Wall clock time and date at job start Fri Apr 10 2020 14:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00073 * 2 1 4 4 H 1.48498 * 109.46804 * 270.00145 * 3 2 1 5 5 H 1.48497 * 109.46913 * 30.00149 * 3 2 1 6 6 H 1.48498 * 109.46987 * 150.00565 * 3 2 1 7 7 C 1.37879 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00351 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99924 * 179.97438 * 7 2 1 10 10 C 1.50697 * 109.47559 * 179.97438 * 9 7 2 11 11 O 1.21277 * 119.99660 * 359.97438 * 10 9 7 12 12 N 1.34772 * 120.00301 * 180.02562 * 10 9 7 13 13 C 1.39443 * 120.00094 * 185.27923 * 12 10 9 14 14 C 1.39190 * 119.91522 * 213.53767 * 13 12 10 15 15 C 1.37609 * 120.11107 * 180.02562 * 14 13 12 16 16 C 1.39794 * 119.93991 * 0.02562 * 15 14 13 17 17 C 1.47525 * 120.08641 * 180.25141 * 16 15 14 18 18 N 1.34773 * 120.00192 * 359.72700 * 17 16 15 19 19 O 1.21599 * 120.00069 * 179.72042 * 17 16 15 20 20 C 1.39869 * 119.83223 * 359.97438 * 16 15 14 21 21 Cl 1.73598 * 120.05947 * 180.02562 * 20 16 15 22 22 C 1.37867 * 119.88628 * 0.02562 * 20 16 15 23 23 H 0.96992 * 119.99633 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46952 * 59.99568 * 9 7 2 25 25 H 1.09001 * 109.47302 * 300.00331 * 9 7 2 26 26 H 0.97001 * 119.99916 * 5.27077 * 12 10 9 27 27 H 1.07994 * 119.94627 * 0.04226 * 14 13 12 28 28 H 1.08002 * 120.03626 * 180.02562 * 15 14 13 29 29 H 0.97001 * 119.99571 * 359.97438 * 18 17 16 30 30 H 0.96996 * 120.00658 * 180.02562 * 18 17 16 31 31 H 1.08001 * 119.96834 * 179.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1942 -0.0011 10 6 4.0139 -2.6149 -0.0010 11 8 3.2258 -3.5367 0.0000 12 7 5.3389 -2.8612 -0.0009 13 6 5.8047 -4.1709 -0.1119 14 6 6.9730 -4.5500 0.5428 15 6 7.4366 -5.8412 0.4356 16 6 6.7331 -6.7735 -0.3326 17 6 7.2242 -8.1601 -0.4453 18 7 8.3553 -8.5280 0.1885 19 8 6.6083 -8.9711 -1.1098 20 6 5.5594 -6.3899 -0.9895 21 17 4.6808 -7.5431 -1.9445 22 6 5.1013 -5.0944 -0.8773 23 1 -0.4849 0.8400 0.0004 24 1 3.8752 -0.6805 0.8888 25 1 3.8746 -0.6801 -0.8911 26 1 5.9686 -2.1274 0.0762 27 1 7.5165 -3.8297 1.1362 28 1 8.3430 -6.1342 0.9445 29 1 8.8467 -7.8810 0.7183 30 1 8.6784 -9.4396 0.1141 31 1 4.1954 -4.7967 -1.3843 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143201301.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:21 Heat of formation + Delta-G solvation = -76.005747 kcal Electronic energy + Delta-G solvation = -18834.291447 eV Core-core repulsion = 15526.538262 eV Total energy + Delta-G solvation = -3307.753185 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.72110 -40.65948 -39.00918 -37.49182 -35.80433 -35.05172 -34.64125 -32.18469 -31.84995 -30.49488 -26.16397 -24.33327 -24.05795 -21.86125 -21.36510 -19.40584 -19.09427 -18.65277 -17.94050 -17.41720 -16.51764 -16.36806 -16.24334 -15.86997 -15.65320 -15.49572 -15.05695 -14.57979 -14.27583 -14.20168 -13.88476 -13.51280 -12.94569 -12.80437 -12.59065 -12.40035 -12.20304 -11.85659 -11.55508 -11.40694 -10.85656 -10.78292 -10.62953 -10.62114 -9.92086 -9.28981 -8.26044 -6.36119 -0.41625 0.12761 1.09272 1.41396 1.45434 1.51377 1.56961 1.93402 2.09886 2.39412 2.54309 2.70260 3.07822 3.63870 3.87550 3.95825 4.07389 4.24377 4.27229 4.62727 4.68780 4.91940 5.01301 5.02734 5.13283 5.25089 5.46364 5.73687 5.93938 6.20153 6.47391 6.52134 6.80695 7.19850 7.31883 7.36183 8.91610 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.033988 B = 0.003811 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.621745 B = 7345.253128 C = 8010.116787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.264 1.264 5 H -0.289 1.289 6 H -0.220 1.220 7 C -0.539 4.539 8 H 0.027 0.973 9 C -0.025 4.025 10 C 0.520 3.480 11 O -0.555 6.555 12 N -0.663 5.663 13 C 0.187 3.813 14 C -0.138 4.138 15 C -0.030 4.030 16 C -0.174 4.174 17 C 0.558 3.442 18 N -0.825 5.825 19 O -0.568 6.568 20 C 0.018 3.982 21 Cl -0.057 7.057 22 C -0.157 4.157 23 H 0.268 0.732 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.435 0.565 27 H 0.186 0.814 28 H 0.193 0.807 29 H 0.418 0.582 30 H 0.414 0.586 31 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.698 -7.758 3.246 27.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.197 4.197 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.142 1.142 7 C -0.577 4.577 8 H 0.045 0.955 9 C -0.064 4.064 10 C 0.310 3.690 11 O -0.431 6.431 12 N -0.310 5.310 13 C 0.090 3.910 14 C -0.158 4.158 15 C -0.049 4.049 16 C -0.179 4.179 17 C 0.343 3.657 18 N -0.391 5.391 19 O -0.448 6.448 20 C -0.010 4.010 21 Cl -0.028 7.028 22 C -0.179 4.179 23 H 0.077 0.923 24 H 0.100 0.900 25 H 0.095 0.905 26 H 0.276 0.724 27 H 0.203 0.797 28 H 0.210 0.790 29 H 0.250 0.750 30 H 0.246 0.754 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 25.359 -8.719 2.704 26.952 hybrid contribution -0.610 0.615 -0.223 0.895 sum 24.749 -8.104 2.481 26.160 Atomic orbital electron populations 1.70105 1.09021 1.28487 1.51884 1.26192 0.95774 1.04114 0.93574 0.85517 0.80086 0.76496 0.79552 1.18878 1.21555 1.14217 1.21170 0.91068 0.93708 1.51757 0.95463 1.19644 0.95687 0.89666 1.01449 1.21569 0.81222 0.93168 0.73014 1.90649 1.56634 1.47889 1.47928 1.43590 1.07680 1.07147 1.72630 1.18125 0.94502 0.85130 0.93253 1.21390 0.95974 0.98200 1.00261 1.21531 0.98954 0.90736 0.93716 1.19818 0.97004 0.95922 1.05152 1.18114 0.81463 0.87013 0.79085 1.43466 1.25606 1.17304 1.52762 1.90911 1.58016 1.53932 1.41903 1.20929 0.93777 0.90348 0.95987 1.98392 1.75221 1.59144 1.70013 1.20937 1.02259 0.92617 1.02086 0.92330 0.89956 0.90492 0.72384 0.79661 0.78975 0.74953 0.75353 0.86757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.50 13.96 21.45 0.30 -60.20 16 2 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 3 Si 0.96 39.96 27.47 68.60 1.88 41.84 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.22 -7.46 6.54 99.48 0.65 -6.80 16 7 C -0.54 -31.22 9.48 25.60 0.24 -30.98 16 8 H 0.03 1.88 7.00 -2.91 -0.02 1.86 16 9 C -0.02 -1.04 4.53 29.10 0.13 -0.90 16 10 C 0.52 20.77 7.55 87.66 0.66 21.43 16 11 O -0.56 -28.40 13.14 -3.02 -0.04 -28.44 16 12 N -0.66 -17.52 5.32 -303.52 -1.61 -19.13 16 13 C 0.19 4.85 6.27 38.35 0.24 5.09 16 14 C -0.14 -2.05 9.94 22.35 0.22 -1.83 16 15 C -0.03 -0.39 9.53 22.50 0.21 -0.18 16 16 C -0.17 -3.95 5.88 -20.06 -0.12 -4.06 16 17 C 0.56 12.36 8.03 86.69 0.70 13.06 16 18 N -0.83 -8.23 8.82 -175.82 -1.55 -9.78 16 19 O -0.57 -17.97 14.79 -4.03 -0.06 -18.03 16 20 C 0.02 0.57 6.35 22.58 0.14 0.71 16 21 Cl -0.06 -1.99 26.01 -2.72 -0.07 -2.06 16 22 C -0.16 -5.28 8.41 22.38 0.19 -5.09 16 23 H 0.27 15.66 8.31 -92.71 -0.77 14.88 16 24 H 0.08 2.95 7.20 -2.38 -0.02 2.94 16 25 H 0.08 2.80 7.57 -2.39 -0.02 2.79 16 26 H 0.44 7.05 8.81 -92.71 -0.82 6.24 16 27 H 0.19 1.07 8.06 -2.91 -0.02 1.05 16 28 H 0.19 0.24 6.39 -2.91 -0.02 0.22 16 29 H 0.42 0.76 6.85 -92.71 -0.63 0.13 16 30 H 0.41 3.19 8.93 -92.71 -0.83 2.36 16 31 H 0.11 4.73 6.41 -2.91 -0.02 4.72 16 Total: -1.00 -89.80 287.22 0.83 -88.97 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -1.10 Total: 9.13 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: 3.09 Total: -2.30 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -2.87 Total: -89.11 kcal Atomic # 8 Polarization: -46.37 SS G_CDS: -0.10 Total: -46.47 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 1.88 Total: 41.84 kcal Atomic # 17 Polarization: -1.99 SS G_CDS: -0.07 Total: -2.06 kcal Total: -89.80 0.83 -88.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143201301.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.960 kcal (2) G-P(sol) polarization free energy of solvation -89.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds