Wall clock time and date at job start Fri Apr 10 2020 14:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30712 * 1 3 3 Si 1.86805 * 119.99954 * 2 1 4 4 H 1.48500 * 109.46759 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46738 * 119.99965 * 3 2 1 6 6 H 1.48494 * 109.47297 * 240.00122 * 3 2 1 7 7 C 1.40125 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00068 * 0.02562 * 7 2 1 9 9 C 1.40769 * 120.00207 * 180.02562 * 7 2 1 10 10 N 1.33719 * 119.94378 * 351.22135 * 9 7 2 11 11 C 1.31267 * 121.63515 * 179.97438 * 10 9 7 12 12 C 1.39080 * 121.35164 * 0.02562 * 11 10 9 13 13 C 1.38356 * 119.72949 * 359.97438 * 12 11 10 14 14 C 1.39717 * 118.47794 * 359.74293 * 13 12 11 15 15 C 1.47756 * 120.65541 * 180.24535 * 14 13 12 16 16 C 1.40135 * 120.43539 * 130.28014 * 15 14 13 17 17 N 1.30987 * 120.85841 * 180.02562 * 16 15 14 18 18 C 1.33607 * 122.39460 * 359.97438 * 17 16 15 19 19 S 1.76057 * 130.10758 * 179.97438 * 18 17 16 20 20 C 1.75264 * 92.26722 * 180.02562 * 19 18 17 21 21 C 1.31725 * 111.49987 * 359.97438 * 20 19 18 22 22 C 1.40048 * 120.44486 * 359.97438 * 18 17 16 23 23 C 1.39259 * 120.43583 * 309.99797 * 15 14 13 24 24 H 0.96998 * 119.99616 * 175.12841 * 1 2 3 25 25 H 1.08000 * 119.32625 * 179.97438 * 11 10 9 26 26 H 1.07994 * 120.13091 * 180.02562 * 12 11 10 27 27 H 1.08006 * 120.75622 * 180.02562 * 13 12 11 28 28 H 1.07997 * 119.57009 * 359.97438 * 16 15 14 29 29 H 1.08006 * 124.24929 * 180.02562 * 20 19 18 30 30 H 1.08001 * 122.59011 * 179.97438 * 21 20 19 31 31 H 1.08005 * 120.69769 * 0.02741 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 1.2761 2.7464 0.0006 5 1 3.0948 1.6964 1.2125 6 1 3.0948 1.6965 -1.2124 7 6 2.0078 -1.2135 -0.0005 8 1 1.4678 -2.1489 -0.0014 9 6 3.4155 -1.2135 0.0000 10 7 4.0830 -0.0683 -0.1758 11 6 5.3951 -0.0299 -0.1807 12 6 6.1534 -1.1822 -0.0032 13 6 5.5203 -2.3982 0.1835 14 6 4.1235 -2.4275 0.1930 15 6 3.3980 -3.6989 0.3940 16 6 2.3721 -3.7882 1.3445 17 7 1.7239 -4.9112 1.5299 18 6 1.9978 -6.0189 0.8348 19 16 1.2663 -7.6183 0.9153 20 6 2.3202 -8.2398 -0.3397 21 6 3.1489 -7.3137 -0.7765 22 6 3.0075 -6.0163 -0.1356 23 6 3.7206 -4.8225 -0.3627 24 1 -0.4849 -0.8370 -0.0713 25 1 5.8961 0.9157 -0.3263 26 1 7.2319 -1.1278 -0.0103 27 1 6.0929 -3.3033 0.3233 28 1 2.1132 -2.9201 1.9325 29 1 2.2930 -9.2543 -0.7090 30 1 3.8777 -7.5036 -1.5506 31 1 4.5040 -4.7809 -1.1051 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242679668.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:52 Heat of formation + Delta-G solvation = 65.375905 kcal Electronic energy + Delta-G solvation = -18511.363165 eV Core-core repulsion = 15654.926469 eV Total energy + Delta-G solvation = -2856.436696 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.99187 -38.59108 -35.56214 -34.03199 -33.08672 -31.10985 -30.21924 -28.65130 -25.83593 -24.14399 -23.37960 -21.98069 -21.30476 -19.97015 -18.56651 -17.95230 -16.46826 -15.91008 -15.43962 -15.11205 -14.92894 -14.18944 -14.03673 -13.82765 -13.22045 -12.87464 -12.78858 -12.57802 -12.24596 -12.12336 -12.00261 -11.55606 -11.03129 -10.84615 -10.75145 -10.27872 -10.00732 -9.67361 -9.42823 -9.15128 -8.82811 -8.42978 -8.10625 -7.92148 -7.53938 -7.39238 -4.97350 0.82980 1.30226 1.47208 2.07785 2.34633 2.44207 2.50024 3.52374 3.58733 3.92407 4.08696 4.31307 4.46555 4.63903 4.94024 5.03107 5.25022 5.33438 5.40038 5.54771 5.65208 5.70614 5.86950 5.91887 6.12167 6.15675 6.33648 6.36657 6.58992 6.73022 6.93213 7.12172 7.21813 7.29281 7.47525 7.87206 8.06284 8.17290 8.42348 9.25307 9.80972 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.022537 B = 0.005572 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.108880 B = 5024.368788 C = 5987.732545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.041 3.959 3 Si 1.155 2.845 4 H -0.331 1.331 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.458 4.458 8 H 0.090 0.910 9 C 0.260 3.740 10 N -0.568 5.568 11 C 0.165 3.835 12 C -0.317 4.317 13 C -0.014 4.014 14 C -0.227 4.227 15 C -0.024 4.024 16 C 0.154 3.846 17 N -0.463 5.463 18 C 0.040 3.960 19 S 0.105 5.895 20 C -0.203 4.203 21 C -0.108 4.108 22 C -0.126 4.126 23 C -0.057 4.057 24 H 0.286 0.714 25 H 0.131 0.869 26 H 0.107 0.893 27 H 0.104 0.896 28 H 0.170 0.830 29 H 0.168 0.832 30 H 0.144 0.856 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.939 -10.482 -0.751 12.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.182 4.182 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.488 4.488 8 H 0.108 0.892 9 C 0.139 3.861 10 N -0.285 5.285 11 C 0.000 4.000 12 C -0.340 4.340 13 C -0.038 4.038 14 C -0.232 4.232 15 C -0.029 4.029 16 C -0.015 4.015 17 N -0.173 5.173 18 C -0.203 4.203 19 S 0.364 5.636 20 C -0.336 4.336 21 C -0.139 4.139 22 C -0.136 4.136 23 C -0.084 4.084 24 H 0.098 0.902 25 H 0.148 0.852 26 H 0.125 0.875 27 H 0.122 0.878 28 H 0.187 0.813 29 H 0.185 0.815 30 H 0.161 0.839 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.232 -9.067 0.648 9.647 hybrid contribution 2.422 -2.037 -1.507 3.505 sum 5.653 -11.104 -0.859 12.490 Atomic orbital electron populations 1.70630 1.08273 1.33120 1.28611 1.27963 0.95282 1.06335 0.88662 0.81810 0.70607 0.69245 0.79384 1.26396 1.21907 1.20806 1.20945 0.90512 0.96648 1.40685 0.89245 1.18509 0.93614 0.85930 0.88042 1.66571 1.09127 1.27794 1.25038 1.22270 0.89852 0.97013 0.90818 1.21089 0.98976 0.93805 1.20162 1.21022 0.92854 0.96791 0.93121 1.18935 0.92588 0.92330 1.19364 1.19478 0.95730 0.93093 0.94567 1.23195 0.90299 0.93676 0.94371 1.67104 1.27300 0.97901 1.24969 1.23451 0.99276 0.98555 0.99044 1.83993 1.39407 1.00409 1.39797 1.25012 1.01823 1.03619 1.03186 1.20778 1.00873 0.90985 1.01251 1.20012 0.99208 0.95181 0.99180 1.21473 0.98603 0.90216 0.98128 0.90211 0.85191 0.87488 0.87759 0.81285 0.81477 0.83866 0.84894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.57 13.65 55.56 0.76 -19.82 16 2 C 0.04 1.06 5.52 -17.32 -0.10 0.96 16 3 Si 1.16 27.04 25.51 -169.99 -4.34 22.70 16 4 H -0.33 -7.72 7.11 56.52 0.40 -7.32 16 5 H -0.29 -6.79 7.08 56.52 0.40 -6.39 16 6 H -0.28 -6.52 6.76 56.52 0.38 -6.14 16 7 C -0.46 -11.63 8.19 -37.92 -0.31 -11.94 16 8 H 0.09 2.31 5.85 -52.48 -0.31 2.00 16 9 C 0.26 6.29 6.39 -84.71 -0.54 5.75 16 10 N -0.57 -13.44 4.58 -10.90 -0.05 -13.49 16 11 C 0.17 3.34 11.17 -17.48 -0.20 3.14 16 12 C -0.32 -5.89 10.10 -39.23 -0.40 -6.29 16 13 C -0.01 -0.26 9.68 -38.99 -0.38 -0.64 16 14 C -0.23 -4.89 5.55 -104.07 -0.58 -5.46 16 15 C -0.02 -0.48 4.97 -104.92 -0.52 -1.00 16 16 C 0.15 3.18 8.83 -17.20 -0.15 3.03 16 17 N -0.46 -9.43 10.35 -11.36 -0.12 -9.55 16 18 C 0.04 0.73 7.65 -16.10 -0.12 0.61 16 19 S 0.10 1.50 23.23 -107.50 -2.50 -0.99 16 20 C -0.20 -2.41 11.01 28.85 0.32 -2.09 16 21 C -0.11 -1.43 10.39 -38.61 -0.40 -1.83 16 22 C -0.13 -2.14 6.05 -105.36 -0.64 -2.78 16 23 C -0.06 -1.01 9.74 -38.19 -0.37 -1.38 16 24 H 0.29 7.27 8.72 -40.82 -0.36 6.91 16 25 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 26 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 27 H 0.10 1.72 8.06 -52.48 -0.42 1.29 16 28 H 0.17 3.55 7.30 -52.49 -0.38 3.17 16 29 H 0.17 1.39 8.06 -52.48 -0.42 0.96 16 30 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 31 H 0.13 2.07 8.06 -52.48 -0.42 1.65 16 LS Contribution 283.72 15.07 4.28 4.28 Total: -1.00 -27.83 283.72 -8.75 -36.58 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -2.40 Total: 0.23 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -4.38 Total: -19.93 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.59 Total: -42.85 kcal Atomic # 14 Polarization: 27.04 SS G_CDS: -4.34 Total: 22.70 kcal Atomic # 16 Polarization: 1.50 SS G_CDS: -2.50 Total: -0.99 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.83 -8.75 -36.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242679668.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.952 kcal (2) G-P(sol) polarization free energy of solvation -27.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds