Wall clock time and date at job start Fri Apr 10 2020 14:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30795 * 1 3 3 Si 1.86808 * 119.99593 * 2 1 4 4 H 1.48503 * 109.46810 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46901 * 299.99798 * 3 2 1 6 6 H 1.48496 * 109.46820 * 59.99928 * 3 2 1 7 7 C 1.40041 * 120.00401 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00203 * 165.57340 * 7 2 1 9 9 C 1.40861 * 120.00041 * 345.57486 * 7 2 1 10 10 C 1.41118 * 120.71934 * 332.86586 * 9 7 2 11 11 C 1.36883 * 118.39981 * 179.97438 * 10 9 7 12 12 C 1.38871 * 119.81009 * 0.27406 * 11 10 9 13 13 N 1.31742 * 121.50448 * 359.39586 * 12 11 10 14 14 C 1.32613 * 121.71965 * 0.63948 * 13 12 11 15 15 C 1.47739 * 120.00062 * 179.67531 * 14 13 12 16 16 C 1.40125 * 120.43044 * 136.33124 * 15 14 13 17 17 N 1.30984 * 120.85966 * 180.02562 * 16 15 14 18 18 C 1.33607 * 122.39575 * 359.97438 * 17 16 15 19 19 S 1.76054 * 130.11513 * 179.97438 * 18 17 16 20 20 C 1.75264 * 92.26574 * 179.97438 * 19 18 17 21 21 C 1.31732 * 111.50177 * 359.97438 * 20 19 18 22 22 C 1.40054 * 120.43652 * 359.97438 * 18 17 16 23 23 C 1.39246 * 120.43653 * 316.05759 * 15 14 13 24 24 H 0.96993 * 120.00266 * 0.02562 * 1 2 3 25 25 H 1.07993 * 120.80337 * 359.95387 * 10 9 7 26 26 H 1.07996 * 120.09930 * 179.97438 * 11 10 9 27 27 H 1.07995 * 119.24798 * 179.70376 * 12 11 10 28 28 H 1.08001 * 119.57459 * 0.02562 * 16 15 14 29 29 H 1.08001 * 124.24648 * 180.02562 * 20 19 18 30 30 H 1.08000 * 122.58373 * 179.97438 * 21 20 19 31 31 H 1.08002 * 120.69747 * 359.97049 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6179 0.0000 4 1 3.7019 1.3465 0.0006 5 1 1.8831 2.3965 -1.2125 6 1 1.8830 2.3965 1.2125 7 6 2.0082 -1.2127 -0.0005 8 1 3.0627 -1.2274 -0.2336 9 6 1.3373 -2.4136 0.3028 10 6 0.1930 -2.4113 1.1287 11 6 -0.4221 -3.6053 1.3922 12 6 0.0889 -4.7789 0.8535 13 7 1.1539 -4.7738 0.0781 14 6 1.7970 -3.6519 -0.2159 15 6 2.9920 -3.6911 -1.0839 16 6 3.1628 -2.7411 -2.0996 17 7 4.2187 -2.7683 -2.8743 18 6 5.1791 -3.6878 -2.7433 19 16 6.6655 -3.9140 -3.6593 20 6 7.1248 -5.3089 -2.7027 21 6 6.2287 -5.5739 -1.7742 22 6 5.0873 -4.6735 -1.7525 23 6 3.9659 -4.6691 -0.8996 24 1 -0.4850 0.8400 -0.0004 25 1 -0.1880 -1.4897 1.5431 26 1 -1.2995 -3.6354 2.0211 27 1 -0.4008 -5.7165 1.0712 28 1 2.4142 -1.9765 -2.2458 29 1 8.0293 -5.8791 -2.8548 30 1 6.3330 -6.3975 -1.0833 31 1 3.8622 -5.4107 -0.1213 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242678332.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:39 Heat of formation + Delta-G solvation = 59.003497 kcal Electronic energy + Delta-G solvation = -18461.390416 eV Core-core repulsion = 15604.677392 eV Total energy + Delta-G solvation = -2856.713024 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.30743 -39.98402 -36.68526 -36.03764 -34.11941 -32.52831 -31.54702 -30.00253 -27.68266 -25.51406 -24.62744 -23.28125 -23.09143 -21.26566 -19.41302 -19.06846 -17.89657 -17.32487 -17.13984 -16.42195 -16.17044 -15.73717 -15.40944 -15.15832 -14.67393 -14.28876 -14.10947 -13.98674 -13.53341 -13.32534 -13.23262 -13.15349 -12.79793 -12.64600 -12.27297 -11.84439 -11.71532 -11.26885 -11.24488 -10.51170 -10.23813 -10.00537 -9.74844 -9.41691 -8.86908 -8.69060 -6.48349 -0.38625 -0.06818 0.32734 0.80064 1.03044 1.06127 1.36037 1.37322 1.45998 1.49258 2.13518 2.64585 2.74074 3.44326 3.58158 3.69340 3.80516 4.02609 4.09241 4.39354 4.49828 4.57246 4.69501 4.75266 4.83766 4.97656 5.02110 5.12534 5.23344 5.29966 5.40699 5.58070 5.79525 5.87741 5.97860 6.42617 6.66320 6.71780 6.80631 7.63494 8.15348 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.016637 B = 0.006228 C = 0.004734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.609641 B = 4494.578487 C = 5912.679315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.046 3.954 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.263 1.263 6 H -0.258 1.258 7 C -0.459 4.459 8 H 0.078 0.922 9 C 0.063 3.937 10 C -0.147 4.147 11 C -0.143 4.143 12 C -0.033 4.033 13 N -0.465 5.465 14 C -0.006 4.006 15 C -0.042 4.042 16 C 0.147 3.853 17 N -0.483 5.483 18 C 0.009 3.991 19 S 0.125 5.875 20 C -0.175 4.175 21 C -0.120 4.120 22 C -0.133 4.133 23 C -0.039 4.039 24 H 0.296 0.704 25 H 0.119 0.881 26 H 0.134 0.866 27 H 0.156 0.844 28 H 0.160 0.840 29 H 0.215 0.785 30 H 0.176 0.824 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.321 -5.149 -1.691 10.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.173 4.173 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.187 1.187 6 H -0.182 1.182 7 C -0.488 4.488 8 H 0.096 0.904 9 C 0.058 3.942 10 C -0.173 4.173 11 C -0.163 4.163 12 C -0.195 4.195 13 N -0.173 5.173 14 C -0.143 4.143 15 C -0.048 4.048 16 C -0.023 4.023 17 N -0.193 5.193 18 C -0.234 4.234 19 S 0.383 5.617 20 C -0.308 4.308 21 C -0.150 4.150 22 C -0.144 4.144 23 C -0.067 4.067 24 H 0.107 0.893 25 H 0.137 0.863 26 H 0.151 0.849 27 H 0.173 0.827 28 H 0.177 0.823 29 H 0.232 0.768 30 H 0.193 0.807 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.281 -4.458 -3.938 11.878 hybrid contribution -1.442 0.443 2.262 2.718 sum 8.840 -4.016 -1.677 9.853 Atomic orbital electron populations 1.69768 1.08717 1.31321 1.33180 1.26647 0.95443 1.04054 0.91129 0.85286 0.79318 0.76690 0.79464 1.18894 1.18728 1.18174 1.19673 0.96999 0.91231 1.40900 0.90393 1.18619 0.92523 0.93088 0.89934 1.21472 0.98452 0.97739 0.99652 1.21776 1.00336 0.93570 1.00662 1.22284 0.96764 0.98028 1.02399 1.67071 1.07898 1.30185 1.12123 1.19453 0.99754 0.89790 1.05311 1.19252 0.94085 0.95889 0.95550 1.22983 0.93493 0.96561 0.89232 1.67132 1.01782 1.23224 1.27174 1.24172 1.01283 0.97036 1.00863 1.83886 1.12013 1.29551 1.36212 1.25550 1.05043 1.00930 0.99305 1.20997 0.91735 1.00651 1.01593 1.20436 0.97887 0.98121 0.97934 1.21583 0.90490 0.97146 0.97481 0.89300 0.86294 0.84861 0.82674 0.82300 0.76806 0.80721 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.42 10.97 21.84 0.24 -38.18 16 2 C 0.05 2.12 5.21 85.28 0.44 2.57 16 3 Si 0.97 36.46 29.58 68.60 2.03 38.49 16 4 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 5 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 6 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 7 C -0.46 -23.01 6.77 23.35 0.16 -22.86 16 8 H 0.08 3.95 6.41 -2.91 -0.02 3.93 16 9 C 0.06 3.22 5.55 -21.02 -0.12 3.10 16 10 C -0.15 -7.17 8.72 22.66 0.20 -6.97 16 11 C -0.14 -6.13 10.03 22.10 0.22 -5.91 16 12 C -0.03 -1.42 11.16 84.86 0.95 -0.47 16 13 N -0.46 -21.97 10.16 -182.94 -1.86 -23.83 16 14 C -0.01 -0.27 6.44 42.45 0.27 0.00 16 15 C -0.04 -1.93 5.25 -20.07 -0.11 -2.04 16 16 C 0.15 6.66 8.99 85.28 0.77 7.43 16 17 N -0.48 -20.76 10.35 -189.86 -1.97 -22.73 16 18 C 0.01 0.35 7.65 84.86 0.65 1.00 16 19 S 0.12 3.36 23.23 -56.49 -1.31 2.05 16 20 C -0.17 -3.56 11.01 67.11 0.74 -2.82 16 21 C -0.12 -2.96 10.39 23.40 0.24 -2.71 16 22 C -0.13 -4.67 6.04 -20.35 -0.12 -4.79 16 23 C -0.04 -1.54 9.85 23.16 0.23 -1.31 16 24 H 0.30 12.64 8.29 -92.71 -0.77 11.87 16 25 H 0.12 5.90 6.34 -2.91 -0.02 5.88 16 26 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 27 H 0.16 5.46 8.06 -2.91 -0.02 5.44 16 28 H 0.16 7.55 6.74 -2.91 -0.02 7.53 16 29 H 0.22 2.33 8.06 -2.91 -0.02 2.30 16 30 H 0.18 3.18 8.06 -2.91 -0.02 3.15 16 31 H 0.14 5.25 8.06 -2.91 -0.02 5.22 16 Total: -1.00 -59.55 286.77 2.83 -56.71 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 1.18 Total: 23.26 kcal Atomic # 6 Polarization: -40.30 SS G_CDS: 4.52 Total: -35.78 kcal Atomic # 7 Polarization: -81.15 SS G_CDS: -3.59 Total: -84.74 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.31 Total: 2.05 kcal Total: -59.55 2.83 -56.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242678332.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.718 kcal (2) G-P(sol) polarization free energy of solvation -59.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds