Wall clock time and date at job start Fri Apr 10 2020 14:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47352 * 269.83434 * 3 2 1 5 5 N 1.46498 * 109.47196 * 180.02562 * 4 3 2 6 6 C 1.46502 * 119.99445 * 270.84919 * 5 4 3 7 7 C 1.50704 * 109.46860 * 262.18933 * 6 5 4 8 8 H 1.08003 * 119.99977 * 0.02562 * 7 6 5 9 9 C 1.37871 * 119.99700 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00355 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99637 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47280 * 0.02562 * 11 9 7 13 13 H 1.48509 * 109.46957 * 120.00423 * 11 9 7 14 14 H 1.48502 * 109.47107 * 239.99775 * 11 9 7 15 15 C 1.34773 * 120.00020 * 90.84737 * 5 4 3 16 16 O 1.21632 * 119.99993 * 1.38765 * 15 5 4 17 17 C 1.47214 * 119.99981 * 181.38863 * 15 5 4 18 18 C 1.47086 * 127.20239 * 351.30563 * 17 15 5 19 19 C 1.34120 * 105.97114 * 179.97438 * 18 17 15 20 20 O 1.34288 * 109.17994 * 359.97438 * 19 18 17 21 21 C 1.33685 * 110.91260 * 0.02562 * 20 19 18 22 22 Cl 1.73597 * 125.82541 * 180.25883 * 21 20 19 23 23 H 1.09002 * 109.46483 * 149.83846 * 3 2 1 24 24 H 1.08996 * 109.47237 * 29.84082 * 3 2 1 25 25 H 1.09002 * 109.46891 * 60.00175 * 4 3 2 26 26 H 1.08998 * 109.46818 * 300.00853 * 4 3 2 27 27 H 1.08995 * 109.47661 * 22.19664 * 6 5 4 28 28 H 1.09004 * 109.46669 * 142.19790 * 6 5 4 29 29 H 0.96999 * 119.99643 * 180.02562 * 10 9 7 30 30 H 1.07995 * 127.01734 * 0.02562 * 18 17 15 31 31 H 1.08003 * 125.41251 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 0.0051 1.4425 5 7 4.5830 0.0063 1.4424 6 6 5.3165 -1.2618 1.4271 7 6 5.7352 -1.6169 2.8306 8 1 5.4800 -0.9635 3.6518 9 6 6.4440 -2.7758 3.0661 10 7 6.7551 -3.5711 2.0659 11 14 6.9623 -3.2163 4.8059 12 1 6.4924 -2.1651 5.7436 13 1 6.3635 -4.5212 5.1854 14 1 8.4427 -3.3132 4.8717 15 6 5.2559 1.1740 1.4565 16 8 4.6471 2.2263 1.4947 17 6 6.7277 1.1758 1.4255 18 6 7.6214 0.0149 1.5559 19 6 8.8694 0.4981 1.4672 20 8 8.8161 1.8291 1.2966 21 6 7.5496 2.2562 1.2687 22 17 7.0366 3.9016 1.0610 23 1 2.9708 0.8894 -0.5164 24 1 2.9717 -0.8905 -0.5113 25 1 2.7551 -0.8836 1.9588 26 1 2.7542 0.8963 1.9537 27 1 4.6749 -2.0480 1.0294 28 1 6.2013 -1.1621 0.7983 29 1 7.2535 -4.3866 2.2318 30 1 7.3318 -1.0163 1.6938 31 1 9.7736 -0.0898 1.5233 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192394403.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:35 Heat of formation + Delta-G solvation = 10.261425 kcal Electronic energy + Delta-G solvation = -19689.351882 eV Core-core repulsion = 16385.339522 eV Total energy + Delta-G solvation = -3304.012360 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.056 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.44875 -40.58633 -38.02647 -37.85508 -36.88069 -34.98976 -33.87790 -32.15704 -30.42762 -29.05292 -26.08381 -25.03065 -23.23091 -22.28442 -20.39195 -18.94499 -18.46331 -18.16499 -17.66960 -17.28037 -16.89291 -16.31685 -15.94952 -15.68245 -15.39920 -14.65344 -14.60375 -14.29635 -14.20103 -13.78759 -13.56450 -13.48439 -13.12694 -12.95919 -12.75555 -12.69309 -12.19345 -12.14597 -11.93197 -11.63772 -11.59683 -10.86262 -10.74907 -10.42444 -9.65111 -9.34993 -8.14573 -6.24146 0.12733 0.21783 1.29460 1.44740 1.52357 1.59071 1.67202 1.79785 2.23101 2.40216 2.50292 2.62853 3.15973 3.18343 3.76469 3.96583 4.14288 4.17364 4.51836 4.56675 4.66834 4.89096 4.96614 5.05707 5.08030 5.36761 5.64647 5.76182 5.87301 6.00211 6.13564 6.53010 6.56245 6.87170 7.31665 7.45335 8.89007 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.009751 B = 0.009073 C = 0.005119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2870.946981 B = 3085.285676 C = 5468.812186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.246 3.754 3 C -0.031 4.031 4 C 0.123 3.877 5 N -0.586 5.586 6 C 0.227 3.773 7 C -0.535 4.535 8 H 0.047 0.953 9 C 0.038 3.962 10 N -0.906 5.906 11 Si 0.936 3.064 12 H -0.281 1.281 13 H -0.284 1.284 14 H -0.273 1.273 15 C 0.583 3.417 16 O -0.572 6.572 17 C -0.213 4.213 18 C -0.188 4.188 19 C -0.037 4.037 20 O -0.173 6.173 21 C 0.073 3.927 22 Cl 0.051 6.949 23 H 0.120 0.880 24 H 0.133 0.867 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.039 0.961 28 H 0.056 0.944 29 H 0.270 0.730 30 H 0.209 0.791 31 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.749 5.628 -3.602 8.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.071 4.071 3 C -0.072 4.072 4 C -0.001 4.001 5 N -0.315 5.315 6 C 0.107 3.893 7 C -0.574 4.574 8 H 0.065 0.935 9 C -0.163 4.163 10 N -0.545 5.545 11 Si 0.763 3.237 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.373 3.627 16 O -0.455 6.455 17 C -0.218 4.218 18 C -0.206 4.206 19 C -0.102 4.102 20 O -0.071 6.071 21 C -0.007 4.007 22 Cl 0.080 6.920 23 H 0.138 0.862 24 H 0.151 0.849 25 H 0.109 0.891 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.225 0.775 31 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 3.018 6.288 -3.676 7.884 hybrid contribution 0.524 -0.435 1.104 1.297 sum 3.542 5.854 -2.571 7.309 Atomic orbital electron populations 1.81209 1.14301 1.11215 1.10083 1.29204 0.95056 0.91174 0.91685 1.19716 0.80085 1.07593 0.99804 1.21241 0.79662 1.04088 0.95145 1.47876 1.06139 1.06993 1.70492 1.19927 0.93227 0.79716 0.96474 1.21565 1.35348 1.06387 0.94051 0.93516 1.25306 0.95864 0.95757 0.99419 1.69960 1.39530 1.13374 1.31635 0.85838 0.78490 0.77711 0.81671 1.20590 1.21053 1.19836 1.17262 0.85824 0.83586 0.76033 1.90723 1.69910 1.31669 1.53211 1.21194 0.94591 0.92954 1.13097 1.24752 0.91263 1.02402 1.02177 1.24741 1.01391 0.78034 1.06034 1.83662 1.26209 1.25905 1.71303 1.22596 0.83256 0.88732 1.06091 1.98430 1.86796 1.11570 1.95224 0.86197 0.84925 0.89094 0.90324 0.94280 0.92627 0.92046 0.77471 0.73410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.68 18.54 20.01 0.37 -15.31 16 2 C 0.25 6.58 15.43 89.44 1.38 7.96 16 3 C -0.03 -0.72 6.03 28.79 0.17 -0.55 16 4 C 0.12 3.67 5.35 86.38 0.46 4.13 16 5 N -0.59 -21.09 2.48 -830.28 -2.06 -23.15 16 6 C 0.23 9.03 4.70 85.63 0.40 9.43 16 7 C -0.53 -24.08 7.09 25.60 0.18 -23.90 16 8 H 0.05 2.26 7.81 -2.91 -0.02 2.24 16 9 C 0.04 1.74 4.75 84.65 0.40 2.14 16 10 N -0.91 -42.41 13.21 21.45 0.28 -42.13 16 11 Si 0.94 37.79 29.54 68.60 2.03 39.81 16 12 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 13 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 14 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 15 C 0.58 22.52 7.59 86.60 0.66 23.18 16 16 O -0.57 -23.19 15.26 -4.13 -0.06 -23.25 16 17 C -0.21 -7.95 6.09 -18.97 -0.12 -8.06 16 18 C -0.19 -6.75 8.21 23.65 0.19 -6.55 16 19 C -0.04 -1.08 12.03 66.88 0.80 -0.27 16 20 O -0.17 -5.31 10.53 3.46 0.04 -5.27 16 21 C 0.07 2.46 7.98 67.45 0.54 2.99 16 22 Cl 0.05 1.54 27.96 -2.72 -0.08 1.46 16 23 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 24 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 25 H 0.09 2.66 8.08 -2.39 -0.02 2.64 16 26 H 0.08 2.45 7.37 -2.39 -0.02 2.43 16 27 H 0.04 1.58 8.01 -2.39 -0.02 1.56 16 28 H 0.06 2.29 4.75 -2.39 -0.01 2.28 16 29 H 0.27 12.13 8.31 -92.71 -0.77 11.36 16 30 H 0.21 8.40 3.10 -2.91 -0.01 8.39 16 31 H 0.25 4.89 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -54.95 295.86 6.79 -48.16 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 1.19 Total: 9.19 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 5.08 Total: 10.49 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -1.41 Total: -80.60 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.03 Total: -28.52 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.81 kcal Atomic # 17 Polarization: 1.54 SS G_CDS: -0.08 Total: 1.46 kcal Total: -54.95 6.79 -48.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192394403.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.419 kcal (2) G-P(sol) polarization free energy of solvation -54.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds