Wall clock time and date at job start Fri Apr 10 2020 14:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30795 * 1 3 3 Si 1.86808 * 119.99593 * 2 1 4 4 H 1.48503 * 109.46810 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46901 * 299.99798 * 3 2 1 6 6 H 1.48496 * 109.46820 * 59.99928 * 3 2 1 7 7 C 1.40041 * 120.00401 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00203 * 165.57340 * 7 2 1 9 9 C 1.40861 * 120.00041 * 345.57486 * 7 2 1 10 10 C 1.41118 * 120.71934 * 332.86586 * 9 7 2 11 11 C 1.36883 * 118.39981 * 179.97438 * 10 9 7 12 12 C 1.38871 * 119.81009 * 0.27406 * 11 10 9 13 13 N 1.31742 * 121.50448 * 359.39586 * 12 11 10 14 14 C 1.32613 * 121.71965 * 0.63948 * 13 12 11 15 15 C 1.47739 * 120.00062 * 179.67531 * 14 13 12 16 16 C 1.40125 * 120.43044 * 136.33124 * 15 14 13 17 17 N 1.30984 * 120.85966 * 180.02562 * 16 15 14 18 18 C 1.33607 * 122.39575 * 359.97438 * 17 16 15 19 19 S 1.76054 * 130.11513 * 179.97438 * 18 17 16 20 20 C 1.75264 * 92.26574 * 179.97438 * 19 18 17 21 21 C 1.31732 * 111.50177 * 359.97438 * 20 19 18 22 22 C 1.40054 * 120.43652 * 359.97438 * 18 17 16 23 23 C 1.39246 * 120.43653 * 316.05759 * 15 14 13 24 24 H 0.96993 * 120.00266 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.80337 * 359.95387 * 10 9 7 26 26 H 1.07996 * 120.09930 * 179.97438 * 11 10 9 27 27 H 1.07995 * 119.24798 * 179.70376 * 12 11 10 28 28 H 1.08001 * 119.57459 * 0.02562 * 16 15 14 29 29 H 1.08001 * 124.24648 * 180.02562 * 20 19 18 30 30 H 1.08000 * 122.58373 * 179.97438 * 21 20 19 31 31 H 1.08002 * 120.69747 * 359.97049 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6179 0.0000 4 1 3.7019 1.3465 0.0006 5 1 1.8831 2.3965 -1.2125 6 1 1.8830 2.3965 1.2125 7 6 2.0082 -1.2127 -0.0005 8 1 3.0627 -1.2274 -0.2336 9 6 1.3373 -2.4136 0.3028 10 6 0.1930 -2.4113 1.1287 11 6 -0.4221 -3.6053 1.3922 12 6 0.0889 -4.7789 0.8535 13 7 1.1539 -4.7738 0.0781 14 6 1.7970 -3.6519 -0.2159 15 6 2.9920 -3.6911 -1.0839 16 6 3.1628 -2.7411 -2.0996 17 7 4.2187 -2.7683 -2.8743 18 6 5.1791 -3.6878 -2.7433 19 16 6.6655 -3.9140 -3.6593 20 6 7.1248 -5.3089 -2.7027 21 6 6.2287 -5.5739 -1.7742 22 6 5.0873 -4.6735 -1.7525 23 6 3.9659 -4.6691 -0.8996 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1880 -1.4897 1.5431 26 1 -1.2995 -3.6354 2.0211 27 1 -0.4008 -5.7165 1.0712 28 1 2.4142 -1.9765 -2.2458 29 1 8.0293 -5.8791 -2.8548 30 1 6.3330 -6.3975 -1.0833 31 1 3.8622 -5.4107 -0.1213 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242678332.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:40 Heat of formation + Delta-G solvation = 72.811840 kcal Electronic energy + Delta-G solvation = -18460.791641 eV Core-core repulsion = 15604.677392 eV Total energy + Delta-G solvation = -2856.114250 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -39.78758 -38.31000 -35.38008 -34.31156 -32.51621 -30.76642 -30.03497 -28.49319 -25.93936 -23.99098 -23.18052 -21.61765 -21.54075 -19.82249 -17.85420 -17.50813 -16.33956 -15.76568 -15.51525 -15.01199 -14.52248 -14.17435 -14.00228 -13.81014 -13.19548 -12.65998 -12.49008 -12.42694 -12.10899 -11.74449 -11.59536 -11.49352 -11.30186 -11.19441 -10.70615 -10.65423 -10.01664 -9.72254 -9.57595 -8.98088 -8.55988 -8.24229 -8.20398 -7.92221 -7.38210 -7.03858 -4.69472 0.98972 1.47190 1.60390 2.20382 2.48940 2.59356 2.82350 2.94781 3.01174 3.05954 3.72773 4.25878 4.40789 4.77525 5.08798 5.18886 5.37067 5.43245 5.63160 5.70602 5.86509 6.03447 6.11901 6.27671 6.34325 6.52372 6.57282 6.68539 6.81650 6.93279 7.04524 7.15641 7.54556 7.63195 7.73847 8.19716 8.33341 8.43097 8.49784 9.39887 9.82983 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.016637 B = 0.006228 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.609641 B = 4494.578487 C = 5912.679315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.442 4.442 8 H 0.089 0.911 9 C 0.089 3.911 10 C -0.126 4.126 11 C -0.146 4.146 12 C -0.029 4.029 13 N -0.450 5.450 14 C 0.005 3.995 15 C -0.019 4.019 16 C 0.161 3.839 17 N -0.468 5.468 18 C 0.043 3.957 19 S 0.098 5.902 20 C -0.206 4.206 21 C -0.104 4.104 22 C -0.132 4.132 23 C -0.038 4.038 24 H 0.287 0.713 25 H 0.128 0.872 26 H 0.101 0.899 27 H 0.123 0.877 28 H 0.177 0.823 29 H 0.166 0.834 30 H 0.143 0.857 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.308 -3.861 -1.544 8.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.179 1.179 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.107 0.893 9 C 0.084 3.916 10 C -0.152 4.152 11 C -0.166 4.166 12 C -0.191 4.191 13 N -0.157 5.157 14 C -0.132 4.132 15 C -0.024 4.024 16 C -0.008 4.008 17 N -0.178 5.178 18 C -0.200 4.200 19 S 0.357 5.643 20 C -0.340 4.340 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.066 4.066 24 H 0.098 0.902 25 H 0.146 0.854 26 H 0.119 0.881 27 H 0.141 0.859 28 H 0.194 0.806 29 H 0.184 0.816 30 H 0.161 0.839 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.280 -3.161 -3.793 9.641 hybrid contribution -0.940 0.202 2.298 2.492 sum 7.339 -2.959 -1.495 8.053 Atomic orbital electron populations 1.69750 1.07737 1.30118 1.32693 1.26010 0.94826 1.01741 0.91847 0.86194 0.81269 0.80239 0.79008 1.17922 1.19363 1.19386 1.19664 0.97358 0.90407 1.39587 0.89345 1.18309 0.91709 0.92332 0.89219 1.21412 0.97825 0.97079 0.98844 1.21464 0.99774 0.94451 1.00937 1.21676 0.97360 0.96609 1.03451 1.67003 1.07119 1.30247 1.11350 1.19159 0.99040 0.89834 1.05203 1.19257 0.93602 0.94501 0.95011 1.23302 0.92955 0.96352 0.88222 1.67160 1.01403 1.22165 1.27077 1.23439 1.00158 0.97060 0.99381 1.83915 1.15013 1.28556 1.36841 1.24962 1.04452 1.02785 1.01790 1.20787 0.92916 0.99987 0.99780 1.20022 0.97347 0.97698 0.99103 1.21467 0.90328 0.97790 0.97051 0.90152 0.85437 0.88091 0.85943 0.80571 0.81636 0.83934 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.04 10.97 55.55 0.61 -17.43 16 2 C 0.08 1.73 5.21 -17.32 -0.09 1.64 16 3 Si 0.91 17.36 29.58 -169.99 -5.03 12.33 16 4 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 5 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 6 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.44 -10.51 6.77 -37.91 -0.26 -10.76 16 8 H 0.09 2.10 6.41 -52.49 -0.34 1.76 16 9 C 0.09 2.18 5.55 -106.41 -0.59 1.59 16 10 C -0.13 -2.98 8.72 -38.98 -0.34 -3.32 16 11 C -0.15 -3.14 10.03 -39.84 -0.40 -3.54 16 12 C -0.03 -0.63 11.16 -17.36 -0.19 -0.82 16 13 N -0.45 -10.51 10.16 -9.18 -0.09 -10.60 16 14 C 0.01 0.13 6.44 -82.24 -0.53 -0.40 16 15 C -0.02 -0.41 5.25 -104.93 -0.55 -0.96 16 16 C 0.16 3.46 8.99 -17.21 -0.15 3.31 16 17 N -0.47 -9.77 10.35 -11.36 -0.12 -9.89 16 18 C 0.04 0.81 7.65 -16.10 -0.12 0.69 16 19 S 0.10 1.45 23.23 -107.50 -2.50 -1.04 16 20 C -0.21 -2.59 11.01 28.85 0.32 -2.28 16 21 C -0.10 -1.47 10.39 -38.62 -0.40 -1.87 16 22 C -0.13 -2.38 6.04 -105.36 -0.64 -3.02 16 23 C -0.04 -0.75 9.85 -38.20 -0.38 -1.13 16 24 H 0.29 6.02 8.29 -40.82 -0.34 5.68 16 25 H 0.13 3.05 6.34 -52.49 -0.33 2.72 16 26 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 27 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 28 H 0.18 3.83 6.74 -52.49 -0.35 3.48 16 29 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16 31 H 0.13 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 286.77 15.07 4.32 4.32 Total: -1.00 -26.41 286.77 -9.40 -35.82 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -2.27 Total: 7.36 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -4.33 Total: -20.87 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.40 Total: -37.92 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Atomic # 16 Polarization: 1.45 SS G_CDS: -2.50 Total: -1.04 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -26.41 -9.40 -35.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242678332.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.627 kcal (2) G-P(sol) polarization free energy of solvation -26.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds