Wall clock time and date at job start Fri Apr 10 2020 15:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86805 * 120.00217 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72653 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72562 * 3 2 1 6 6 H 1.48494 * 109.47142 * 149.72487 * 3 2 1 7 7 C 1.40115 * 119.99883 * 179.72675 * 2 1 3 8 8 H 1.08000 * 119.99546 * 179.97438 * 7 2 1 9 9 C 1.41001 * 119.99965 * 0.02562 * 7 2 1 10 10 N 1.33673 * 119.12674 * 359.72813 * 9 7 2 11 11 C 1.31564 * 120.83089 * 179.71358 * 10 9 7 12 12 C 1.40495 * 119.08711 * 0.55068 * 11 10 9 13 13 C 1.47829 * 120.79170 * 179.70281 * 12 11 10 14 14 C 1.40232 * 119.95038 * 179.75088 * 13 12 11 15 15 C 1.36028 * 120.19273 * 179.69981 * 14 13 12 16 16 C 1.40144 * 120.67917 * 0.59427 * 15 14 13 17 17 S 1.75961 * 130.36391 * 179.70161 * 16 15 14 18 18 C 1.75276 * 92.23074 * 179.97438 * 17 16 15 19 19 C 1.31760 * 111.46351 * 359.97438 * 18 17 16 20 20 C 1.39943 * 120.03102 * 359.67976 * 16 15 14 21 21 C 1.38731 * 119.95527 * 0.02562 * 13 12 11 22 22 C 1.40485 * 118.41187 * 359.72833 * 12 11 10 23 23 N 1.31561 * 119.09000 * 359.97438 * 22 12 11 24 24 H 0.97000 * 119.99610 * 0.27113 * 1 2 3 25 25 H 1.08003 * 120.45546 * 180.27474 * 11 10 9 26 26 H 1.07998 * 119.90112 * 359.97438 * 14 13 12 27 27 H 1.08003 * 119.65644 * 180.30079 * 15 14 13 28 28 H 1.07999 * 124.27244 * 180.02562 * 18 17 16 29 29 H 1.07995 * 122.55956 * 179.97438 * 19 18 17 30 30 H 1.08004 * 119.96388 * 359.97438 * 21 13 12 31 31 H 1.08005 * 120.45454 * 180.02562 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.4941 2.0430 -1.4001 5 1 1.4354 2.6543 0.6942 6 1 3.5354 1.4418 0.7058 7 6 2.0073 -1.2134 0.0058 8 1 3.0873 -1.2134 0.0054 9 6 1.3023 -2.4345 0.0111 10 7 -0.0343 -2.4141 0.0160 11 6 -0.7257 -3.5334 0.0154 12 6 -0.0402 -4.7597 0.0212 13 6 -0.7794 -6.0399 0.0273 14 6 -0.0773 -7.2538 0.0278 15 6 -0.7524 -8.4346 0.0395 16 6 -2.1537 -8.4571 0.0388 17 16 -3.2716 -9.8160 0.0451 18 6 -4.6675 -8.7560 0.0395 19 6 -4.3099 -7.4878 0.0340 20 6 -2.8735 -7.2570 0.0326 21 6 -2.1667 -6.0387 0.0267 22 6 1.3645 -4.7402 0.0217 23 7 1.9882 -3.5818 0.0161 24 1 -0.4849 0.8401 -0.0040 25 1 -1.8055 -3.5098 0.0149 26 1 1.0027 -7.2510 0.0233 27 1 -0.2029 -9.3643 0.0447 28 1 -5.6916 -9.0989 0.0413 29 1 -5.0282 -6.6814 0.0296 30 1 -2.7054 -5.1026 0.0223 31 1 1.9248 -5.6636 0.0256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244296306.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:48 Heat of formation + Delta-G solvation = 69.629336 kcal Electronic energy + Delta-G solvation = -17836.959717 eV Core-core repulsion = 14980.707464 eV Total energy + Delta-G solvation = -2856.252253 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.10594 -40.02514 -36.51038 -35.61865 -33.95997 -33.19405 -31.12971 -30.11403 -27.85453 -25.24209 -24.74322 -23.55124 -22.70677 -21.01378 -19.86370 -18.99403 -17.91880 -17.25591 -16.73980 -16.40565 -16.06698 -15.69547 -15.11160 -14.74041 -14.53654 -14.52335 -14.43442 -13.95322 -13.57339 -13.19388 -12.98916 -12.83261 -12.71473 -12.38281 -11.98845 -11.96468 -11.64088 -11.38646 -11.21784 -11.05705 -10.75116 -9.98470 -9.33426 -9.22730 -8.52356 -8.47028 -6.74577 -0.22255 -0.02141 0.67084 0.92573 1.04770 1.10240 1.39424 1.42953 1.54785 1.57368 2.16733 2.61350 2.97281 3.68445 3.84161 3.84838 3.88724 3.98676 4.08676 4.33107 4.36875 4.43673 4.49299 4.81378 4.84922 4.90632 4.99040 5.08317 5.19275 5.24663 5.37551 5.50511 5.73560 5.82852 5.96918 6.06973 6.43102 6.51446 7.10114 8.12627 8.26450 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.045269 B = 0.003434 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.376268 B = 8150.667412 C = 8759.197141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.733 5.733 2 C 0.020 3.980 3 Si 1.003 2.997 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.255 1.255 7 C -0.415 4.415 8 H 0.095 0.905 9 C 0.350 3.650 10 N -0.539 5.539 11 C 0.163 3.837 12 C -0.316 4.316 13 C 0.014 3.986 14 C -0.120 4.120 15 C -0.074 4.074 16 C -0.180 4.180 17 S 0.080 5.920 18 C -0.183 4.183 19 C -0.134 4.134 20 C -0.079 4.079 21 C -0.119 4.119 22 C 0.176 3.824 23 N -0.618 5.618 24 H 0.289 0.711 25 H 0.151 0.849 26 H 0.142 0.858 27 H 0.148 0.852 28 H 0.198 0.802 29 H 0.161 0.839 30 H 0.125 0.875 31 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.438 -12.450 0.047 14.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.354 5.354 2 C -0.205 4.205 3 Si 0.821 3.179 4 H -0.183 1.183 5 H -0.185 1.185 6 H -0.178 1.178 7 C -0.448 4.448 8 H 0.113 0.887 9 C 0.117 3.883 10 N -0.256 5.256 11 C -0.012 4.012 12 C -0.325 4.325 13 C 0.010 3.990 14 C -0.141 4.141 15 C -0.096 4.096 16 C -0.295 4.295 17 S 0.342 5.658 18 C -0.316 4.316 19 C -0.164 4.164 20 C -0.087 4.087 21 C -0.139 4.139 22 C 0.003 3.997 23 N -0.337 5.337 24 H 0.100 0.900 25 H 0.169 0.831 26 H 0.160 0.840 27 H 0.166 0.834 28 H 0.215 0.785 29 H 0.178 0.822 30 H 0.143 0.857 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.991 -12.881 0.065 14.656 hybrid contribution -0.404 1.411 -0.020 1.468 sum -7.395 -11.470 0.045 13.647 Atomic orbital electron populations 1.70183 1.09086 1.30280 1.25864 1.27185 0.95962 1.04905 0.92476 0.84894 0.78817 0.74267 0.79875 1.18254 1.18477 1.17816 1.19823 0.95365 0.88998 1.40633 0.88683 1.20365 0.86634 0.91885 0.89435 1.69322 1.08184 1.28353 1.19741 1.23518 1.00125 0.88152 0.89455 1.19956 0.95271 0.93876 1.23441 1.18454 0.92498 0.91783 0.96274 1.20998 1.00745 0.90898 1.01458 1.20317 0.90750 0.98918 0.99634 1.22967 0.98352 0.97055 1.11126 1.83795 0.95147 1.07224 1.79664 1.25357 1.03584 0.95861 1.06796 1.21181 0.93181 0.98214 1.03832 1.19504 0.93603 0.92830 1.02717 1.21051 0.93025 0.96646 1.03188 1.23311 0.91284 0.96220 0.88919 1.68675 1.41353 0.99131 1.24540 0.90021 0.83149 0.84020 0.83389 0.78521 0.82175 0.85690 0.81416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.91 11.40 21.85 0.25 -37.66 16 2 C 0.02 0.97 5.50 85.32 0.47 1.44 16 3 Si 1.00 36.39 29.56 68.60 2.03 38.42 16 4 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 5 H -0.26 -8.83 7.11 99.48 0.71 -8.13 16 6 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 7 C -0.41 -22.71 9.35 23.40 0.22 -22.49 16 8 H 0.10 4.99 7.85 -2.91 -0.02 4.97 16 9 C 0.35 19.99 7.35 134.87 0.99 20.98 16 10 N -0.54 -30.04 7.82 -193.16 -1.51 -31.56 16 11 C 0.16 7.80 10.69 85.28 0.91 8.71 16 12 C -0.32 -13.73 5.94 -19.64 -0.12 -13.85 16 13 C 0.01 0.49 5.87 -20.14 -0.12 0.37 16 14 C -0.12 -3.66 9.38 22.24 0.21 -3.46 16 15 C -0.07 -1.99 9.99 22.22 0.22 -1.77 16 16 C -0.18 -5.02 6.49 23.15 0.15 -4.87 16 17 S 0.08 1.71 23.23 -56.49 -1.31 0.39 16 18 C -0.18 -3.51 11.01 67.08 0.74 -2.77 16 19 C -0.13 -3.12 10.39 23.40 0.24 -2.88 16 20 C -0.08 -2.34 6.03 -20.36 -0.12 -2.46 16 21 C -0.12 -3.98 9.52 23.02 0.22 -3.76 16 22 C 0.18 7.90 10.70 85.28 0.91 8.81 16 23 N -0.62 -32.76 10.34 -193.17 -2.00 -34.75 16 24 H 0.29 13.19 8.29 -92.71 -0.77 12.42 16 25 H 0.15 6.32 6.31 -2.91 -0.02 6.30 16 26 H 0.14 3.76 6.26 -2.91 -0.02 3.75 16 27 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 28 H 0.20 2.33 8.06 -2.91 -0.02 2.30 16 29 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 30 H 0.13 4.03 6.24 -2.91 -0.02 4.01 16 31 H 0.17 6.04 6.31 -2.91 -0.02 6.02 16 Total: -1.00 -65.65 287.30 3.57 -62.08 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 1.19 Total: 21.09 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 4.93 Total: -18.01 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -3.26 Total: -103.97 kcal Atomic # 14 Polarization: 36.39 SS G_CDS: 2.03 Total: 38.42 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -1.31 Total: 0.39 kcal Total: -65.65 3.57 -62.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244296306.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.706 kcal (2) G-P(sol) polarization free energy of solvation -65.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds