Wall clock time and date at job start Fri Apr 10 2020 14:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86800 * 119.99967 * 2 1 4 4 H 1.48502 * 109.47498 * 240.00100 * 3 2 1 5 5 H 1.48501 * 109.47194 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47242 * 120.00222 * 3 2 1 7 7 C 1.40092 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00193 * 180.02562 * 7 2 1 9 9 C 1.40907 * 120.00187 * 359.97438 * 7 2 1 10 10 N 1.33714 * 119.12268 * 180.02562 * 9 7 2 11 11 C 1.31534 * 120.83659 * 180.02562 * 10 9 7 12 12 C 1.40577 * 119.08217 * 0.02562 * 11 10 9 13 13 C 1.47648 * 120.79837 * 179.97438 * 12 11 10 14 14 C 1.39220 * 120.00829 * 310.01721 * 13 12 11 15 15 C 1.38297 * 120.00563 * 180.02562 * 14 13 12 16 16 C 1.37462 * 120.64132 * 359.69440 * 15 14 13 17 17 C 1.41233 * 120.68359 * 0.56992 * 16 15 14 18 18 C 1.45443 * 129.22722 * 179.76338 * 17 16 15 19 19 C 1.31852 * 114.88640 * 179.71694 * 18 17 16 20 20 S 1.75299 * 111.37120 * 359.97438 * 19 18 17 21 21 C 1.39585 * 118.94331 * 359.46182 * 17 16 15 22 22 C 1.40580 * 118.40348 * 0.24990 * 12 11 10 23 23 N 1.31531 * 119.07803 * 359.48204 * 22 12 11 24 24 H 0.96997 * 120.00459 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.45486 * 179.97438 * 11 10 9 26 26 H 1.08005 * 119.99794 * 359.97438 * 14 13 12 27 27 H 1.08004 * 119.68197 * 180.02562 * 15 14 13 28 28 H 1.07998 * 119.65975 * 180.02562 * 16 15 14 29 29 H 1.07995 * 122.55932 * 359.69373 * 18 17 16 30 30 H 1.08002 * 124.31000 * 180.02562 * 19 18 17 31 31 H 1.08004 * 120.46375 * 179.73120 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0946 1.6965 -1.2125 5 1 1.2758 2.7465 0.0006 6 1 3.0947 1.6964 1.2125 7 6 2.0074 -1.2132 -0.0005 8 1 3.0874 -1.2132 -0.0001 9 6 1.3029 -2.4335 -0.0005 10 7 1.9892 -3.5811 -0.0005 11 6 1.3660 -4.7394 -0.0010 12 6 -0.0397 -4.7591 -0.0021 13 6 -0.7779 -6.0377 -0.0033 14 6 -0.4539 -7.0279 -0.9268 15 6 -1.1458 -8.2254 -0.9282 16 6 -2.1515 -8.4545 -0.0196 17 6 -2.5071 -7.4675 0.9260 18 6 -3.5320 -7.5085 1.9572 19 6 -3.6197 -6.4199 2.6959 20 16 -2.4440 -5.2168 2.2027 21 6 -1.8128 -6.2566 0.9322 22 6 -0.7256 -3.5320 -0.0080 23 7 -0.0341 -2.4131 -0.0019 24 1 -0.4851 0.8400 0.0004 25 1 1.9264 -5.6626 -0.0015 26 1 0.3372 -6.8606 -1.6428 27 1 -0.8899 -8.9901 -1.6467 28 1 -2.6812 -9.3955 -0.0346 29 1 -4.1726 -8.3651 2.1062 30 1 -4.3254 -6.2868 3.5026 31 1 -1.8053 -3.5082 -0.0134 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241405220.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:38 Heat of formation + Delta-G solvation = 84.733937 kcal Electronic energy + Delta-G solvation = -18178.668056 eV Core-core repulsion = 15323.070787 eV Total energy + Delta-G solvation = -2855.597269 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.39861 -38.52340 -35.04262 -33.94683 -32.12163 -31.74003 -29.19019 -28.87579 -26.17447 -23.49791 -22.91521 -22.50205 -21.01901 -20.00191 -17.98925 -17.49669 -16.15265 -15.58659 -15.14048 -15.11876 -14.70722 -14.54328 -13.58740 -13.46391 -13.25533 -12.88035 -12.79101 -12.25024 -12.14968 -11.46163 -11.38001 -11.32752 -11.17891 -10.96805 -10.83594 -10.42420 -10.29143 -9.66970 -9.31547 -9.22436 -9.19948 -8.29914 -8.02851 -7.51872 -7.08633 -6.66811 -4.85630 1.03074 1.50034 1.90922 2.33647 2.40516 2.70203 2.92739 2.97546 3.00391 3.06126 3.76994 4.06612 4.51512 4.81402 5.12588 5.32770 5.40644 5.56414 5.65575 5.70238 5.78676 5.83116 6.01749 6.08735 6.13922 6.22845 6.37235 6.60255 6.68959 6.76552 6.86698 6.97515 7.21871 7.22906 7.53513 8.00553 8.34689 8.42043 8.97992 9.96065 10.13990 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.028104 B = 0.004678 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.068253 B = 5984.149892 C = 6727.256772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.697 5.697 2 C 0.061 3.939 3 Si 0.922 3.078 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.379 4.379 8 H 0.096 0.904 9 C 0.381 3.619 10 N -0.593 5.593 11 C 0.193 3.807 12 C -0.344 4.344 13 C 0.068 3.932 14 C -0.124 4.124 15 C -0.108 4.108 16 C -0.114 4.114 17 C -0.075 4.075 18 C -0.126 4.126 19 C -0.207 4.207 20 S 0.100 5.900 21 C -0.141 4.141 22 C 0.186 3.814 23 N -0.505 5.505 24 H 0.280 0.720 25 H 0.131 0.869 26 H 0.125 0.875 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.137 0.863 30 H 0.161 0.839 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.905 -9.713 1.590 11.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.317 5.317 2 C -0.168 4.168 3 Si 0.745 3.255 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.185 1.185 7 C -0.412 4.412 8 H 0.114 0.886 9 C 0.149 3.851 10 N -0.311 5.311 11 C 0.018 3.982 12 C -0.355 4.355 13 C 0.062 3.938 14 C -0.146 4.146 15 C -0.128 4.128 16 C -0.134 4.134 17 C -0.083 4.083 18 C -0.157 4.157 19 C -0.341 4.341 20 S 0.365 5.635 21 C -0.256 4.256 22 C 0.008 3.992 23 N -0.220 5.220 24 H 0.091 0.909 25 H 0.148 0.852 26 H 0.143 0.857 27 H 0.139 0.861 28 H 0.135 0.865 29 H 0.155 0.845 30 H 0.178 0.822 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.237 -7.023 2.191 9.030 hybrid contribution -0.690 -1.707 -0.441 1.893 sum -5.927 -8.729 1.750 10.696 Atomic orbital electron populations 1.70123 1.07444 1.28801 1.25332 1.26212 0.95116 1.01730 0.93696 0.86131 0.79931 0.79100 0.80304 1.18544 1.19902 1.18541 1.19407 0.95084 0.87869 1.38851 0.88607 1.19942 0.85939 0.90855 0.88393 1.68663 1.40546 0.98421 1.23503 1.22635 0.89948 0.95864 0.89733 1.19722 0.95417 0.92767 1.27580 1.18095 0.91321 0.93290 0.91052 1.21181 1.01127 0.93370 0.98925 1.20785 0.96205 0.97208 0.98567 1.20768 0.98949 0.97881 0.95795 1.19231 0.96905 0.94278 0.97884 1.20874 0.99467 0.99183 0.96155 1.25193 1.04999 0.98672 1.05196 1.84633 1.31389 1.17410 1.30049 1.22902 1.02931 0.97811 1.01986 1.22983 0.98861 0.87707 0.89611 1.69368 1.08012 1.26402 1.18244 0.90885 0.85171 0.85675 0.86128 0.86472 0.84513 0.82154 0.85491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.78 11.40 55.55 0.63 -17.15 16 2 C 0.06 1.50 5.50 -17.34 -0.10 1.40 16 3 Si 0.92 17.83 29.56 -169.99 -5.02 12.80 16 4 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 7 C -0.38 -10.09 9.34 -37.88 -0.35 -10.44 16 8 H 0.10 2.43 7.85 -52.48 -0.41 2.02 16 9 C 0.38 10.58 7.35 -158.12 -1.16 9.41 16 10 N -0.59 -15.49 10.34 -12.40 -0.13 -15.61 16 11 C 0.19 4.41 10.84 -16.80 -0.18 4.23 16 12 C -0.34 -7.61 5.40 -104.29 -0.56 -8.18 16 13 C 0.07 1.29 5.54 -104.56 -0.58 0.71 16 14 C -0.12 -2.02 9.53 -39.19 -0.37 -2.40 16 15 C -0.11 -1.48 9.98 -39.84 -0.40 -1.88 16 16 C -0.11 -1.57 10.09 -38.73 -0.39 -1.96 16 17 C -0.08 -1.18 6.04 -105.39 -0.64 -1.82 16 18 C -0.13 -1.69 10.39 -38.62 -0.40 -2.09 16 19 C -0.21 -2.79 11.02 28.83 0.32 -2.47 16 20 S 0.10 1.71 21.77 -107.50 -2.34 -0.63 16 21 C -0.14 -2.54 6.23 -37.95 -0.24 -2.78 16 22 C 0.19 4.48 10.05 -16.80 -0.17 4.32 16 23 N -0.50 -13.78 7.82 -12.40 -0.10 -13.87 16 24 H 0.28 6.39 8.29 -40.82 -0.34 6.06 16 25 H 0.13 2.54 8.06 -52.49 -0.42 2.12 16 26 H 0.13 1.90 8.05 -52.48 -0.42 1.48 16 27 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 28 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.13 2.87 7.67 -52.48 -0.40 2.46 16 LS Contribution 291.63 15.07 4.39 4.39 Total: -1.00 -29.53 291.63 -10.27 -39.80 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -2.48 Total: 4.20 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: -5.22 Total: -13.92 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: 0.41 Total: -46.64 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.02 Total: 12.80 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.34 Total: -0.63 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.53 -10.27 -39.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241405220.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.534 kcal (2) G-P(sol) polarization free energy of solvation -29.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds