Wall clock time and date at job start Fri Apr 10 2020 14:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 120.00006 * 2 1 4 4 H 1.48494 * 109.47303 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46776 * 300.00031 * 3 2 1 6 6 H 1.48498 * 109.47222 * 59.99714 * 3 2 1 7 7 C 1.38945 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99676 * 179.97438 * 7 2 1 9 9 N 1.37091 * 120.00085 * 359.97438 * 7 2 1 10 10 C 1.34780 * 119.99996 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00058 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00058 * 180.02562 * 10 9 7 13 13 N 1.46504 * 109.47281 * 179.97438 * 12 10 9 14 14 C 1.29436 * 119.99704 * 114.99989 * 13 12 10 15 15 C 1.47380 * 119.99701 * 180.27816 * 14 13 12 16 16 C 1.39715 * 120.18487 * 179.44562 * 15 14 13 17 17 C 1.37928 * 119.88902 * 179.74174 * 16 15 14 18 18 Cl 1.73599 * 119.86656 * 180.25805 * 17 16 15 19 19 C 1.38614 * 120.26628 * 0.53766 * 17 16 15 20 20 C 1.38103 * 120.37764 * 359.71815 * 19 17 16 21 21 C 1.38630 * 120.10779 * 0.02562 * 20 19 17 22 22 O 1.35724 * 120.13752 * 179.97438 * 21 20 19 23 23 H 0.97000 * 120.00454 * 0.02562 * 1 2 3 24 24 H 0.97000 * 120.00476 * 0.02562 * 9 7 2 25 25 H 1.09004 * 109.47065 * 59.99929 * 12 10 9 26 26 H 1.09000 * 109.47298 * 299.99612 * 12 10 9 27 27 H 1.08002 * 119.99865 * 359.97438 * 14 13 12 28 28 H 1.08000 * 120.05460 * 0.02562 * 16 15 14 29 29 H 1.07999 * 119.81113 * 179.70115 * 19 17 16 30 30 H 1.08005 * 119.94272 * 180.02562 * 20 19 17 31 31 H 0.96705 * 114.00006 * 269.98281 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8893 2.3965 1.2124 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2101 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1958 -5.9764 -0.0016 14 6 2.2562 -6.7766 1.0140 15 6 3.2182 -7.8932 1.0161 16 6 3.2948 -8.7523 2.1152 17 6 4.1936 -9.7985 2.1085 18 17 4.2836 -10.8697 3.4716 19 6 5.0293 -9.9946 1.0201 20 6 4.9666 -9.1489 -0.0699 21 6 4.0654 -8.0956 -0.0819 22 8 4.0037 -7.2637 -1.1525 23 1 -0.4851 0.8400 -0.0004 24 1 0.3533 -2.3906 -0.0005 25 1 0.6175 -4.9204 -0.8914 26 1 0.6168 -4.9209 0.8886 27 1 1.6051 -6.6231 1.8619 28 1 2.6481 -8.6002 2.9667 29 1 5.7337 -10.8133 1.0247 30 1 5.6208 -9.3084 -0.9143 31 1 4.5924 -6.4991 -1.0910 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794676896.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:18 Heat of formation + Delta-G solvation = -58.786425 kcal Electronic energy + Delta-G solvation = -18440.510910 eV Core-core repulsion = 15133.504411 eV Total energy + Delta-G solvation = -3307.006499 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.056 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.83674 -40.14653 -38.03975 -37.03795 -36.77797 -35.91963 -33.37093 -32.58482 -30.69140 -29.11678 -26.66881 -24.41167 -23.63528 -21.66616 -20.87730 -19.94305 -19.03890 -17.95215 -17.63599 -17.18554 -16.57722 -16.42836 -16.01263 -15.91974 -15.35307 -15.14096 -14.65038 -14.53457 -14.23992 -13.61709 -13.54541 -13.21946 -13.09497 -12.90626 -12.56649 -12.45401 -12.13336 -11.93187 -11.73497 -11.57103 -11.48008 -10.46474 -10.18807 -10.06877 -9.79496 -9.34879 -8.50962 -6.00670 -0.28218 0.12594 1.12732 1.34301 1.38688 1.43245 1.55413 1.96043 2.27442 2.58121 2.93507 3.15506 3.34385 3.41267 3.69662 3.94127 4.07826 4.16628 4.34087 4.39795 4.46490 4.56202 4.77717 4.95267 5.01359 5.17268 5.36962 5.37889 5.61243 5.92628 6.51468 6.79533 6.86584 7.06990 7.48002 8.02585 8.66465 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.034246 B = 0.002979 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.425674 B = 9395.382973 C = 9596.665887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.011 4.011 3 Si 0.995 3.005 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.335 4.335 8 H 0.079 0.921 9 N -0.569 5.569 10 C 0.443 3.557 11 O -0.622 6.622 12 C 0.031 3.969 13 N -0.483 5.483 14 C 0.166 3.834 15 C -0.100 4.100 16 C -0.064 4.064 17 C -0.060 4.060 18 Cl -0.062 7.062 19 C -0.073 4.073 20 C -0.144 4.144 21 C 0.140 3.860 22 O -0.488 6.488 23 H 0.279 0.721 24 H 0.398 0.602 25 H 0.118 0.882 26 H 0.086 0.914 27 H 0.126 0.874 28 H 0.159 0.841 29 H 0.163 0.837 30 H 0.158 0.842 31 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.943 -20.156 4.924 21.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.211 4.211 3 Si 0.818 3.182 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.465 4.465 8 H 0.097 0.903 9 N -0.206 5.206 10 C 0.230 3.770 11 O -0.508 6.508 12 C -0.101 4.101 13 N -0.191 5.191 14 C -0.044 4.044 15 C -0.102 4.102 16 C -0.085 4.085 17 C -0.087 4.087 18 Cl -0.033 7.033 19 C -0.093 4.093 20 C -0.163 4.163 21 C 0.092 3.908 22 O -0.300 6.300 23 H 0.089 0.911 24 H 0.232 0.768 25 H 0.136 0.864 26 H 0.104 0.896 27 H 0.143 0.857 28 H 0.177 0.823 29 H 0.181 0.819 30 H 0.175 0.825 31 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 5.475 -20.151 3.931 21.249 hybrid contribution -0.529 1.430 0.822 1.732 sum 4.946 -18.721 4.753 19.938 Atomic orbital electron populations 1.69672 1.06868 1.29429 1.49958 1.26071 0.96569 1.02471 0.96023 0.84849 0.78009 0.76902 0.78441 1.19771 1.19517 1.19406 1.19697 0.92696 0.83849 1.50207 0.90314 1.41902 1.09398 1.04544 1.64735 1.20512 0.88104 0.85605 0.82730 1.90476 1.15731 1.87872 1.56734 1.22127 0.94416 0.88968 1.04597 1.71923 1.17385 1.02546 1.27261 1.24375 0.94553 0.91594 0.93838 1.19255 0.99254 0.96774 0.94897 1.21172 0.97616 0.91976 0.97692 1.20799 1.00961 0.95483 0.91428 1.98376 1.97798 1.63808 1.43317 1.21301 0.97754 0.99447 0.90785 1.21586 0.99168 0.95555 0.99967 1.19074 0.93570 0.92047 0.86088 1.84688 1.68095 1.38909 1.38313 0.91138 0.76830 0.86413 0.89612 0.85719 0.82292 0.81942 0.82484 0.73974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.40 13.05 21.66 0.28 -49.12 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 3 Si 0.99 42.75 29.55 68.60 2.03 44.77 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.34 -19.12 9.68 84.04 0.81 -18.30 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.57 -29.47 5.29 -306.99 -1.62 -31.10 16 10 C 0.44 21.63 7.85 87.66 0.69 22.32 16 11 O -0.62 -35.12 16.01 -3.06 -0.05 -35.17 16 12 C 0.03 1.14 6.87 85.63 0.59 1.73 16 13 N -0.48 -17.11 7.84 -344.56 -2.70 -19.82 16 14 C 0.17 4.71 10.44 87.45 0.91 5.63 16 15 C -0.10 -2.50 5.88 -20.05 -0.12 -2.62 16 16 C -0.06 -1.23 9.56 22.55 0.22 -1.02 16 17 C -0.06 -1.06 6.31 22.29 0.14 -0.92 16 18 Cl -0.06 -0.98 28.94 -2.72 -0.08 -1.05 16 19 C -0.07 -1.18 9.81 22.33 0.22 -0.96 16 20 C -0.14 -2.74 9.97 22.33 0.22 -2.52 16 21 C 0.14 3.58 6.72 22.83 0.15 3.73 16 22 O -0.49 -14.60 11.38 -90.47 -1.03 -15.63 16 23 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 24 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 25 H 0.12 3.91 8.14 -2.39 -0.02 3.89 16 26 H 0.09 2.60 7.69 -2.39 -0.02 2.58 16 27 H 0.13 2.78 7.76 -2.91 -0.02 2.76 16 28 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 29 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 30 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 31 H 0.40 11.32 9.06 -74.05 -0.67 10.65 16 Total: -1.00 -70.07 302.17 0.93 -69.14 By element: Atomic # 1 Polarization: 31.24 SS G_CDS: -0.20 Total: 31.03 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 4.30 Total: 6.94 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -4.04 Total: -100.03 kcal Atomic # 8 Polarization: -49.72 SS G_CDS: -1.08 Total: -50.80 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.05 kcal Total: -70.07 0.93 -69.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794676896.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.355 kcal (2) G-P(sol) polarization free energy of solvation -70.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds