Wall clock time and date at job start Fri Apr 10 2020 14:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30686 * 1 3 3 Si 1.86800 * 119.99967 * 2 1 4 4 H 1.48502 * 109.47498 * 240.00100 * 3 2 1 5 5 H 1.48501 * 109.47194 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47242 * 120.00222 * 3 2 1 7 7 C 1.40092 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00193 * 180.02562 * 7 2 1 9 9 C 1.40907 * 120.00187 * 359.97438 * 7 2 1 10 10 N 1.33714 * 119.12268 * 180.02562 * 9 7 2 11 11 C 1.31534 * 120.83659 * 180.02562 * 10 9 7 12 12 C 1.40577 * 119.08217 * 0.02562 * 11 10 9 13 13 C 1.47648 * 120.79837 * 179.97438 * 12 11 10 14 14 C 1.39220 * 120.00829 * 310.01721 * 13 12 11 15 15 C 1.38297 * 120.00563 * 180.02562 * 14 13 12 16 16 C 1.37462 * 120.64132 * 359.69440 * 15 14 13 17 17 C 1.41233 * 120.68359 * 0.56992 * 16 15 14 18 18 C 1.45443 * 129.22722 * 179.76338 * 17 16 15 19 19 C 1.31852 * 114.88640 * 179.71694 * 18 17 16 20 20 S 1.75299 * 111.37120 * 359.97438 * 19 18 17 21 21 C 1.39585 * 118.94331 * 359.46182 * 17 16 15 22 22 C 1.40580 * 118.40348 * 0.24990 * 12 11 10 23 23 N 1.31531 * 119.07803 * 359.48204 * 22 12 11 24 24 H 0.96997 * 120.00459 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.45486 * 179.97438 * 11 10 9 26 26 H 1.08005 * 119.99794 * 359.97438 * 14 13 12 27 27 H 1.08004 * 119.68197 * 180.02562 * 15 14 13 28 28 H 1.07998 * 119.65975 * 180.02562 * 16 15 14 29 29 H 1.07995 * 122.55932 * 359.69373 * 18 17 16 30 30 H 1.08002 * 124.31000 * 180.02562 * 19 18 17 31 31 H 1.08004 * 120.46375 * 179.73120 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0946 1.6965 -1.2125 5 1 1.2758 2.7465 0.0006 6 1 3.0947 1.6964 1.2125 7 6 2.0074 -1.2132 -0.0005 8 1 3.0874 -1.2132 -0.0001 9 6 1.3029 -2.4335 -0.0005 10 7 1.9892 -3.5811 -0.0005 11 6 1.3660 -4.7394 -0.0010 12 6 -0.0397 -4.7591 -0.0021 13 6 -0.7779 -6.0377 -0.0033 14 6 -0.4539 -7.0279 -0.9268 15 6 -1.1458 -8.2254 -0.9282 16 6 -2.1515 -8.4545 -0.0196 17 6 -2.5071 -7.4675 0.9260 18 6 -3.5320 -7.5085 1.9572 19 6 -3.6197 -6.4199 2.6959 20 16 -2.4440 -5.2168 2.2027 21 6 -1.8128 -6.2566 0.9322 22 6 -0.7256 -3.5320 -0.0080 23 7 -0.0341 -2.4131 -0.0019 24 1 -0.4851 0.8400 0.0004 25 1 1.9264 -5.6626 -0.0015 26 1 0.3372 -6.8606 -1.6428 27 1 -0.8899 -8.9901 -1.6467 28 1 -2.6812 -9.3955 -0.0346 29 1 -4.1726 -8.3651 2.1062 30 1 -4.3254 -6.2868 3.5026 31 1 -1.8053 -3.5082 -0.0134 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241405220.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:57:38 Heat of formation + Delta-G solvation = 68.874885 kcal Electronic energy + Delta-G solvation = -18179.355756 eV Core-core repulsion = 15323.070787 eV Total energy + Delta-G solvation = -2856.284969 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.03552 -39.99445 -36.34143 -35.64484 -33.92045 -33.40339 -30.73840 -30.15880 -27.91834 -24.96935 -24.55996 -24.03865 -22.49371 -21.21055 -19.85552 -18.77073 -17.99730 -17.05576 -16.76159 -16.40025 -16.15931 -15.91779 -15.03422 -14.80812 -14.55404 -14.48428 -14.44164 -14.03156 -13.29254 -13.14468 -12.93966 -12.76597 -12.56645 -12.38088 -12.14748 -11.99479 -11.55445 -11.38534 -11.17969 -11.00724 -10.64781 -9.81004 -9.43876 -9.37492 -8.57118 -8.42811 -6.79406 -0.15707 0.14998 0.67543 0.77092 0.98795 1.25980 1.38267 1.43332 1.53220 1.55284 2.16485 2.65570 2.87631 3.75111 3.81487 3.89931 3.92607 3.93575 4.17170 4.26523 4.39350 4.47624 4.54609 4.82495 4.87374 4.95113 5.04261 5.10050 5.16974 5.27609 5.50326 5.58464 5.65921 5.76122 6.04034 6.06788 6.43105 6.52093 7.08084 8.11995 8.27191 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.028104 B = 0.004678 C = 0.004161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.068253 B = 5984.149892 C = 6727.256772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.021 3.979 3 Si 1.003 2.997 4 H -0.255 1.255 5 H -0.261 1.261 6 H -0.257 1.257 7 C -0.420 4.420 8 H 0.095 0.905 9 C 0.353 3.647 10 N -0.616 5.616 11 C 0.179 3.821 12 C -0.320 4.320 13 C 0.025 3.975 14 C -0.119 4.119 15 C -0.105 4.105 16 C -0.095 4.095 17 C -0.088 4.088 18 C -0.118 4.118 19 C -0.194 4.194 20 S 0.023 5.977 21 C -0.156 4.156 22 C 0.170 3.830 23 N -0.536 5.536 24 H 0.288 0.712 25 H 0.163 0.837 26 H 0.131 0.869 27 H 0.161 0.839 28 H 0.160 0.840 29 H 0.180 0.820 30 H 0.194 0.806 31 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.095 -12.469 1.439 14.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.204 4.204 3 Si 0.822 3.178 4 H -0.179 1.179 5 H -0.185 1.185 6 H -0.181 1.181 7 C -0.454 4.454 8 H 0.113 0.887 9 C 0.119 3.881 10 N -0.336 5.336 11 C 0.006 3.994 12 C -0.329 4.329 13 C 0.019 3.981 14 C -0.141 4.141 15 C -0.125 4.125 16 C -0.115 4.115 17 C -0.097 4.097 18 C -0.148 4.148 19 C -0.327 4.327 20 S 0.286 5.714 21 C -0.271 4.271 22 C -0.005 4.005 23 N -0.252 5.252 24 H 0.099 0.901 25 H 0.180 0.820 26 H 0.149 0.851 27 H 0.179 0.821 28 H 0.177 0.823 29 H 0.197 0.803 30 H 0.211 0.789 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.465 -9.860 2.037 11.965 hybrid contribution -0.484 -1.226 -0.397 1.377 sum -6.949 -11.086 1.640 13.186 Atomic orbital electron populations 1.70196 1.09142 1.30261 1.26235 1.27182 0.95914 1.04920 0.92369 0.84950 0.78488 0.74009 0.80402 1.17923 1.18467 1.18060 1.19725 0.95302 0.88948 1.41379 0.88697 1.20352 0.86462 0.91882 0.89372 1.68668 1.41161 0.99061 1.24676 1.23195 0.90824 0.96085 0.89288 1.19956 0.95310 0.93784 1.23899 1.18057 0.93211 0.92890 0.93941 1.21391 1.01137 0.93619 0.97911 1.21207 0.95361 0.96794 0.99138 1.21328 0.97877 0.98562 0.93703 1.19744 0.97219 0.93703 0.99002 1.21266 0.98773 1.00157 0.94605 1.25441 1.04131 0.97026 1.06122 1.84893 1.34262 1.20619 1.31601 1.22996 1.03213 0.98947 1.01989 1.23188 0.99159 0.88269 0.89931 1.69308 1.08217 1.27997 1.19727 0.90105 0.82021 0.85104 0.82096 0.82263 0.80290 0.78928 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -39.41 11.40 21.85 0.25 -39.16 16 2 C 0.02 1.06 5.50 85.31 0.47 1.53 16 3 Si 1.00 37.44 29.56 68.60 2.03 39.47 16 4 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 5 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 6 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 7 C -0.42 -23.58 9.34 23.37 0.22 -23.36 16 8 H 0.09 5.09 7.85 -2.91 -0.02 5.07 16 9 C 0.35 20.77 7.35 134.82 0.99 21.76 16 10 N -0.62 -33.73 10.34 -193.14 -2.00 -35.72 16 11 C 0.18 8.43 10.84 85.31 0.92 9.35 16 12 C -0.32 -14.61 5.40 -19.65 -0.11 -14.72 16 13 C 0.02 0.93 5.54 -19.83 -0.11 0.82 16 14 C -0.12 -3.64 9.53 22.52 0.21 -3.42 16 15 C -0.11 -2.43 9.98 22.10 0.22 -2.20 16 16 C -0.09 -2.13 10.09 22.82 0.23 -1.90 16 17 C -0.09 -2.49 6.04 -20.36 -0.12 -2.62 16 18 C -0.12 -2.69 10.39 23.32 0.24 -2.45 16 19 C -0.19 -4.76 11.02 67.01 0.74 -4.03 16 20 S 0.02 0.79 21.77 -56.49 -1.23 -0.44 16 21 C -0.16 -5.54 6.23 23.33 0.15 -5.40 16 22 C 0.17 8.67 10.05 85.31 0.86 9.53 16 23 N -0.54 -31.07 7.82 -193.14 -1.51 -32.58 16 24 H 0.29 13.68 8.29 -92.71 -0.77 12.91 16 25 H 0.16 6.33 8.06 -2.91 -0.02 6.30 16 26 H 0.13 3.74 8.05 -2.91 -0.02 3.72 16 27 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 28 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 29 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 30 H 0.19 3.35 8.06 -2.91 -0.02 3.33 16 31 H 0.13 6.38 7.67 -2.91 -0.02 6.36 16 Total: -1.00 -69.58 291.63 3.62 -65.96 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 1.17 Total: 19.58 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 4.91 Total: -17.11 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -3.26 Total: -107.47 kcal Atomic # 14 Polarization: 37.44 SS G_CDS: 2.03 Total: 39.47 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -1.23 Total: -0.44 kcal Total: -69.58 3.62 -65.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241405220.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.835 kcal (2) G-P(sol) polarization free energy of solvation -69.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds