Wall clock time and date at job start Fri Apr 10 2020 14:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30743 * 1 3 3 Si 1.86806 * 119.99628 * 2 1 4 4 H 1.48501 * 109.46916 * 239.99484 * 3 2 1 5 5 H 1.48501 * 109.47173 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47026 * 119.99818 * 3 2 1 7 7 C 1.40035 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00075 * 197.29492 * 7 2 1 9 9 C 1.41525 * 120.00405 * 17.29578 * 7 2 1 10 10 C 1.41155 * 120.98293 * 23.16905 * 9 7 2 11 11 C 1.37720 * 119.08133 * 180.02562 * 10 9 7 12 12 N 1.31933 * 121.15978 * 359.73691 * 11 10 9 13 13 C 1.32810 * 122.20094 * 0.54010 * 12 11 10 14 14 C 1.48322 * 119.61708 * 179.74918 * 13 12 11 15 15 C 1.39882 * 119.83090 * 179.70292 * 14 13 12 16 16 C 1.36345 * 120.10180 * 179.97438 * 15 14 13 17 17 C 1.39463 * 120.40713 * 0.02562 * 16 15 14 18 18 S 1.76146 * 131.55039 * 179.97438 * 17 16 15 19 19 C 1.70627 * 90.85107 * 180.02562 * 18 17 16 20 20 N 1.27904 * 111.55306 * 359.97438 * 19 18 17 21 21 C 1.34698 * 117.83785 * 359.76135 * 20 19 18 22 22 C 1.38385 * 119.82794 * 359.71550 * 14 13 12 23 23 C 1.38927 * 120.76541 * 359.46439 * 13 12 11 24 24 H 0.96996 * 119.99986 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.45807 * 359.97438 * 10 9 7 26 26 H 1.08001 * 119.42034 * 179.97438 * 11 10 9 27 27 H 1.07998 * 119.94289 * 359.97438 * 15 14 13 28 28 H 1.08004 * 119.79681 * 179.97438 * 16 15 14 29 29 H 1.07999 * 124.22407 * 180.02562 * 19 18 17 30 30 H 1.07996 * 119.96729 * 359.97438 * 22 14 13 31 31 H 1.08005 * 120.62016 * 180.28572 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.0952 1.6965 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0951 1.6966 1.2126 7 6 2.0076 -1.2127 0.0005 8 1 3.0511 -1.2337 0.2786 9 6 1.3481 -2.4109 -0.3633 10 6 0.1903 -2.3868 -1.1704 11 6 -0.4205 -3.5762 -1.5004 12 7 0.0608 -4.7304 -1.0800 13 6 1.1433 -4.8093 -0.3146 14 6 1.6316 -6.1374 0.1300 15 6 2.7749 -6.2260 0.9310 16 6 3.2283 -7.4439 1.3433 17 6 2.5589 -8.6094 0.9710 18 16 2.8780 -10.3046 1.3273 19 6 1.5148 -10.7789 0.4173 20 7 0.9094 -9.7693 -0.0830 21 6 1.4094 -8.5452 0.1741 22 6 0.9539 -7.2825 -0.2501 23 6 1.8271 -3.6625 0.0695 24 1 -0.4850 0.8400 -0.0004 25 1 -0.2114 -1.4486 -1.5235 26 1 -1.3069 -3.5641 -2.1173 27 1 3.2992 -5.3282 1.2233 28 1 4.1118 -7.5067 1.9614 29 1 1.2017 -11.8035 0.2813 30 1 0.0717 -7.2070 -0.8685 31 1 2.7098 -3.7296 0.6882 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241866487.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:40 Heat of formation + Delta-G solvation = 62.845349 kcal Electronic energy + Delta-G solvation = -17862.698713 eV Core-core repulsion = 15006.152284 eV Total energy + Delta-G solvation = -2856.546429 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.43612 -40.18708 -37.86916 -36.02231 -33.10438 -32.73956 -31.44201 -29.71175 -27.91192 -26.06963 -24.59079 -23.85434 -22.54900 -21.73471 -19.69449 -19.00344 -17.63571 -17.45866 -16.94513 -16.41953 -16.04183 -15.82022 -15.79677 -15.23650 -14.81721 -14.51206 -14.44618 -14.25975 -13.64158 -13.30164 -13.07303 -12.85727 -12.74899 -12.67191 -12.08438 -11.93428 -11.72567 -11.30707 -11.16042 -10.64836 -10.09817 -10.03731 -9.94356 -9.39697 -8.79920 -8.68984 -6.59590 -0.57358 -0.21457 0.30820 0.72201 0.87814 1.01502 1.39321 1.44092 1.51756 1.60398 2.17265 2.57230 2.87232 3.01848 3.50164 3.63435 3.72686 4.09140 4.14714 4.29886 4.35377 4.54883 4.75209 4.84700 4.89623 4.94874 5.10466 5.13501 5.19529 5.37503 5.44064 5.58527 5.68508 5.87741 6.13754 6.47212 6.60375 6.75577 6.77055 7.62239 8.21360 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.039283 B = 0.003574 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.608846 B = 7832.884500 C = 8469.570943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.038 3.962 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.255 1.255 7 C -0.483 4.483 8 H 0.089 0.911 9 C 0.099 3.901 10 C -0.232 4.232 11 C 0.085 3.915 12 N -0.578 5.578 13 C 0.146 3.854 14 C -0.024 4.024 15 C -0.090 4.090 16 C -0.065 4.065 17 C -0.201 4.201 18 S 0.151 5.849 19 C 0.069 3.931 20 N -0.504 5.504 21 C 0.056 3.944 22 C -0.056 4.056 23 C -0.264 4.264 24 H 0.294 0.706 25 H 0.118 0.882 26 H 0.146 0.854 27 H 0.152 0.848 28 H 0.168 0.832 29 H 0.244 0.756 30 H 0.123 0.877 31 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.140 -13.255 3.884 15.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.179 4.179 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.179 1.179 7 C -0.514 4.514 8 H 0.107 0.893 9 C 0.091 3.909 10 C -0.255 4.255 11 C -0.067 4.067 12 N -0.294 5.294 13 C 0.013 3.987 14 C -0.027 4.027 15 C -0.112 4.112 16 C -0.087 4.087 17 C -0.320 4.320 18 S 0.404 5.596 19 C -0.235 4.235 20 N -0.217 5.217 21 C -0.062 4.062 22 C -0.078 4.078 23 C -0.287 4.287 24 H 0.105 0.895 25 H 0.136 0.864 26 H 0.164 0.836 27 H 0.169 0.831 28 H 0.186 0.814 29 H 0.260 0.740 30 H 0.141 0.859 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.690 -14.615 3.848 16.527 hybrid contribution -0.318 2.529 -0.371 2.576 sum 6.371 -12.086 3.477 14.098 Atomic orbital electron populations 1.69807 1.09303 1.31339 1.33307 1.26893 0.95493 1.04882 0.90674 0.85143 0.78733 0.74936 0.80318 1.18346 1.19180 1.17933 1.19916 0.98616 0.91680 1.41150 0.89304 1.18166 0.91357 0.93231 0.88156 1.22285 1.01090 0.98340 1.03768 1.22319 0.98571 0.88007 0.97841 1.67374 1.15169 1.29193 1.17617 1.19495 0.92363 0.91797 0.95059 1.18577 0.95744 0.90625 0.97804 1.21189 0.94837 0.99039 0.96143 1.20268 1.00195 0.88463 0.99820 1.24251 1.01240 1.00513 1.06032 1.83521 1.29631 0.94120 1.52316 1.28838 0.95221 1.03286 0.96160 1.66226 1.32723 0.98207 1.24543 1.19220 0.94681 0.91964 1.00382 1.20662 0.99725 0.88535 0.98878 1.22062 1.05241 0.92391 1.09002 0.89535 0.86406 0.83648 0.83051 0.81418 0.73992 0.85877 0.85651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.52 10.90 21.84 0.24 -40.28 16 2 C 0.04 1.82 5.20 85.29 0.44 2.27 16 3 Si 0.99 35.65 29.59 68.60 2.03 37.68 16 4 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 5 H -0.27 -9.16 7.11 99.48 0.71 -8.45 16 6 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 7 C -0.48 -24.70 9.12 23.52 0.21 -24.49 16 8 H 0.09 4.26 7.91 -2.91 -0.02 4.23 16 9 C 0.10 5.23 5.61 -21.12 -0.12 5.11 16 10 C -0.23 -12.20 8.80 22.86 0.20 -11.99 16 11 C 0.08 4.16 11.15 84.55 0.94 5.10 16 12 N -0.58 -28.75 9.35 -185.38 -1.73 -30.48 16 13 C 0.15 6.93 6.72 41.85 0.28 7.22 16 14 C -0.02 -0.95 5.86 -20.16 -0.12 -1.07 16 15 C -0.09 -2.89 9.35 22.23 0.21 -2.68 16 16 C -0.07 -1.71 10.00 22.12 0.22 -1.49 16 17 C -0.20 -5.62 6.56 23.00 0.15 -5.47 16 18 S 0.15 2.78 23.17 -56.49 -1.31 1.48 16 19 C 0.07 1.38 12.10 130.81 1.58 2.96 16 20 N -0.50 -15.33 10.57 -194.85 -2.06 -17.39 16 21 C 0.06 1.91 6.99 39.76 0.28 2.19 16 22 C -0.06 -2.22 9.63 22.93 0.22 -2.00 16 23 C -0.26 -12.79 9.24 23.07 0.21 -12.58 16 24 H 0.29 13.16 8.29 -92.71 -0.77 12.39 16 25 H 0.12 6.29 6.16 -2.91 -0.02 6.27 16 26 H 0.15 6.23 8.06 -2.91 -0.02 6.20 16 27 H 0.15 4.41 6.14 -2.91 -0.02 4.39 16 28 H 0.17 3.02 8.06 -2.91 -0.02 3.00 16 29 H 0.24 2.36 8.06 -2.91 -0.02 2.33 16 30 H 0.12 5.26 7.48 -2.91 -0.02 5.24 16 31 H 0.13 5.36 6.15 -2.91 -0.02 5.35 16 Total: -1.00 -64.64 287.52 3.07 -61.57 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 1.18 Total: 24.36 kcal Atomic # 6 Polarization: -41.65 SS G_CDS: 4.72 Total: -36.93 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -3.55 Total: -88.15 kcal Atomic # 14 Polarization: 35.65 SS G_CDS: 2.03 Total: 37.68 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -1.31 Total: 1.48 kcal Total: -64.64 3.07 -61.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241866487.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.411 kcal (2) G-P(sol) polarization free energy of solvation -64.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds