Wall clock time and date at job start Fri Apr 10 2020 14:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86803 * 119.99961 * 2 1 4 4 H 1.48493 * 109.47359 * 274.45254 * 3 2 1 5 5 H 1.48504 * 109.47079 * 34.45870 * 3 2 1 6 6 H 1.48510 * 109.46697 * 154.45559 * 3 2 1 7 7 C 1.40037 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99794 * 162.18346 * 7 2 1 9 9 C 1.41304 * 119.99559 * 342.45652 * 7 2 1 10 10 C 1.40859 * 120.14926 * 334.23995 * 9 7 2 11 11 N 1.31870 * 119.98250 * 179.79455 * 10 9 7 12 12 C 1.32182 * 120.29576 * 0.46292 * 11 10 9 13 13 C 1.40092 * 120.28861 * 359.76801 * 12 11 10 14 14 C 1.48118 * 119.98959 * 179.97438 * 13 12 11 15 15 C 1.38781 * 119.98367 * 356.89145 * 14 13 12 16 16 C 1.38493 * 120.04222 * 180.02562 * 15 14 13 17 17 C 1.37275 * 120.61335 * 359.97438 * 16 15 14 18 18 C 1.41185 * 120.62547 * 0.02562 * 17 16 15 19 19 C 1.45431 * 129.25545 * 179.97438 * 18 17 16 20 20 C 1.31803 * 114.89560 * 180.02562 * 19 18 17 21 21 S 1.75300 * 111.38731 * 359.97438 * 20 19 18 22 22 C 1.39649 * 118.91800 * 359.70362 * 18 17 16 23 23 N 1.32615 * 120.01297 * 0.02562 * 13 12 11 24 24 H 0.97009 * 119.99784 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00436 * 0.02648 * 10 9 7 26 26 H 1.08001 * 119.85225 * 179.74687 * 12 11 10 27 27 H 1.07996 * 119.98152 * 0.02562 * 15 14 13 28 28 H 1.07998 * 119.69215 * 179.97438 * 16 15 14 29 29 H 1.07995 * 119.68939 * 179.97438 * 17 16 15 30 30 H 1.07994 * 122.55551 * 0.03840 * 19 18 17 31 31 H 1.08004 * 124.30928 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3948 2.1008 -1.3958 5 1 1.4891 2.6237 0.7922 6 1 3.5830 1.4147 0.6038 7 6 2.0076 -1.2127 -0.0005 8 1 3.0487 -1.2350 -0.2867 9 6 1.3503 -2.4081 0.3678 10 6 0.2315 -2.3658 1.2226 11 7 -0.3819 -3.4831 1.5610 12 6 0.0537 -4.6462 1.1088 13 6 1.1683 -4.7026 0.2619 14 6 1.6511 -6.0096 -0.2404 15 6 1.0396 -7.1827 0.1791 16 6 1.4904 -8.4055 -0.2894 17 6 2.5414 -8.4724 -1.1700 18 6 3.1833 -7.2961 -1.6144 19 6 4.3009 -7.1486 -2.5333 20 6 4.6788 -5.9050 -2.7523 21 16 3.6959 -4.7696 -1.8479 22 6 2.7277 -6.0609 -1.1486 23 7 1.7917 -3.5860 -0.0892 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1261 -1.4183 1.5976 26 1 -0.4516 -5.5572 1.3938 27 1 0.2116 -7.1420 0.8713 28 1 1.0107 -9.3149 0.0411 29 1 2.8811 -9.4340 -1.5254 30 1 4.7842 -7.9936 -3.0009 31 1 5.4901 -5.6215 -3.4063 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241401170.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:36 Heat of formation + Delta-G solvation = 75.008737 kcal Electronic energy + Delta-G solvation = -18347.445793 eV Core-core repulsion = 15491.426808 eV Total energy + Delta-G solvation = -2856.018985 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.56811 -38.59834 -35.00814 -34.17258 -32.86439 -31.43202 -29.12719 -28.71965 -26.22311 -23.73325 -23.32451 -21.98039 -21.17305 -19.96272 -17.90717 -17.16004 -16.18935 -15.60511 -15.37014 -15.03339 -14.82336 -14.46545 -13.80110 -13.67997 -13.27313 -13.02232 -12.86540 -12.12732 -11.80503 -11.67605 -11.39192 -11.17266 -11.09397 -10.98372 -10.86727 -10.47907 -10.14261 -9.97824 -9.70855 -9.60822 -8.99561 -8.24836 -7.89195 -7.48510 -7.12338 -7.00492 -4.78724 0.96239 1.40711 2.13213 2.31221 2.58207 2.68397 2.95546 2.97392 2.99689 3.06081 3.73600 4.06220 4.43047 4.86927 4.93520 5.13372 5.41579 5.47513 5.54849 5.59640 5.83183 5.91863 5.98809 6.18986 6.21962 6.30976 6.32664 6.64252 6.70338 6.76750 6.85949 6.97281 7.11874 7.18591 7.51635 8.06686 8.34038 8.40660 9.03685 9.50818 9.86882 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.021291 B = 0.005795 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.818669 B = 4830.458935 C = 6059.667276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.076 3.924 3 Si 0.924 3.076 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.256 1.256 7 C -0.420 4.420 8 H 0.093 0.907 9 C 0.232 3.768 10 C 0.018 3.982 11 N -0.442 5.442 12 C -0.082 4.082 13 C 0.122 3.878 14 C 0.018 3.982 15 C -0.100 4.100 16 C -0.123 4.123 17 C -0.089 4.089 18 C -0.086 4.086 19 C -0.134 4.134 20 C -0.237 4.237 21 S 0.198 5.802 22 C -0.123 4.123 23 N -0.519 5.519 24 H 0.290 0.710 25 H 0.160 0.840 26 H 0.133 0.867 27 H 0.133 0.867 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.132 0.868 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.073 -8.696 -2.829 10.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.747 3.253 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.180 1.180 7 C -0.454 4.454 8 H 0.111 0.889 9 C 0.103 3.897 10 C -0.153 4.153 11 N -0.154 5.154 12 C -0.238 4.238 13 C -0.020 4.020 14 C 0.012 3.988 15 C -0.122 4.122 16 C -0.143 4.143 17 C -0.109 4.109 18 C -0.095 4.095 19 C -0.165 4.165 20 C -0.371 4.371 21 S 0.464 5.536 22 C -0.240 4.240 23 N -0.238 5.238 24 H 0.101 0.899 25 H 0.177 0.823 26 H 0.150 0.850 27 H 0.150 0.850 28 H 0.143 0.857 29 H 0.138 0.862 30 H 0.150 0.850 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.928 -6.949 -2.767 8.958 hybrid contribution 0.201 -0.861 -0.268 0.924 sum 5.130 -7.810 -3.035 9.825 Atomic orbital electron populations 1.69733 1.07876 1.30506 1.32579 1.26044 0.94866 1.02020 0.91651 0.86033 0.80639 0.79211 0.79448 1.19144 1.19649 1.17953 1.19359 0.98565 0.89057 1.38397 0.88913 1.19281 0.90805 0.90642 0.88954 1.23853 0.97078 0.95905 0.98508 1.67904 1.28161 0.98670 1.20655 1.22623 0.99562 0.96096 1.05538 1.20355 0.94115 0.91811 0.95734 1.18106 0.93503 0.92169 0.95041 1.21113 0.99871 0.91003 1.00177 1.20747 0.97533 0.97459 0.98558 1.20864 0.96033 0.96241 0.97773 1.19285 0.97587 0.92867 0.99720 1.20723 0.97836 0.97314 1.00631 1.25766 1.05954 0.99052 1.06354 1.85435 1.24471 1.03741 1.39914 1.22868 1.01261 0.97079 1.02752 1.68546 1.32551 0.97768 1.24976 0.89900 0.82338 0.84962 0.84976 0.85682 0.86168 0.84975 0.82461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.91 11.01 55.55 0.61 -18.29 16 2 C 0.08 1.77 5.13 -17.34 -0.09 1.68 16 3 Si 0.92 17.36 29.59 -169.99 -5.03 12.33 16 4 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 5 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 6 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 7 C -0.42 -10.69 9.28 -37.74 -0.35 -11.04 16 8 H 0.09 2.30 7.91 -52.49 -0.42 1.89 16 9 C 0.23 6.18 6.40 -84.84 -0.54 5.63 16 10 C 0.02 0.47 9.87 -16.54 -0.16 0.30 16 11 N -0.44 -11.23 10.47 -12.03 -0.13 -11.35 16 12 C -0.08 -1.90 10.61 -16.71 -0.18 -2.08 16 13 C 0.12 2.89 6.73 -82.78 -0.56 2.33 16 14 C 0.02 0.36 5.90 -104.62 -0.62 -0.26 16 15 C -0.10 -1.64 9.41 -39.29 -0.37 -2.01 16 16 C -0.12 -1.69 9.98 -39.84 -0.40 -2.08 16 17 C -0.09 -1.25 10.08 -38.81 -0.39 -1.64 16 18 C -0.09 -1.42 6.04 -105.39 -0.64 -2.06 16 19 C -0.13 -1.94 10.39 -38.61 -0.40 -2.35 16 20 C -0.24 -3.51 11.02 28.84 0.32 -3.20 16 21 S 0.20 3.74 21.10 -107.50 -2.27 1.48 16 22 C -0.12 -2.40 6.32 -38.03 -0.24 -2.64 16 23 N -0.52 -13.30 8.02 -7.52 -0.06 -13.36 16 24 H 0.29 6.27 8.29 -40.82 -0.34 5.93 16 25 H 0.16 4.14 6.23 -52.49 -0.33 3.82 16 26 H 0.13 2.60 6.18 -52.49 -0.32 2.28 16 27 H 0.13 1.93 6.16 -52.49 -0.32 1.61 16 28 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.16 1.85 8.06 -52.48 -0.42 1.42 16 LS Contribution 285.68 15.07 4.31 4.31 Total: -1.00 -28.64 285.68 -9.40 -38.04 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -2.22 Total: 6.26 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -4.62 Total: -19.41 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.43 Total: -43.01 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Atomic # 16 Polarization: 3.74 SS G_CDS: -2.27 Total: 1.48 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.64 -9.40 -38.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241401170.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.051 kcal (2) G-P(sol) polarization free energy of solvation -28.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds