Wall clock time and date at job start Fri Apr 10 2020 15:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30710 * 1 3 3 Si 1.86799 * 119.99859 * 2 1 4 4 H 1.48503 * 109.47244 * 269.99495 * 3 2 1 5 5 H 1.48501 * 109.47362 * 29.99893 * 3 2 1 6 6 H 1.48500 * 109.47253 * 149.99693 * 3 2 1 7 7 C 1.40125 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00250 * 180.02562 * 7 2 1 9 9 C 1.40677 * 120.00280 * 0.02562 * 7 2 1 10 10 N 1.34114 * 120.58114 * 351.79315 * 9 7 2 11 11 C 1.31505 * 119.86082 * 180.02562 * 10 9 7 12 12 C 1.39053 * 121.15274 * 359.97046 * 11 10 9 13 13 N 1.31870 * 121.23246 * 0.28348 * 12 11 10 14 14 C 1.33097 * 120.02476 * 359.49302 * 13 12 11 15 15 C 1.47486 * 120.55177 * 180.27210 * 14 13 12 16 16 C 1.39233 * 120.02070 * 129.75354 * 15 14 13 17 17 C 1.38294 * 120.00356 * 179.72781 * 16 15 14 18 18 C 1.37450 * 120.65610 * 0.57204 * 17 16 15 19 19 C 1.41200 * 120.69602 * 359.70143 * 18 17 16 20 20 C 1.45446 * 129.24076 * 180.02562 * 19 18 17 21 21 C 1.31813 * 114.89661 * 179.97438 * 20 19 18 22 22 S 1.75306 * 111.37788 * 0.02562 * 21 20 19 23 23 C 1.39607 * 118.93824 * 0.02562 * 19 18 17 24 24 H 0.97001 * 119.99729 * 0.02562 * 1 2 3 25 25 H 1.07999 * 119.42049 * 180.02562 * 11 10 9 26 26 H 1.07998 * 119.38376 * 180.02562 * 12 11 10 27 27 H 1.08001 * 119.99736 * 0.02562 * 16 15 14 28 28 H 1.08001 * 119.67375 * 180.27826 * 17 16 15 29 29 H 1.07997 * 119.65041 * 179.72471 * 18 17 16 30 30 H 1.08005 * 122.55139 * 359.96852 * 20 19 18 31 31 H 1.08003 * 124.31501 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6177 0.0000 4 1 2.4887 2.0464 -1.4001 5 1 1.4385 2.6527 0.7000 6 1 3.5386 1.4403 0.7001 7 6 2.0077 -1.2135 0.0005 8 1 3.0877 -1.2136 0.0010 9 6 1.3044 -2.4319 0.0005 10 7 -0.0265 -2.4514 0.1648 11 6 -0.6697 -3.5984 0.1630 12 6 0.0059 -4.8017 -0.0077 13 7 1.3145 -4.8344 -0.1679 14 6 2.0127 -3.7013 -0.1784 15 6 3.4758 -3.7240 -0.3627 16 6 4.0704 -2.9034 -1.3176 17 6 5.4429 -2.9208 -1.4863 18 6 6.2319 -3.7514 -0.7267 19 6 5.6585 -4.5996 0.2457 20 6 6.3085 -5.5418 1.1431 21 6 5.4933 -6.1956 1.9465 22 16 3.8252 -5.7229 1.6870 23 6 4.2741 -4.5828 0.4250 24 1 -0.4850 0.8401 -0.0004 25 1 -1.7415 -3.6058 0.2955 26 1 -0.5509 -5.7271 -0.0049 27 1 3.4602 -2.2498 -1.9232 28 1 5.8989 -2.2789 -2.2254 29 1 7.3016 -3.7551 -0.8751 30 1 7.3777 -5.6943 1.1504 31 1 5.8123 -6.9290 2.6723 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241400141.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:51 Heat of formation + Delta-G solvation = 64.101176 kcal Electronic energy + Delta-G solvation = -18686.183588 eV Core-core repulsion = 15829.691616 eV Total energy + Delta-G solvation = -2856.491972 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.86291 -39.84630 -36.17008 -35.98983 -34.16776 -32.91559 -30.65681 -29.97330 -28.02117 -25.24323 -24.33257 -23.77564 -22.46277 -21.21362 -19.58433 -18.78897 -17.87517 -17.07053 -16.77227 -16.41431 -15.96153 -15.91775 -15.31541 -14.94296 -14.46780 -14.37590 -14.30148 -13.64847 -13.36502 -13.25558 -13.04039 -12.72587 -12.48884 -12.10784 -12.09371 -11.94872 -11.67103 -11.53821 -11.39340 -11.06537 -10.48225 -9.64350 -9.41042 -9.33561 -8.58436 -8.35763 -6.68769 -0.12352 0.17945 0.67528 0.75424 1.10883 1.31907 1.37107 1.49738 1.53279 1.55703 2.13780 2.69873 2.88631 3.66551 3.70490 3.80502 4.11366 4.17061 4.26458 4.37309 4.51622 4.54296 4.64918 4.80279 4.91854 5.00087 5.04980 5.11479 5.13986 5.22613 5.55990 5.62247 5.67943 5.81092 6.05378 6.08527 6.40584 6.66331 7.29146 7.85529 8.19156 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.016414 B = 0.007344 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.491860 B = 3811.496958 C = 4948.405280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.021 3.979 3 Si 0.988 3.012 4 H -0.251 1.251 5 H -0.265 1.265 6 H -0.252 1.252 7 C -0.410 4.410 8 H 0.104 0.896 9 C 0.192 3.808 10 N -0.494 5.494 11 C 0.082 3.918 12 C -0.134 4.134 13 N -0.419 5.419 14 C -0.052 4.052 15 C 0.026 3.974 16 C -0.106 4.106 17 C -0.113 4.113 18 C -0.088 4.088 19 C -0.096 4.096 20 C -0.118 4.118 21 C -0.198 4.198 22 S 0.039 5.961 23 C -0.147 4.147 24 H 0.289 0.711 25 H 0.157 0.843 26 H 0.155 0.845 27 H 0.121 0.879 28 H 0.162 0.838 29 H 0.165 0.835 30 H 0.182 0.818 31 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.792 -2.825 0.227 12.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.204 4.204 3 Si 0.806 3.194 4 H -0.175 1.175 5 H -0.189 1.189 6 H -0.175 1.175 7 C -0.439 4.439 8 H 0.122 0.878 9 C 0.067 3.933 10 N -0.211 5.211 11 C -0.088 4.088 12 C -0.294 4.294 13 N -0.131 5.131 14 C -0.201 4.201 15 C 0.021 3.979 16 C -0.128 4.128 17 C -0.133 4.133 18 C -0.108 4.108 19 C -0.105 4.105 20 C -0.148 4.148 21 C -0.332 4.332 22 S 0.303 5.697 23 C -0.263 4.263 24 H 0.100 0.900 25 H 0.174 0.826 26 H 0.172 0.828 27 H 0.139 0.861 28 H 0.180 0.820 29 H 0.182 0.818 30 H 0.199 0.801 31 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 10.161 -3.211 0.970 10.700 hybrid contribution 0.430 0.809 -0.527 1.057 sum 10.591 -2.402 0.443 10.869 Atomic orbital electron populations 1.70128 1.09252 1.30483 1.25874 1.27214 0.95790 1.05019 0.92344 0.85099 0.79145 0.74795 0.80327 1.17537 1.18922 1.17510 1.20062 0.95691 0.89439 1.38734 0.87819 1.20807 0.89201 0.92981 0.90323 1.69522 1.08067 1.25862 1.17638 1.23872 1.01242 0.90011 0.93636 1.22860 0.91066 0.98803 1.16625 1.67813 1.08454 1.29776 1.07056 1.21612 0.93467 0.89999 1.15005 1.17804 0.89381 0.95517 0.95204 1.21313 0.96156 0.98412 0.96911 1.21184 0.92021 0.99577 1.00468 1.21326 1.01161 0.94436 0.93881 1.19786 0.90564 1.00190 0.99918 1.21215 1.02034 0.96040 0.95467 1.25483 0.95048 1.06592 1.06040 1.84589 1.08727 1.40047 1.36338 1.22984 0.97248 1.03253 1.02819 0.89952 0.82620 0.82809 0.86071 0.82027 0.81776 0.80121 0.78608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.73 11.54 21.86 0.25 -37.48 16 2 C 0.02 1.01 5.49 85.32 0.47 1.48 16 3 Si 0.99 35.30 29.56 68.60 2.03 37.33 16 4 H -0.25 -8.43 7.11 99.48 0.71 -7.73 16 5 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 6 H -0.25 -8.75 7.11 99.48 0.71 -8.04 16 7 C -0.41 -21.25 7.90 23.32 0.18 -21.06 16 8 H 0.10 5.07 5.82 -2.91 -0.02 5.05 16 9 C 0.19 10.69 6.67 41.54 0.28 10.96 16 10 N -0.49 -27.62 8.12 -184.13 -1.50 -29.11 16 11 C 0.08 4.01 11.17 84.94 0.95 4.96 16 12 C -0.13 -6.41 11.17 84.88 0.95 -5.46 16 13 N -0.42 -21.62 9.96 -178.82 -1.78 -23.41 16 14 C -0.05 -2.72 6.29 43.54 0.27 -2.44 16 15 C 0.03 1.22 5.20 -19.86 -0.10 1.11 16 16 C -0.11 -4.19 7.73 22.52 0.17 -4.02 16 17 C -0.11 -3.37 9.98 22.10 0.22 -3.14 16 18 C -0.09 -2.43 10.09 22.81 0.23 -2.20 16 19 C -0.10 -3.19 6.04 -20.36 -0.12 -3.31 16 20 C -0.12 -3.06 10.39 23.35 0.24 -2.82 16 21 C -0.20 -5.40 11.02 67.04 0.74 -4.66 16 22 S 0.04 1.51 22.55 -56.49 -1.27 0.23 16 23 C -0.15 -6.11 6.32 23.34 0.15 -5.97 16 24 H 0.29 13.18 8.29 -92.71 -0.77 12.41 16 25 H 0.16 6.46 8.06 -2.91 -0.02 6.44 16 26 H 0.15 6.24 8.06 -2.91 -0.02 6.22 16 27 H 0.12 4.97 7.39 -2.91 -0.02 4.94 16 28 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 29 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 30 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 31 H 0.20 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -68.41 288.34 3.53 -64.88 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 1.17 Total: 24.11 kcal Atomic # 6 Polarization: -41.19 SS G_CDS: 4.63 Total: -36.56 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -3.02 Total: -90.00 kcal Atomic # 14 Polarization: 35.30 SS G_CDS: 2.03 Total: 37.33 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -1.27 Total: 0.23 kcal Total: -68.41 3.53 -64.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241400141.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.981 kcal (2) G-P(sol) polarization free energy of solvation -68.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds