Wall clock time and date at job start Fri Apr 10 2020 14:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00182 * 2 1 4 4 H 1.48497 * 109.46879 * 270.00263 * 3 2 1 5 5 H 1.48501 * 109.46751 * 29.99858 * 3 2 1 6 6 H 1.48496 * 109.46913 * 150.00040 * 3 2 1 7 7 C 1.37880 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99958 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46845 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47172 * 179.97438 * 10 9 7 12 12 C 1.40349 * 120.00299 * 180.02562 * 11 10 9 13 13 N 1.34076 * 125.86184 * 359.97110 * 12 11 10 14 14 C 1.32480 * 109.24134 * 179.97438 * 13 12 11 15 15 S 1.76276 * 141.82648 * 180.02562 * 14 13 12 16 16 C 1.75783 * 90.69496 * 179.97438 * 15 14 13 17 17 C 1.30934 * 109.79832 * 359.97438 * 16 15 14 18 18 N 1.35059 * 108.95566 * 0.02562 * 14 13 12 19 19 C 1.34901 * 125.86247 * 179.97438 * 12 11 10 20 20 N 1.48740 * 126.51633 * 0.03999 * 19 12 11 21 21 O 1.21795 * 120.00034 * 269.97959 * 20 19 12 22 22 O 1.21808 * 120.00249 * 89.96943 * 20 19 12 23 23 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47623 * 59.99977 * 9 7 2 25 25 H 1.08998 * 109.47766 * 299.99679 * 9 7 2 26 26 H 1.08999 * 109.46747 * 60.00403 * 10 9 7 27 27 H 1.08996 * 109.47636 * 300.00320 * 10 9 7 28 28 H 0.97007 * 120.00113 * 0.02562 * 11 10 9 29 29 H 1.07996 * 125.09969 * 180.26419 * 16 15 14 30 30 H 1.07998 * 121.83970 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.2143 -6.1463 0.0018 13 7 3.5481 -6.2833 0.0014 14 6 3.8546 -7.5722 0.0028 15 16 5.2351 -8.6683 0.0040 16 6 4.1588 -10.0581 0.0064 17 6 2.9132 -9.6545 0.0067 18 7 2.7134 -8.2945 0.0036 19 6 1.6626 -7.3774 0.0029 20 7 0.2098 -7.6961 0.0028 21 8 -0.3853 -7.8259 1.0575 22 8 -0.3849 -7.8272 -1.0521 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6239 -2.5568 0.8903 26 1 2.8717 -3.6043 0.8906 27 1 2.8719 -3.6044 -0.8894 28 1 0.5426 -4.9308 0.0011 29 1 4.4771 -11.0901 0.0119 30 1 2.0884 -10.3516 0.0076 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273391583.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:45 Heat of formation + Delta-G solvation = 106.765435 kcal Electronic energy + Delta-G solvation = -18989.307451 eV Core-core repulsion = 15723.816277 eV Total energy + Delta-G solvation = -3265.491174 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.057 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.24887 -41.80656 -37.70006 -36.56847 -35.36118 -33.00642 -31.59302 -30.48034 -28.56928 -26.08869 -24.89060 -24.19017 -21.67516 -21.59467 -20.81084 -19.44769 -18.89853 -17.88322 -17.48098 -16.80666 -16.60201 -16.17501 -15.72083 -14.96230 -14.49245 -14.20064 -13.94696 -13.85053 -12.64099 -12.30108 -11.88781 -11.75555 -11.53485 -11.28575 -11.21068 -11.16147 -11.05259 -10.71213 -10.66183 -10.57344 -9.88320 -9.67681 -9.34613 -8.46843 -8.35812 -7.79373 -6.11174 -4.15099 0.13777 0.33432 0.41537 0.88796 1.17004 1.54026 2.14799 2.52432 3.28326 3.29882 3.35246 3.39879 3.87994 4.35191 4.41809 4.64959 4.75880 5.13760 5.25741 5.47486 5.82962 6.10092 6.23484 6.35661 6.63493 6.82757 7.17700 7.53230 7.53322 7.55651 7.77608 7.88074 8.24504 8.90258 9.49835 11.00475 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.022404 B = 0.003978 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.493796 B = 7036.984404 C = 8147.791823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.133 3.867 11 N -0.699 5.699 12 C 0.434 3.566 13 N -0.468 5.468 14 C 0.211 3.789 15 S 0.238 5.762 16 C -0.230 4.230 17 C 0.057 3.943 18 N -0.384 5.384 19 C -0.100 4.100 20 N 0.056 4.944 21 O -0.125 6.125 22 O -0.126 6.126 23 H 0.263 0.737 24 H 0.024 0.976 25 H 0.024 0.976 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.411 0.589 29 H 0.205 0.795 30 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.733 -22.439 0.024 24.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.026 4.026 10 C 0.012 3.988 11 N -0.331 5.331 12 C 0.197 3.803 13 N -0.202 5.202 14 C -0.156 4.156 15 S 0.487 5.513 16 C -0.369 4.369 17 C -0.073 4.073 18 N -0.071 5.071 19 C -0.295 4.295 20 N 0.589 4.411 21 O -0.349 6.349 22 O -0.349 6.349 23 H 0.073 0.927 24 H 0.042 0.958 25 H 0.042 0.958 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.248 0.752 29 H 0.222 0.778 30 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 11.268 -21.160 0.026 23.974 hybrid contribution -2.469 -0.116 -0.011 2.472 sum 8.799 -21.276 0.015 23.024 Atomic orbital electron populations 1.69961 1.06126 1.27000 1.49960 1.25007 0.94899 0.99466 0.94885 0.86484 0.79792 0.82902 0.78214 1.20521 1.21117 1.19697 1.20975 0.93189 0.90107 1.51849 0.92140 1.19344 0.94253 0.90915 0.98104 1.21863 0.95986 0.80052 1.00913 1.44971 1.08144 1.01396 1.78581 1.17014 0.87663 0.84206 0.91466 1.70752 1.09850 1.11636 1.27970 1.26392 0.91377 0.92187 1.05656 1.85012 0.97673 0.88996 1.79661 1.25090 0.94315 1.05073 1.12400 1.20426 1.00051 0.81952 1.04853 1.42819 1.05570 1.05180 1.53527 1.20032 0.77373 0.88058 1.43988 1.42388 1.00724 0.97777 1.00194 1.94571 1.67668 1.51524 1.21136 1.94575 1.67698 1.51526 1.21123 0.92734 0.95804 0.95782 0.92294 0.92288 0.75224 0.77826 0.80113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.14 16 10 C 0.13 2.84 5.99 -4.04 -0.02 2.82 16 11 N -0.70 -13.42 5.78 -60.75 -0.35 -13.77 16 12 C 0.43 7.89 7.71 -153.76 -1.19 6.70 16 13 N -0.47 -8.16 10.99 -12.53 -0.14 -8.30 16 14 C 0.21 2.92 8.92 -88.68 -0.79 2.13 16 15 S 0.24 1.92 23.37 -107.50 -2.51 -0.60 16 16 C -0.23 -1.32 11.11 29.03 0.32 -1.00 16 17 C 0.06 0.50 11.26 -16.73 -0.19 0.31 16 18 N -0.38 -5.20 3.20 -59.97 -0.19 -5.39 16 19 C -0.10 -1.67 8.06 -139.84 -1.13 -2.80 16 20 N 0.06 0.93 4.48 33.78 0.15 1.08 16 21 O -0.13 -2.11 19.26 -29.46 -0.57 -2.68 16 22 O -0.13 -2.12 19.26 -29.46 -0.57 -2.69 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.41 7.66 8.60 -40.82 -0.35 7.31 16 29 H 0.20 0.30 8.06 -52.49 -0.42 -0.12 16 30 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 296.54 15.07 4.47 4.47 Total: -1.00 -32.25 296.54 -9.97 -42.22 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -2.43 Total: -0.15 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -3.55 Total: -4.92 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.21 Total: -52.02 kcal Atomic # 8 Polarization: -4.23 SS G_CDS: -1.14 Total: -5.36 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.51 Total: -0.60 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.25 -9.97 -42.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273391583.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.987 kcal (2) G-P(sol) polarization free energy of solvation -32.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds