Wall clock time and date at job start Fri Apr 10 2020 14:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86803 * 119.99961 * 2 1 4 4 H 1.48493 * 109.47359 * 274.45254 * 3 2 1 5 5 H 1.48504 * 109.47079 * 34.45870 * 3 2 1 6 6 H 1.48510 * 109.46697 * 154.45559 * 3 2 1 7 7 C 1.40037 * 120.00071 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99794 * 162.18346 * 7 2 1 9 9 C 1.41304 * 119.99559 * 342.45652 * 7 2 1 10 10 C 1.40859 * 120.14926 * 334.23995 * 9 7 2 11 11 N 1.31870 * 119.98250 * 179.79455 * 10 9 7 12 12 C 1.32182 * 120.29576 * 0.46292 * 11 10 9 13 13 C 1.40092 * 120.28861 * 359.76801 * 12 11 10 14 14 C 1.48118 * 119.98959 * 179.97438 * 13 12 11 15 15 C 1.38781 * 119.98367 * 356.89145 * 14 13 12 16 16 C 1.38493 * 120.04222 * 180.02562 * 15 14 13 17 17 C 1.37275 * 120.61335 * 359.97438 * 16 15 14 18 18 C 1.41185 * 120.62547 * 0.02562 * 17 16 15 19 19 C 1.45431 * 129.25545 * 179.97438 * 18 17 16 20 20 C 1.31803 * 114.89560 * 180.02562 * 19 18 17 21 21 S 1.75300 * 111.38731 * 359.97438 * 20 19 18 22 22 C 1.39649 * 118.91800 * 359.70362 * 18 17 16 23 23 N 1.32615 * 120.01297 * 0.02562 * 13 12 11 24 24 H 0.97009 * 119.99784 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.00436 * 0.02648 * 10 9 7 26 26 H 1.08001 * 119.85225 * 179.74687 * 12 11 10 27 27 H 1.07996 * 119.98152 * 0.02562 * 15 14 13 28 28 H 1.07998 * 119.69215 * 179.97438 * 16 15 14 29 29 H 1.07995 * 119.68939 * 179.97438 * 17 16 15 30 30 H 1.07994 * 122.55551 * 0.03840 * 19 18 17 31 31 H 1.08004 * 124.30928 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.3948 2.1008 -1.3958 5 1 1.4891 2.6237 0.7922 6 1 3.5830 1.4147 0.6038 7 6 2.0076 -1.2127 -0.0005 8 1 3.0487 -1.2350 -0.2867 9 6 1.3503 -2.4081 0.3678 10 6 0.2315 -2.3658 1.2226 11 7 -0.3819 -3.4831 1.5610 12 6 0.0537 -4.6462 1.1088 13 6 1.1683 -4.7026 0.2619 14 6 1.6511 -6.0096 -0.2404 15 6 1.0396 -7.1827 0.1791 16 6 1.4904 -8.4055 -0.2894 17 6 2.5414 -8.4724 -1.1700 18 6 3.1833 -7.2961 -1.6144 19 6 4.3009 -7.1486 -2.5333 20 6 4.6788 -5.9050 -2.7523 21 16 3.6959 -4.7696 -1.8479 22 6 2.7277 -6.0609 -1.1486 23 7 1.7917 -3.5860 -0.0892 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1261 -1.4183 1.5976 26 1 -0.4516 -5.5572 1.3938 27 1 0.2116 -7.1420 0.8713 28 1 1.0107 -9.3149 0.0411 29 1 2.8811 -9.4340 -1.5254 30 1 4.7842 -7.9936 -3.0009 31 1 5.4901 -5.6215 -3.4063 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241401170.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:36 Heat of formation + Delta-G solvation = 58.678448 kcal Electronic energy + Delta-G solvation = -18348.153927 eV Core-core repulsion = 15491.426808 eV Total energy + Delta-G solvation = -2856.727120 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.22076 -40.04796 -36.39851 -35.86464 -34.62359 -33.03509 -30.50734 -30.21172 -28.04913 -25.33694 -24.71725 -23.66449 -22.65031 -21.24868 -19.59267 -18.61838 -17.94608 -17.27371 -16.98713 -16.43195 -16.28965 -15.77582 -15.31751 -15.24708 -14.55576 -14.44679 -14.40419 -13.60396 -13.30995 -13.21085 -13.08688 -12.80869 -12.52555 -12.27142 -12.25861 -12.00044 -11.82744 -11.74251 -11.25142 -11.16007 -10.57251 -9.72586 -9.40956 -9.34034 -8.91603 -8.45620 -6.71732 -0.37427 0.06298 0.68438 0.81478 0.97338 1.37810 1.42169 1.45877 1.54491 1.57514 2.14892 2.54429 2.85463 3.41171 3.66044 3.75882 3.90000 4.00232 4.22839 4.28204 4.46832 4.52397 4.60015 4.72816 4.86763 4.92990 5.03650 5.08371 5.14588 5.24087 5.48677 5.52230 5.59515 5.66307 5.97919 6.12325 6.46549 6.50616 7.13262 7.61164 8.10889 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.021291 B = 0.005795 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.818669 B = 4830.458935 C = 6059.667276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.041 3.959 3 Si 1.000 3.000 4 H -0.259 1.259 5 H -0.257 1.257 6 H -0.256 1.256 7 C -0.447 4.447 8 H 0.086 0.914 9 C 0.204 3.796 10 C -0.018 4.018 11 N -0.451 5.451 12 C -0.095 4.095 13 C 0.121 3.879 14 C -0.033 4.033 15 C -0.089 4.089 16 C -0.117 4.117 17 C -0.069 4.069 18 C -0.100 4.100 19 C -0.123 4.123 20 C -0.225 4.225 21 S 0.100 5.900 22 C -0.142 4.142 23 N -0.533 5.533 24 H 0.301 0.699 25 H 0.150 0.850 26 H 0.168 0.832 27 H 0.147 0.853 28 H 0.173 0.827 29 H 0.167 0.833 30 H 0.177 0.823 31 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.019 -11.649 -3.711 13.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.178 4.178 3 Si 0.819 3.181 4 H -0.183 1.183 5 H -0.181 1.181 6 H -0.179 1.179 7 C -0.480 4.480 8 H 0.104 0.896 9 C 0.077 3.923 10 C -0.188 4.188 11 N -0.163 5.163 12 C -0.253 4.253 13 C -0.023 4.023 14 C -0.039 4.039 15 C -0.110 4.110 16 C -0.137 4.137 17 C -0.089 4.089 18 C -0.109 4.109 19 C -0.153 4.153 20 C -0.359 4.359 21 S 0.365 5.635 22 C -0.259 4.259 23 N -0.253 5.253 24 H 0.112 0.888 25 H 0.167 0.833 26 H 0.185 0.815 27 H 0.165 0.835 28 H 0.190 0.810 29 H 0.184 0.816 30 H 0.194 0.806 31 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 5.860 -9.897 -3.647 12.066 hybrid contribution -0.085 -0.268 -0.066 0.289 sum 5.775 -10.165 -3.713 12.267 Atomic orbital electron populations 1.69763 1.09381 1.32166 1.32100 1.26976 0.95577 1.04979 0.90305 0.84923 0.79037 0.74338 0.79835 1.18314 1.18061 1.17944 1.19596 0.98531 0.90180 1.39720 0.89579 1.19640 0.91455 0.91695 0.89535 1.23642 0.98536 0.96032 1.00561 1.67842 1.28368 0.99193 1.20863 1.23171 0.99950 0.96520 1.05622 1.21040 0.93584 0.92974 0.94679 1.18214 0.96034 0.91632 0.98009 1.21459 0.99355 0.90875 0.99344 1.21268 0.97112 0.97792 0.97478 1.21467 0.94546 0.97050 0.95827 1.19818 0.98380 0.92609 1.00099 1.21155 0.96588 0.98287 0.99238 1.25884 1.06014 0.97788 1.06245 1.85641 1.27453 1.07607 1.42797 1.23019 1.01560 0.97858 1.03461 1.68721 1.33069 0.98145 1.25348 0.88755 0.83294 0.81495 0.83495 0.80990 0.81561 0.80569 0.79389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.78 11.01 21.84 0.24 -40.54 16 2 C 0.04 1.98 5.13 85.29 0.44 2.42 16 3 Si 1.00 36.31 29.59 68.60 2.03 38.34 16 4 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 5 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 6 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 7 C -0.45 -24.27 9.28 23.46 0.22 -24.05 16 8 H 0.09 4.60 7.91 -2.91 -0.02 4.58 16 9 C 0.20 11.66 6.40 40.23 0.26 11.92 16 10 C -0.02 -1.04 9.87 85.33 0.84 -0.20 16 11 N -0.45 -23.94 10.47 -191.98 -2.01 -25.95 16 12 C -0.10 -4.56 10.61 85.09 0.90 -3.66 16 13 C 0.12 5.95 6.73 42.10 0.28 6.24 16 14 C -0.03 -1.34 5.90 -19.86 -0.12 -1.46 16 15 C -0.09 -2.71 9.41 22.46 0.21 -2.50 16 16 C -0.12 -2.62 9.98 22.10 0.22 -2.40 16 17 C -0.07 -1.57 10.08 22.77 0.23 -1.34 16 18 C -0.10 -3.03 6.04 -20.36 -0.12 -3.15 16 19 C -0.12 -3.12 10.39 23.35 0.24 -2.88 16 20 C -0.23 -6.33 11.02 67.05 0.74 -5.59 16 21 S 0.10 3.94 21.10 -56.49 -1.19 2.75 16 22 C -0.14 -5.57 6.32 23.27 0.15 -5.42 16 23 N -0.53 -29.11 8.02 -177.71 -1.43 -30.54 16 24 H 0.30 13.38 8.29 -92.70 -0.77 12.61 16 25 H 0.15 8.39 6.23 -2.91 -0.02 8.37 16 26 H 0.17 6.49 6.18 -2.91 -0.02 6.48 16 27 H 0.15 3.90 6.16 -2.91 -0.02 3.88 16 28 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 29 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 30 H 0.18 2.93 8.06 -2.91 -0.02 2.91 16 31 H 0.19 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -68.75 285.68 3.32 -65.44 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 1.18 Total: 22.59 kcal Atomic # 6 Polarization: -36.57 SS G_CDS: 4.49 Total: -32.08 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -3.20 Total: -97.03 kcal Atomic # 14 Polarization: 36.31 SS G_CDS: 2.03 Total: 38.34 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -1.19 Total: 2.75 kcal Total: -68.75 3.32 -65.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241401170.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.117 kcal (2) G-P(sol) polarization free energy of solvation -68.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds