 3 H 0.090 0.910 4 O -0.224 6.224 5 C -0.454 4.454 6 H 0.097 0.903 7 C -0.229 4.229 8 N -0.578 5.578 9 Si 0.822 3.178 10 H -0.188 1.188 11 H -0.210 1.210 12 H -0.190 1.190 13 C -0.109 4.109 14 C 0.120 3.880 15 F -0.080 7.080 16 C 0.033 3.967 17 F -0.085 7.085 18 C 0.083 3.917 19 F -0.075 7.075 20 C 0.044 3.956 21 F -0.078 7.078 22 C 0.117 3.883 23 F -0.079 7.079 24 H 0.106 0.894 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.873 2.683 -13.881 14.261 hybrid contribution 0.257 0.137 0.619 0.684 sum -1.616 2.820 -13.261 13.654 Atomic orbital electron populations 1.22209 0.93655 1.02524 1.03087 1.20767 0.95089 0.94781 0.83467 0.90967 1.85721 1.84396 1.34781 1.17519 1.21306 1.43550 0.91760 0.88787 0.90297 1.26103 0.98268 0.97333 1.01215 1.70194 1.47711 1.11413 1.28472 0.84905 0.79031 0.77231 0.76610 1.18818 1.20969 1.18970 1.19924 1.01590 0.92031 0.97328 1.16905 0.98073 0.88779 0.84223 1.91680 1.83474 1.77243 1.55653 1.17041 1.06846 0.78629 0.94212 1.91593 1.94302 1.26392 1.96209 1.16460 1.02369 0.87985 0.84890 1.91623 1.86214 1.81076 1.48542 1.16713 1.04717 0.87282 0.86877 1.91614 1.84279 1.76979 1.54936 1.16412 1.00772 0.78395 0.92676 1.91598 1.93778 1.26432 1.96062 0.89388 0.92893 0.91804 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.33 9.47 71.98 0.68 -4.64 15 2 C 0.12 4.69 2.74 29.85 0.08 4.77 15 3 H 0.07 2.77 6.92 -2.39 -0.02 2.75 15 4 O -0.31 -16.51 8.12 -81.99 -0.67 -17.18 15 5 C -0.38 -20.77 9.77 67.91 0.66 -20.11 15 6 H 0.08 4.00 7.65 -2.91 -0.02 3.98 15 7 C -0.04 -1.99 5.49 84.82 0.47 -1.53 15 8 N -0.93 -57.76 13.67 21.61 0.30 -57.47 15 9 Si 1.00 43.54 29.55 68.60 2.03 45.57 15 10 H -0.26 -10.78 7.11 99.48 0.71 -10.07 15 11 H -0.28 -12.30 7.11 99.48 0.71 -11.60 15 12 H -0.26 -10.89 7.11 99.48 0.71 -10.18 15 13 C -0.11 -3.63 4.98 -19.78 -0.10 -3.73 15 14 C 0.14 4.96 7.01 22.40 0.16 5.12 15 15 F -0.10 -4.39 15.33 44.97 0.69 -3.70 15 16 C 0.05 1.61 7.31 22.43 0.16 1.77 15 17 F -0.11 -3.23 17.09 44.97 0.77 -2.46 15 18 C 0.10 2.68 7.31 22.43 0.16 2.85 15 19 F -0.10 -2.35 17.09 44.97 0.77 -1.58 15 20 C 0.07 1.66 7.31 22.44 0.16 1.83 15 21 F -0.10 -2.40 17.09 44.97 0.77 -1.63 15 22 C 0.14 3.93 7.25 22.40 0.16 4.09 15 23 F -0.10 -2.81 16.17 44.97 0.73 -2.08 15 24 H 0.09 2.27 8.14 -2.39 -0.02 2.25 15 25 H 0.05 1.86 7.68 -2.39 -0.02 1.84 15 26 H 0.06 2.24 8.14 -2.39 -0.02 2.22 15 27 H 0.26 15.11 8.31 -92.71 -0.77 14.34 15 Total: -1.00 -63.83 270.94 9.24 -54.59 By element: Atomic # 1 Polarization: -5.72 SS G_CDS: 1.25 Total: -4.47 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: 2.61 Total: -9.58 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.30 Total: -57.47 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.67 Total: -17.18 kcal Atomic # 9 Polarization: -15.18 SS G_CDS: 3.72 Total: -11.45 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -63.83 9.24 -54.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224379178.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.605 kcal (2) G-P(sol) polarization free energy of solvation -63.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -249.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds