Wall clock time and date at job start Fri Apr 10 2020 14:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30712 * 1 3 3 Si 1.86805 * 119.99954 * 2 1 4 4 H 1.48500 * 109.46759 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46738 * 119.99965 * 3 2 1 6 6 H 1.48494 * 109.47297 * 240.00122 * 3 2 1 7 7 C 1.40125 * 120.00194 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00068 * 0.02562 * 7 2 1 9 9 C 1.40769 * 120.00207 * 180.02562 * 7 2 1 10 10 N 1.33719 * 119.94378 * 351.22135 * 9 7 2 11 11 C 1.31267 * 121.63515 * 179.97438 * 10 9 7 12 12 C 1.39080 * 121.35164 * 0.02562 * 11 10 9 13 13 C 1.38356 * 119.72949 * 359.97438 * 12 11 10 14 14 C 1.39717 * 118.47794 * 359.74293 * 13 12 11 15 15 C 1.47756 * 120.65541 * 180.24535 * 14 13 12 16 16 C 1.40135 * 120.43539 * 130.28014 * 15 14 13 17 17 N 1.30987 * 120.85841 * 180.02562 * 16 15 14 18 18 C 1.33607 * 122.39460 * 359.97438 * 17 16 15 19 19 S 1.76057 * 130.10758 * 179.97438 * 18 17 16 20 20 C 1.75264 * 92.26722 * 180.02562 * 19 18 17 21 21 C 1.31725 * 111.49987 * 359.97438 * 20 19 18 22 22 C 1.40048 * 120.44486 * 359.97438 * 18 17 16 23 23 C 1.39259 * 120.43583 * 309.99797 * 15 14 13 24 24 H 0.96998 * 119.99616 * 175.12841 * 1 2 3 25 25 H 1.08000 * 119.32625 * 179.97438 * 11 10 9 26 26 H 1.07994 * 120.13091 * 180.02562 * 12 11 10 27 27 H 1.08006 * 120.75622 * 180.02562 * 13 12 11 28 28 H 1.07997 * 119.57009 * 359.97438 * 16 15 14 29 29 H 1.08006 * 124.24929 * 180.02562 * 20 19 18 30 30 H 1.08001 * 122.59011 * 179.97438 * 21 20 19 31 31 H 1.08005 * 120.69769 * 0.02741 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3071 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 1.2761 2.7464 0.0006 5 1 3.0948 1.6964 1.2125 6 1 3.0948 1.6965 -1.2124 7 6 2.0078 -1.2135 -0.0005 8 1 1.4678 -2.1489 -0.0014 9 6 3.4155 -1.2135 0.0000 10 7 4.0830 -0.0683 -0.1758 11 6 5.3951 -0.0299 -0.1807 12 6 6.1534 -1.1822 -0.0032 13 6 5.5203 -2.3982 0.1835 14 6 4.1235 -2.4275 0.1930 15 6 3.3980 -3.6989 0.3940 16 6 2.3721 -3.7882 1.3445 17 7 1.7239 -4.9112 1.5299 18 6 1.9978 -6.0189 0.8348 19 16 1.2663 -7.6183 0.9153 20 6 2.3202 -8.2398 -0.3397 21 6 3.1489 -7.3137 -0.7765 22 6 3.0075 -6.0163 -0.1356 23 6 3.7206 -4.8225 -0.3627 24 1 -0.4849 -0.8370 -0.0713 25 1 5.8961 0.9157 -0.3263 26 1 7.2319 -1.1278 -0.0103 27 1 6.0929 -3.3033 0.3233 28 1 2.1132 -2.9201 1.9325 29 1 2.2930 -9.2543 -0.7090 30 1 3.8777 -7.5036 -1.5506 31 1 4.5040 -4.7809 -1.1051 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242679668.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:51 Heat of formation + Delta-G solvation = 49.853271 kcal Electronic energy + Delta-G solvation = -18512.036277 eV Core-core repulsion = 15654.926469 eV Total energy + Delta-G solvation = -2857.109808 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 282.052 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.43675 -40.19836 -36.78517 -35.84080 -34.62251 -32.79401 -31.62896 -30.08880 -27.54991 -25.58915 -24.73488 -23.48670 -22.88413 -21.30726 -20.39909 -19.23180 -17.93405 -17.43098 -16.87904 -16.71101 -16.33799 -15.63733 -15.46079 -15.25895 -14.73521 -14.53488 -14.32818 -14.14020 -13.71113 -13.62260 -13.48838 -12.81086 -12.64558 -12.56172 -11.97529 -11.89400 -11.68700 -11.35915 -11.22831 -10.60399 -10.38688 -9.90982 -9.73524 -9.51680 -9.26779 -8.86279 -6.80527 -0.46366 -0.12748 0.25920 0.71172 0.82047 0.98294 1.30040 1.61814 1.74012 2.07606 2.44523 2.61062 2.68237 3.38325 3.49133 3.66270 3.74467 3.93837 3.97867 4.19638 4.31740 4.42195 4.49179 4.62621 4.71791 4.78914 4.94554 5.12866 5.14624 5.27503 5.34416 5.39981 5.57539 5.67800 5.84298 6.00591 6.34165 6.62649 6.72171 7.54972 7.90537 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.022537 B = 0.005572 C = 0.004675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.108880 B = 5024.368788 C = 5987.732545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.014 3.986 3 Si 1.191 2.809 4 H -0.335 1.335 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.494 4.494 8 H 0.068 0.932 9 C 0.249 3.751 10 N -0.594 5.594 11 C 0.142 3.858 12 C -0.287 4.287 13 C -0.017 4.017 14 C -0.229 4.229 15 C -0.045 4.045 16 C 0.134 3.866 17 N -0.487 5.487 18 C 0.005 3.995 19 S 0.114 5.886 20 C -0.174 4.174 21 C -0.119 4.119 22 C -0.128 4.128 23 C -0.049 4.049 24 H 0.278 0.722 25 H 0.165 0.835 26 H 0.151 0.849 27 H 0.139 0.861 28 H 0.146 0.854 29 H 0.215 0.785 30 H 0.181 0.819 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.404 -13.104 -2.004 16.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.204 4.204 3 Si 1.023 2.977 4 H -0.269 1.269 5 H -0.221 1.221 6 H -0.205 1.205 7 C -0.525 4.525 8 H 0.087 0.913 9 C 0.126 3.874 10 N -0.312 5.312 11 C -0.019 4.019 12 C -0.309 4.309 13 C -0.041 4.041 14 C -0.234 4.234 15 C -0.051 4.051 16 C -0.035 4.035 17 N -0.197 5.197 18 C -0.238 4.238 19 S 0.374 5.626 20 C -0.308 4.308 21 C -0.148 4.148 22 C -0.139 4.139 23 C -0.076 4.076 24 H 0.089 0.911 25 H 0.182 0.818 26 H 0.168 0.832 27 H 0.157 0.843 28 H 0.164 0.836 29 H 0.232 0.768 30 H 0.199 0.801 31 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.738 -11.686 -0.604 13.503 hybrid contribution 1.611 -1.527 -1.116 2.485 sum 8.349 -13.213 -1.720 15.725 Atomic orbital electron populations 1.70669 1.08727 1.32474 1.32679 1.28643 0.95483 1.08097 0.88139 0.81323 0.69737 0.67441 0.79155 1.26946 1.22076 1.20489 1.20755 0.91536 0.95710 1.44514 0.91343 1.18661 0.93424 0.87414 0.87925 1.66458 1.11075 1.27865 1.25831 1.22967 0.88914 0.99453 0.90607 1.21641 1.01084 0.92655 1.15562 1.21460 0.91871 0.98662 0.92144 1.19173 0.93959 0.91974 1.18289 1.19456 0.96258 0.93687 0.95663 1.22884 0.91532 0.93546 0.95510 1.67034 1.27846 0.98638 1.26196 1.24156 1.00650 0.99412 0.99544 1.84014 1.39809 0.97814 1.41006 1.25576 0.99269 1.05242 1.00690 1.21035 1.02490 0.88985 1.02315 1.20482 0.98102 0.96672 0.98651 1.21729 0.98761 0.89575 0.97563 0.91148 0.81773 0.83171 0.84282 0.83644 0.76808 0.80143 0.82237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.28 13.65 21.86 0.30 -45.98 16 2 C 0.01 0.74 5.52 85.32 0.47 1.21 16 3 Si 1.19 56.95 25.51 68.60 1.75 58.70 16 4 H -0.34 -15.98 7.11 99.48 0.71 -15.27 16 5 H -0.29 -13.79 7.08 99.48 0.70 -13.08 16 6 H -0.28 -12.88 6.76 99.48 0.67 -12.21 16 7 C -0.49 -26.75 8.19 23.35 0.19 -26.56 16 8 H 0.07 3.88 5.85 -2.91 -0.02 3.86 16 9 C 0.25 12.29 6.39 40.37 0.26 12.55 16 10 N -0.59 -27.83 4.58 -188.41 -0.86 -28.69 16 11 C 0.14 5.33 11.17 84.98 0.95 6.28 16 12 C -0.29 -9.38 10.10 22.50 0.23 -9.16 16 13 C -0.02 -0.60 9.68 22.66 0.22 -0.38 16 14 C -0.23 -9.77 5.55 -19.51 -0.11 -9.88 16 15 C -0.05 -1.86 4.97 -20.05 -0.10 -1.96 16 16 C 0.13 5.90 8.83 85.28 0.75 6.65 16 17 N -0.49 -20.77 10.35 -189.86 -1.97 -22.74 16 18 C 0.01 0.19 7.65 84.86 0.65 0.84 16 19 S 0.11 3.06 23.23 -56.49 -1.31 1.74 16 20 C -0.17 -3.32 11.01 67.11 0.74 -2.58 16 21 C -0.12 -2.61 10.39 23.41 0.24 -2.37 16 22 C -0.13 -4.11 6.05 -20.34 -0.12 -4.23 16 23 C -0.05 -1.67 9.74 23.17 0.23 -1.44 16 24 H 0.28 15.45 8.72 -92.71 -0.81 14.64 16 25 H 0.17 4.91 8.06 -2.91 -0.02 4.88 16 26 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 27 H 0.14 3.89 8.06 -2.91 -0.02 3.87 16 28 H 0.15 6.85 7.30 -2.91 -0.02 6.83 16 29 H 0.22 2.09 8.06 -2.91 -0.02 2.07 16 30 H 0.18 2.65 8.06 -2.91 -0.02 2.63 16 31 H 0.16 4.42 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -65.31 283.72 3.60 -61.71 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: 1.10 Total: 6.26 kcal Atomic # 6 Polarization: -35.60 SS G_CDS: 4.59 Total: -31.01 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -2.53 Total: -97.41 kcal Atomic # 14 Polarization: 56.95 SS G_CDS: 1.75 Total: 58.70 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -1.31 Total: 1.74 kcal Total: -65.31 3.60 -61.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242679668.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.563 kcal (2) G-P(sol) polarization free energy of solvation -65.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds