Wall clock time and date at job start Fri Apr 10 2020 14:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 120.00006 * 2 1 4 4 H 1.48494 * 109.47303 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46776 * 300.00031 * 3 2 1 6 6 H 1.48498 * 109.47222 * 59.99714 * 3 2 1 7 7 C 1.38945 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99676 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00085 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99996 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00058 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00058 * 180.02562 * 10 9 7 13 13 N 1.46504 * 109.47281 * 179.97438 * 12 10 9 14 14 C 1.29436 * 119.99704 * 114.99989 * 13 12 10 15 15 C 1.47380 * 119.99701 * 180.27816 * 14 13 12 16 16 C 1.39715 * 120.18487 * 179.44562 * 15 14 13 17 17 C 1.37928 * 119.88902 * 179.74174 * 16 15 14 18 18 Cl 1.73599 * 119.86656 * 180.25805 * 17 16 15 19 19 C 1.38614 * 120.26628 * 0.53766 * 17 16 15 20 20 C 1.38103 * 120.37764 * 359.71815 * 19 17 16 21 21 C 1.38630 * 120.10779 * 0.02562 * 20 19 17 22 22 O 1.35724 * 120.13752 * 179.97438 * 21 20 19 23 23 H 0.97000 * 120.00454 * 0.02562 * 1 2 3 24 24 H 0.97000 * 120.00476 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.47065 * 59.99929 * 12 10 9 26 26 H 1.09000 * 109.47298 * 299.99612 * 12 10 9 27 27 H 1.08002 * 119.99865 * 359.97438 * 14 13 12 28 28 H 1.08000 * 120.05460 * 0.02562 * 16 15 14 29 29 H 1.07999 * 119.81113 * 179.70115 * 19 17 16 30 30 H 1.08005 * 119.94272 * 180.02562 * 20 19 17 31 31 H 0.96705 * 114.00006 * 269.98281 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1958 -5.9764 -0.0016 14 6 2.2562 -6.7766 1.0140 15 6 3.2182 -7.8932 1.0161 16 6 3.2948 -8.7523 2.1152 17 6 4.1936 -9.7985 2.1085 18 17 4.2836 -10.8697 3.4716 19 6 5.0293 -9.9946 1.0201 20 6 4.9666 -9.1489 -0.0699 21 6 4.0654 -8.0956 -0.0819 22 8 4.0037 -7.2637 -1.1525 23 1 -0.4851 0.8400 -0.0004 24 1 0.3533 -2.3906 -0.0005 25 1 0.6175 -4.9204 -0.8914 26 1 0.6168 -4.9209 0.8886 27 1 1.6051 -6.6231 1.8619 28 1 2.6481 -8.6002 2.9667 29 1 5.7337 -10.8133 1.0247 30 1 5.6208 -9.3084 -0.9143 31 1 4.5924 -6.4991 -1.0910 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794676896.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:18 Heat of formation + Delta-G solvation = -35.009443 kcal Electronic energy + Delta-G solvation = -18439.479863 eV Core-core repulsion = 15133.504411 eV Total energy + Delta-G solvation = -3305.975452 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.90644 -38.31161 -37.16561 -35.99797 -35.61865 -33.94456 -31.69923 -31.24442 -29.74163 -27.72753 -24.86256 -23.24842 -22.76478 -20.39509 -19.24346 -18.12453 -17.91163 -16.82183 -16.23049 -15.92085 -15.39898 -14.79365 -14.60924 -14.47408 -14.19087 -13.70105 -13.51912 -13.37112 -12.69728 -12.54278 -12.30536 -11.87235 -11.58482 -11.55703 -11.16176 -11.11840 -10.66832 -10.49151 -10.38898 -10.29063 -9.59355 -9.03371 -9.02339 -8.59090 -8.23431 -8.04697 -6.48120 -3.89585 0.65492 0.97131 1.91876 2.48324 3.12158 3.23452 3.30558 3.50403 3.79921 4.05156 4.19474 4.27763 4.58535 4.80079 4.85696 5.08527 5.16385 5.19554 5.44918 5.59140 5.60741 5.79753 5.87447 5.93329 6.06089 6.22605 6.28454 6.48674 7.49232 7.85731 7.89876 8.02986 8.52871 9.10330 9.44968 9.95586 10.69430 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.034246 B = 0.002979 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.425674 B = 9395.382973 C = 9596.665887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.023 3.977 3 Si 0.931 3.069 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.104 0.896 9 N -0.560 5.560 10 C 0.446 3.554 11 O -0.582 6.582 12 C 0.018 3.982 13 N -0.436 5.436 14 C 0.150 3.850 15 C -0.074 4.074 16 C -0.072 4.072 17 C -0.055 4.055 18 Cl -0.073 7.073 19 C -0.086 4.086 20 C -0.146 4.146 21 C 0.162 3.838 22 O -0.471 6.471 23 H 0.272 0.728 24 H 0.393 0.607 25 H 0.106 0.894 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.140 0.860 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.806 -18.910 3.964 19.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.430 4.430 8 H 0.122 0.878 9 N -0.196 5.196 10 C 0.231 3.769 11 O -0.466 6.466 12 C -0.115 4.115 13 N -0.144 5.144 14 C -0.061 4.061 15 C -0.075 4.075 16 C -0.093 4.093 17 C -0.081 4.081 18 Cl -0.045 7.045 19 C -0.106 4.106 20 C -0.164 4.164 21 C 0.113 3.887 22 O -0.283 6.283 23 H 0.082 0.918 24 H 0.227 0.773 25 H 0.124 0.876 26 H 0.077 0.923 27 H 0.118 0.882 28 H 0.158 0.842 29 H 0.153 0.847 30 H 0.157 0.843 31 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 5.370 -18.882 2.963 19.853 hybrid contribution -0.552 1.247 1.030 1.709 sum 4.818 -17.635 3.994 18.712 Atomic orbital electron populations 1.69615 1.05975 1.28226 1.50264 1.25285 0.95661 0.99802 0.97118 0.85779 0.79704 0.80960 0.77783 1.19175 1.20641 1.20680 1.19753 0.93407 0.82056 1.47774 0.87815 1.41841 1.09263 1.04440 1.64079 1.19499 0.88211 0.84167 0.84987 1.90517 1.13646 1.86913 1.55523 1.22312 0.94686 0.91703 1.02752 1.71836 1.15894 1.01390 1.25251 1.23856 0.95318 0.92608 0.94286 1.19183 0.98556 0.96083 0.93695 1.20999 0.97610 0.92620 0.98045 1.20656 1.01114 0.95506 0.90838 1.98366 1.97859 1.64322 1.43915 1.20965 0.98224 0.99582 0.91801 1.21411 0.99626 0.96414 0.98992 1.18724 0.92416 0.91391 0.86138 1.84709 1.67722 1.38569 1.37287 0.91794 0.77349 0.87581 0.92270 0.88210 0.84187 0.84679 0.84297 0.73846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 3 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.30 -8.34 9.68 -14.94 -0.14 -8.49 16 8 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 9 N -0.56 -14.16 5.29 -10.97 -0.06 -14.22 16 10 C 0.45 10.64 7.85 -10.98 -0.09 10.56 16 11 O -0.58 -15.87 16.01 5.55 0.09 -15.78 16 12 C 0.02 0.33 6.87 -5.19 -0.04 0.30 16 13 N -0.44 -7.74 7.84 -60.26 -0.47 -8.21 16 14 C 0.15 2.20 10.44 -14.84 -0.16 2.05 16 15 C -0.07 -0.96 5.88 -104.91 -0.62 -1.57 16 16 C -0.07 -0.77 9.56 -39.14 -0.37 -1.14 16 17 C -0.05 -0.55 6.31 -39.56 -0.25 -0.80 16 18 Cl -0.07 -0.68 28.94 -51.86 -1.50 -2.18 16 19 C -0.09 -0.81 9.81 -39.49 -0.39 -1.20 16 20 C -0.15 -1.51 9.97 -39.49 -0.39 -1.90 16 21 C 0.16 2.11 6.72 -38.72 -0.26 1.85 16 22 O -0.47 -6.88 11.38 -18.88 -0.21 -7.09 16 23 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 24 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 25 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 26 H 0.06 0.94 7.69 -51.93 -0.40 0.54 16 27 H 0.10 1.22 7.76 -52.49 -0.41 0.81 16 28 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 31 H 0.40 5.33 9.06 45.56 0.41 5.74 16 LS Contribution 302.17 15.07 4.55 4.55 Total: -1.00 -32.14 302.17 -6.62 -38.76 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -1.92 Total: 11.73 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -2.80 Total: 0.16 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.19 Total: -45.99 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.13 Total: -22.87 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.14 -6.62 -38.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794676896.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.748 kcal (2) G-P(sol) polarization free energy of solvation -32.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds