Wall clock time and date at job start Fri Apr 10 2020 14:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30761 * 1 3 3 Si 1.86802 * 119.99889 * 2 1 4 4 H 1.48503 * 109.46650 * 264.89278 * 3 2 1 5 5 H 1.48493 * 109.47322 * 24.89383 * 3 2 1 6 6 H 1.48497 * 109.46978 * 144.89713 * 3 2 1 7 7 C 1.40063 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00332 * 349.63874 * 7 2 1 9 9 C 1.40535 * 119.99643 * 169.63994 * 7 2 1 10 10 N 1.34115 * 120.59821 * 347.89720 * 9 7 2 11 11 C 1.31524 * 119.87058 * 179.97438 * 10 9 7 12 12 C 1.39050 * 121.19420 * 0.26987 * 11 10 9 13 13 N 1.31841 * 121.25499 * 359.42252 * 12 11 10 14 14 C 1.33260 * 120.01023 * 0.57635 * 13 12 11 15 15 C 1.47077 * 120.57184 * 179.69242 * 14 13 12 16 16 C 1.34098 * 123.04495 * 131.61511 * 15 14 13 17 17 S 1.70027 * 112.22037 * 179.88296 * 16 15 14 18 18 C 1.75806 * 93.00881 * 0.32725 * 17 16 15 19 19 C 1.39786 * 130.50267 * 179.76021 * 18 17 16 20 20 C 1.37560 * 120.31179 * 180.02562 * 19 18 17 21 21 C 1.38732 * 120.21299 * 359.97438 * 20 19 18 22 22 C 1.37319 * 120.34261 * 0.02562 * 21 20 19 23 23 C 1.39492 * 109.79585 * 359.81972 * 18 17 16 24 24 H 0.96998 * 120.00042 * 0.02562 * 1 2 3 25 25 H 1.08003 * 119.40248 * 180.02562 * 11 10 9 26 26 H 1.07995 * 119.37142 * 179.72696 * 12 11 10 27 27 H 1.08001 * 123.89292 * 359.97438 * 16 15 14 28 28 H 1.08004 * 119.84247 * 0.02562 * 19 18 17 29 29 H 1.08001 * 119.89201 * 179.97438 * 20 19 18 30 30 H 1.08005 * 119.82909 * 180.02562 * 21 20 19 31 31 H 1.07999 * 119.86875 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6178 0.0000 4 1 2.5970 1.9841 -1.3946 5 1 1.3893 2.6814 0.5893 6 1 3.4810 1.4737 0.8051 7 6 2.0079 -1.2130 0.0005 8 1 1.4812 -2.1406 0.1692 9 6 3.3961 -1.2229 -0.2183 10 7 4.0247 -0.1255 -0.6647 11 6 5.3245 -0.1507 -0.8641 12 6 6.0676 -1.3015 -0.6257 13 7 5.4975 -2.4039 -0.1808 14 6 4.1833 -2.4332 0.0379 15 6 3.5336 -3.6584 0.5277 16 6 2.6766 -3.6695 1.5591 17 16 2.0881 -5.2300 1.8893 18 6 3.0275 -5.9589 0.5943 19 6 3.1177 -7.2897 0.1762 20 6 3.9319 -7.6325 -0.8782 21 6 4.6700 -6.6590 -1.5356 22 6 4.5948 -5.3462 -1.1397 23 6 3.7685 -4.9764 -0.0625 24 1 -0.4850 0.8400 -0.0004 25 1 5.8230 0.7375 -1.2234 26 1 7.1327 -1.2906 -0.8036 27 1 2.3919 -2.7884 2.1150 28 1 2.5453 -8.0524 0.6834 29 1 3.9968 -8.6629 -1.1953 30 1 5.3070 -6.9350 -2.3629 31 1 5.1731 -4.5947 -1.6567 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238886604.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:56 Heat of formation + Delta-G solvation = 51.865282 kcal Electronic energy + Delta-G solvation = -18653.899739 eV Core-core repulsion = 15796.877178 eV Total energy + Delta-G solvation = -2857.022561 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.12073 -40.11234 -36.51294 -36.11779 -34.40830 -32.41162 -31.69310 -30.02639 -28.34151 -25.67586 -24.18255 -23.57052 -23.32700 -21.03156 -19.86133 -19.03118 -18.10106 -17.31543 -17.04205 -16.29186 -16.11985 -15.85991 -15.42110 -15.19494 -14.79257 -14.55283 -14.44327 -14.03699 -13.62325 -13.45878 -13.12225 -12.96988 -12.74072 -12.60621 -12.18408 -12.05889 -11.66477 -11.58893 -11.48928 -11.10648 -10.55316 -9.85932 -9.53183 -9.40666 -9.08018 -8.42357 -6.85435 -0.24602 0.22529 0.36100 0.67363 0.68054 1.11087 1.37160 1.47458 1.49914 1.58797 2.31303 2.48762 2.83819 3.40676 3.63402 3.75443 3.91409 4.03205 4.13919 4.16933 4.44827 4.45879 4.54664 4.64184 4.72917 4.83954 4.93777 5.06918 5.12009 5.28484 5.41691 5.52148 5.63977 5.67655 5.86097 6.02851 6.28968 6.33695 7.00839 7.47090 7.82787 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.020077 B = 0.006622 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.302100 B = 4227.614670 C = 5163.178390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.053 3.947 3 Si 1.045 2.955 4 H -0.276 1.276 5 H -0.309 1.309 6 H -0.279 1.279 7 C -0.397 4.397 8 H 0.092 0.908 9 C 0.192 3.808 10 N -0.565 5.565 11 C 0.103 3.897 12 C -0.113 4.113 13 N -0.413 5.413 14 C -0.003 4.003 15 C -0.018 4.018 16 C -0.233 4.233 17 S 0.168 5.832 18 C -0.172 4.172 19 C -0.087 4.087 20 C -0.100 4.100 21 C -0.119 4.119 22 C -0.089 4.089 23 C -0.080 4.080 24 H 0.306 0.694 25 H 0.177 0.823 26 H 0.173 0.827 27 H 0.155 0.845 28 H 0.155 0.845 29 H 0.170 0.830 30 H 0.154 0.846 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.841 -10.137 -0.111 11.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.171 4.171 3 Si 0.877 3.123 4 H -0.203 1.203 5 H -0.240 1.240 6 H -0.206 1.206 7 C -0.428 4.428 8 H 0.110 0.890 9 C 0.067 3.933 10 N -0.287 5.287 11 C -0.062 4.062 12 C -0.272 4.272 13 N -0.124 5.124 14 C -0.154 4.154 15 C -0.032 4.032 16 C -0.369 4.369 17 S 0.435 5.565 18 C -0.287 4.287 19 C -0.110 4.110 20 C -0.120 4.120 21 C -0.139 4.139 22 C -0.109 4.109 23 C -0.088 4.088 24 H 0.117 0.883 25 H 0.194 0.806 26 H 0.190 0.810 27 H 0.173 0.827 28 H 0.173 0.827 29 H 0.188 0.812 30 H 0.172 0.828 31 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.542 -10.553 1.008 11.177 hybrid contribution 1.074 1.963 -1.050 2.471 sum 4.617 -8.590 -0.042 9.752 Atomic orbital electron populations 1.69593 1.09126 1.32997 1.30208 1.27026 0.95545 1.05378 0.89106 0.83897 0.75687 0.73304 0.79420 1.20280 1.23972 1.20645 1.19538 0.90070 0.96205 1.36976 0.89033 1.20465 0.94160 0.88274 0.90386 1.67608 1.11261 1.27834 1.21983 1.23728 0.90166 0.99451 0.92834 1.23048 1.01529 0.90494 1.12097 1.67958 1.10026 1.27920 1.06531 1.20890 0.89722 0.93715 1.11027 1.18056 0.98439 0.90912 0.95826 1.24741 1.04896 1.03948 1.03281 1.82131 1.46768 0.94973 1.32629 1.23057 1.04096 0.98754 1.02808 1.20855 1.00061 0.92044 0.98030 1.21451 0.95126 1.00952 0.94516 1.21316 1.00309 0.91401 1.00885 1.21000 0.97205 0.97565 0.95160 1.19245 0.99887 0.91109 0.98516 0.88295 0.80646 0.80998 0.82708 0.82733 0.81211 0.82819 0.87530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.75 13.92 21.85 0.30 -40.44 16 2 C 0.05 2.74 5.52 85.30 0.47 3.21 16 3 Si 1.05 47.72 25.47 68.60 1.75 49.46 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.31 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.28 -13.36 6.58 99.48 0.65 -12.70 16 7 C -0.40 -21.47 8.50 23.27 0.20 -21.27 16 8 H 0.09 5.14 6.17 -2.91 -0.02 5.13 16 9 C 0.19 10.07 6.40 41.55 0.27 10.34 16 10 N -0.56 -27.96 5.16 -184.09 -0.95 -28.91 16 11 C 0.10 4.29 11.17 84.93 0.95 5.23 16 12 C -0.11 -4.60 11.17 84.89 0.95 -3.65 16 13 N -0.41 -19.15 9.98 -178.97 -1.79 -20.94 16 14 C 0.00 -0.14 6.52 43.44 0.28 0.14 16 15 C -0.02 -0.83 5.27 -19.80 -0.10 -0.94 16 16 C -0.23 -9.84 8.58 66.88 0.57 -9.26 16 17 S 0.17 5.59 22.98 -56.49 -1.30 4.29 16 18 C -0.17 -5.87 6.46 22.95 0.15 -5.72 16 19 C -0.09 -2.24 10.06 22.48 0.23 -2.01 16 20 C -0.10 -2.21 10.03 22.23 0.22 -1.98 16 21 C -0.12 -3.13 10.01 22.17 0.22 -2.91 16 22 C -0.09 -3.21 9.80 22.66 0.22 -2.99 16 23 C -0.08 -3.21 6.03 -20.27 -0.12 -3.33 16 24 H 0.31 13.98 8.29 -92.71 -0.77 13.21 16 25 H 0.18 5.67 8.06 -2.91 -0.02 5.65 16 26 H 0.17 5.54 8.06 -2.91 -0.02 5.52 16 27 H 0.16 6.82 7.52 -2.91 -0.02 6.80 16 28 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 29 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 30 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 31 H 0.11 4.12 7.68 -2.91 -0.02 4.10 16 Total: -1.00 -63.99 283.78 3.64 -60.35 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 1.12 Total: 11.33 kcal Atomic # 6 Polarization: -39.65 SS G_CDS: 4.50 Total: -35.15 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -2.43 Total: -90.29 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 1.75 Total: 49.46 kcal Atomic # 16 Polarization: 5.59 SS G_CDS: -1.30 Total: 4.29 kcal Total: -63.99 3.64 -60.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238886604.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.218 kcal (2) G-P(sol) polarization free energy of solvation -63.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds