Wall clock time and date at job start Fri Apr 10 2020 14:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86801 * 119.99794 * 2 1 4 4 H 1.48499 * 109.46751 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47328 * 300.00030 * 3 2 1 6 6 H 1.48498 * 109.47068 * 60.00318 * 3 2 1 7 7 C 1.37874 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99816 * 173.69367 * 7 2 1 9 9 C 1.50698 * 120.00095 * 353.68856 * 7 2 1 10 10 C 1.53005 * 115.54883 * 85.65970 * 9 7 2 11 11 S 1.81396 * 109.47255 * 65.33145 * 10 9 7 12 12 C 1.81397 * 102.99887 * 179.97438 * 11 10 9 13 13 C 1.50700 * 109.47020 * 179.97438 * 12 11 10 14 14 C 1.38261 * 119.99601 * 269.72326 * 13 12 11 15 15 C 1.38223 * 120.02461 * 179.76449 * 14 13 12 16 16 C 1.38241 * 120.01382 * 0.51470 * 15 14 13 17 17 C 1.38331 * 119.98548 * 359.74383 * 16 15 14 18 18 Cl 1.73601 * 120.01167 * 180.02562 * 17 16 15 19 19 C 1.38195 * 119.99154 * 90.00368 * 13 12 11 20 20 C 1.52997 * 117.49968 * 231.32809 * 9 7 2 21 21 C 1.52999 * 117.50029 * 299.98474 * 9 7 2 22 22 H 0.97000 * 119.99521 * 354.97327 * 1 2 3 23 23 H 1.09000 * 109.46589 * 305.32862 * 10 9 7 24 24 H 1.08999 * 109.47198 * 185.33189 * 10 9 7 25 25 H 1.08995 * 109.47394 * 300.00260 * 12 11 10 26 26 H 1.09003 * 109.47075 * 60.00365 * 12 11 10 27 27 H 1.08001 * 119.98860 * 0.02562 * 14 13 12 28 28 H 1.07996 * 119.99326 * 180.25510 * 15 14 13 29 29 H 1.07995 * 120.00555 * 179.76588 * 16 15 14 30 30 H 1.08008 * 120.00908 * 359.95360 * 19 13 12 31 31 H 1.09000 * 117.49838 * 215.00747 * 20 9 7 32 32 H 1.09002 * 117.49761 * 0.02562 * 20 9 7 33 33 H 1.08997 * 117.49818 * 359.97438 * 21 9 7 34 34 H 1.09002 * 117.49481 * 144.97174 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0797 -1.1968 -0.1033 9 6 1.2579 -2.4952 0.1424 10 6 0.7097 -3.0876 -1.1575 11 16 2.0896 -3.5543 -2.2385 12 6 1.2529 -4.2251 -3.7016 13 6 2.2817 -4.6642 -4.7114 14 6 2.7331 -3.7754 -5.6695 15 6 3.6803 -4.1760 -6.5930 16 6 4.1691 -5.4688 -6.5658 17 6 3.7139 -6.3601 -5.6108 18 17 4.3276 -7.9836 -5.5757 19 6 2.7695 -5.9569 -4.6833 20 6 1.7409 -3.4727 1.2157 21 6 0.4342 -2.7010 1.4152 22 1 -0.4849 0.8368 0.0736 23 1 0.0884 -2.3468 -1.6606 24 1 0.1114 -3.9700 -0.9307 25 1 0.6412 -5.0791 -3.4107 26 1 0.6177 -3.4562 -4.1414 27 1 2.3486 -2.7664 -5.6937 28 1 4.0356 -3.4801 -7.3385 29 1 4.9063 -5.7828 -7.2898 30 1 2.4141 -6.6523 -3.9372 31 1 1.6682 -4.5378 0.9958 32 1 2.5985 -3.1744 1.8188 33 1 0.4327 -1.8954 2.1494 34 1 -0.4985 -3.2580 1.3264 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594888322.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:23 Heat of formation + Delta-G solvation = 28.959092 kcal Electronic energy + Delta-G solvation = -16622.848921 eV Core-core repulsion = 13865.940567 eV Total energy + Delta-G solvation = -2756.908354 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 282.054 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.39419 -36.59899 -36.55551 -32.80077 -31.94196 -30.79547 -27.86426 -26.91133 -25.28596 -22.74433 -21.64168 -21.12388 -19.21845 -17.11725 -16.20497 -15.68388 -15.53575 -15.22613 -14.62945 -14.04043 -13.91756 -13.71558 -13.37458 -13.23030 -12.94141 -12.64245 -11.88519 -11.73012 -11.56458 -11.42754 -11.25927 -11.01635 -10.90690 -10.87607 -10.47189 -10.21726 -9.65165 -9.51539 -8.90336 -8.82949 -8.62560 -8.43960 -8.02098 -6.84627 -6.05720 -4.10688 1.00478 1.15612 2.02725 2.44014 3.28596 3.37340 3.42628 3.43987 3.68790 4.41613 4.60075 4.71860 4.97537 5.15082 5.21974 5.23687 5.36163 5.37659 5.62727 5.72303 5.86665 5.95167 6.11620 6.19562 6.25272 6.38249 6.46506 6.51528 6.71343 6.72433 6.79485 7.05307 7.38818 7.47491 7.88074 8.38889 8.91690 9.55631 11.03441 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.023268 B = 0.003943 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.094266 B = 7099.193955 C = 7760.768693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.072 3.928 3 Si 0.888 3.112 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.483 4.483 8 H 0.063 0.937 9 C 0.054 3.946 10 C -0.029 4.029 11 S -0.230 6.230 12 C -0.069 4.069 13 C -0.042 4.042 14 C -0.098 4.098 15 C -0.107 4.107 16 C -0.116 4.116 17 C -0.034 4.034 18 Cl -0.077 7.077 19 C -0.097 4.097 20 C -0.205 4.205 21 C -0.148 4.148 22 H 0.259 0.741 23 H 0.084 0.916 24 H 0.047 0.953 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.569 -10.754 -11.848 16.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.131 4.131 3 Si 0.715 3.285 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.520 4.520 8 H 0.081 0.919 9 C 0.053 3.947 10 C -0.178 4.178 11 S 0.000 6.000 12 C -0.216 4.216 13 C -0.044 4.044 14 C -0.118 4.118 15 C -0.125 4.125 16 C -0.135 4.135 17 C -0.060 4.060 18 Cl -0.048 7.048 19 C -0.117 4.117 20 C -0.242 4.242 21 C -0.188 4.188 22 H 0.068 0.932 23 H 0.102 0.898 24 H 0.066 0.934 25 H 0.101 0.899 26 H 0.106 0.894 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.148 0.852 30 H 0.152 0.848 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.525 -10.659 -11.715 16.472 hybrid contribution -0.972 0.704 -0.100 1.204 sum 3.553 -9.954 -11.815 15.853 Atomic orbital electron populations 1.70025 1.05857 1.26677 1.49359 1.24941 0.94771 0.98873 0.94521 0.86599 0.80491 0.83868 0.77515 1.19580 1.21043 1.21054 1.20431 0.92968 0.88440 1.50195 0.91927 1.18452 0.98160 0.93949 0.84172 1.23137 0.95463 1.00430 0.98734 1.87175 1.17747 1.80061 1.14968 1.22328 0.98593 1.03476 0.97219 1.19273 0.97114 0.92886 0.95113 1.21224 0.96662 0.99789 0.94140 1.21081 0.96929 0.95318 0.99177 1.21017 1.00811 0.93295 0.98422 1.20837 0.99406 0.86563 0.99221 1.98360 1.86840 1.21411 1.98203 1.20926 0.96400 0.96338 0.98076 1.23020 0.98399 0.95814 1.06980 1.22577 0.92213 1.01192 1.02824 0.93153 0.89778 0.93403 0.89897 0.89357 0.84963 0.85017 0.85176 0.84829 0.91419 0.90274 0.89788 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.34 12.90 55.43 0.71 -23.63 16 2 C 0.07 1.93 5.39 -17.82 -0.10 1.83 16 3 Si 0.89 20.99 29.55 -169.99 -5.02 15.97 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.48 -12.95 8.49 -34.44 -0.29 -13.24 16 8 H 0.06 1.74 7.82 -52.48 -0.41 1.32 16 9 C 0.05 1.31 1.34 -155.66 -0.21 1.10 16 10 C -0.03 -0.64 5.80 37.16 0.22 -0.42 16 11 S -0.23 -4.51 21.41 -107.50 -2.30 -6.81 16 12 C -0.07 -1.02 6.07 36.01 0.22 -0.80 16 13 C -0.04 -0.58 5.14 -104.63 -0.54 -1.12 16 14 C -0.10 -1.22 9.70 -39.58 -0.38 -1.61 16 15 C -0.11 -1.14 10.05 -39.59 -0.40 -1.54 16 16 C -0.12 -1.25 9.83 -39.55 -0.39 -1.64 16 17 C -0.03 -0.41 6.32 -39.50 -0.25 -0.66 16 18 Cl -0.08 -0.85 28.96 -51.86 -1.50 -2.36 16 19 C -0.10 -1.26 9.49 -39.55 -0.38 -1.63 16 20 C -0.20 -4.45 9.96 -26.70 -0.27 -4.72 16 21 C -0.15 -3.40 9.40 -26.70 -0.25 -3.65 16 22 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 23 H 0.08 1.99 8.14 -51.92 -0.42 1.56 16 24 H 0.05 0.95 8.09 -51.92 -0.42 0.53 16 25 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 26 H 0.09 1.27 8.08 -51.92 -0.42 0.85 16 27 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 28 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 29 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 33 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 324.44 15.07 4.89 4.89 Total: -1.00 -27.84 324.44 -10.85 -38.69 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -4.61 Total: 1.33 kcal Atomic # 6 Polarization: -25.07 SS G_CDS: -3.01 Total: -28.09 kcal Atomic # 7 Polarization: -24.34 SS G_CDS: 0.71 Total: -23.63 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -4.51 SS G_CDS: -2.30 Total: -6.81 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.84 -10.85 -38.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594888322.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.646 kcal (2) G-P(sol) polarization free energy of solvation -27.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds