Wall clock time and date at job start Fri Apr 10 2020 14:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00182 * 2 1 4 4 H 1.48497 * 109.46879 * 270.00263 * 3 2 1 5 5 H 1.48501 * 109.46751 * 29.99858 * 3 2 1 6 6 H 1.48496 * 109.46913 * 150.00040 * 3 2 1 7 7 C 1.37880 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99958 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46845 * 179.97438 * 9 7 2 11 11 N 1.46501 * 109.47172 * 179.97438 * 10 9 7 12 12 C 1.40349 * 120.00299 * 180.02562 * 11 10 9 13 13 N 1.34076 * 125.86184 * 359.97110 * 12 11 10 14 14 C 1.32480 * 109.24134 * 179.97438 * 13 12 11 15 15 S 1.76276 * 141.82648 * 180.02562 * 14 13 12 16 16 C 1.75783 * 90.69496 * 179.97438 * 15 14 13 17 17 C 1.30934 * 109.79832 * 359.97438 * 16 15 14 18 18 N 1.35059 * 108.95566 * 0.02562 * 14 13 12 19 19 C 1.34901 * 125.86247 * 179.97438 * 12 11 10 20 20 N 1.48740 * 126.51633 * 0.03999 * 19 12 11 21 21 O 1.21795 * 120.00034 * 269.97959 * 20 19 12 22 22 O 1.21808 * 120.00249 * 89.96943 * 20 19 12 23 23 H 0.96999 * 119.99910 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47623 * 59.99977 * 9 7 2 25 25 H 1.08998 * 109.47766 * 299.99679 * 9 7 2 26 26 H 1.08999 * 109.46747 * 60.00403 * 10 9 7 27 27 H 1.08996 * 109.47636 * 300.00320 * 10 9 7 28 28 H 0.97007 * 120.00113 * 0.02562 * 11 10 9 29 29 H 1.07996 * 125.09969 * 180.26419 * 16 15 14 30 30 H 1.07998 * 121.83970 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5127 -4.9308 0.0012 12 6 2.2143 -6.1463 0.0018 13 7 3.5481 -6.2833 0.0014 14 6 3.8546 -7.5722 0.0028 15 16 5.2351 -8.6683 0.0040 16 6 4.1588 -10.0581 0.0064 17 6 2.9132 -9.6545 0.0067 18 7 2.7134 -8.2945 0.0036 19 6 1.6626 -7.3774 0.0029 20 7 0.2098 -7.6961 0.0028 21 8 -0.3853 -7.8259 1.0575 22 8 -0.3849 -7.8272 -1.0521 23 1 -0.4850 0.8400 -0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6239 -2.5568 0.8903 26 1 2.8717 -3.6043 0.8906 27 1 2.8719 -3.6044 -0.8894 28 1 0.5426 -4.9308 0.0011 29 1 4.4771 -11.0901 0.0119 30 1 2.0884 -10.3516 0.0076 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273391583.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:43 Heat of formation + Delta-G solvation = 88.001136 kcal Electronic energy + Delta-G solvation = -18990.121132 eV Core-core repulsion = 15723.816277 eV Total energy + Delta-G solvation = -3266.304855 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.057 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -44.33386 -43.07871 -38.82535 -37.89350 -36.80621 -34.95843 -32.72518 -32.00924 -29.98648 -27.41832 -26.50131 -25.34058 -23.20374 -22.88781 -22.14681 -20.48333 -20.21764 -19.04492 -18.61831 -18.56224 -17.66894 -17.63002 -16.97880 -16.46849 -15.88185 -15.66873 -15.35751 -14.65707 -14.27383 -13.90844 -13.32039 -13.09138 -12.94618 -12.87955 -12.55486 -12.53081 -12.46002 -12.38511 -12.00972 -11.79901 -11.66535 -11.43136 -11.24818 -10.61802 -9.17737 -9.15284 -8.26729 -6.38885 -1.03090 -0.57076 -0.55844 -0.28457 0.45050 0.75178 1.11344 1.28208 1.40970 1.42359 1.53876 2.01948 2.40537 2.85260 3.08145 3.45753 3.85255 4.06110 4.28514 4.33881 4.41604 4.65033 4.72883 4.76320 5.20890 5.30335 5.48094 5.58956 5.72543 5.89890 6.07612 6.20494 6.43473 6.75219 7.31025 8.85824 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.022404 B = 0.003978 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.493796 B = 7036.984404 C = 8147.791823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.020 3.980 10 C 0.161 3.839 11 N -0.710 5.710 12 C 0.414 3.586 13 N -0.511 5.511 14 C 0.187 3.813 15 S 0.301 5.699 16 C -0.180 4.180 17 C 0.011 3.989 18 N -0.381 5.381 19 C -0.110 4.110 20 N 0.060 4.940 21 O -0.132 6.132 22 O -0.133 6.133 23 H 0.266 0.734 24 H 0.002 0.998 25 H 0.002 0.998 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.409 0.591 29 H 0.260 0.740 30 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.316 -24.677 0.024 27.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.795 3.205 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.582 4.582 8 H 0.084 0.916 9 C -0.017 4.017 10 C 0.038 3.962 11 N -0.345 5.345 12 C 0.177 3.823 13 N -0.246 5.246 14 C -0.178 4.178 15 S 0.550 5.450 16 C -0.317 4.317 17 C -0.116 4.116 18 N -0.067 5.067 19 C -0.306 4.306 20 N 0.592 4.408 21 O -0.356 6.356 22 O -0.356 6.356 23 H 0.075 0.925 24 H 0.020 0.980 25 H 0.021 0.979 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.245 0.755 29 H 0.276 0.724 30 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 13.886 -23.495 0.025 27.292 hybrid contribution -3.116 0.299 -0.012 3.130 sum 10.771 -23.196 0.014 25.574 Atomic orbital electron populations 1.70091 1.07862 1.28136 1.50858 1.25975 0.95790 1.03480 0.94230 0.85346 0.78621 0.77894 0.78594 1.19646 1.20651 1.18560 1.21407 0.93750 0.91315 1.51774 0.91560 1.19151 0.94395 0.92298 0.95905 1.21292 0.94531 0.79945 1.00394 1.44610 1.07891 1.01452 1.80499 1.17088 0.88465 0.83967 0.92775 1.70653 1.09332 1.14099 1.30490 1.27396 0.93639 0.91830 1.04961 1.85004 0.95267 0.87674 1.77094 1.25882 0.92411 1.06598 1.06851 1.21018 1.02248 0.80151 1.08151 1.43076 1.04302 1.06699 1.52626 1.19988 0.77476 0.88723 1.44365 1.42425 1.00991 0.97375 0.99988 1.94556 1.67970 1.51821 1.21219 1.94559 1.68002 1.51838 1.21207 0.92511 0.97971 0.97947 0.92743 0.92717 0.75474 0.72423 0.78060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 82. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.39 13.29 21.45 0.28 -56.11 16 2 C 0.00 0.22 5.46 84.66 0.46 0.68 16 3 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.54 -30.95 9.11 25.60 0.23 -30.72 16 8 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 9 C 0.02 1.07 5.09 29.85 0.15 1.22 16 10 C 0.16 7.21 5.99 86.38 0.52 7.73 16 11 N -0.71 -28.91 5.78 -346.10 -2.00 -30.91 16 12 C 0.41 15.60 7.71 131.11 1.01 16.61 16 13 N -0.51 -18.08 10.99 -193.56 -2.13 -20.21 16 14 C 0.19 4.96 8.92 179.67 1.60 6.56 16 15 S 0.30 3.69 23.37 -56.49 -1.32 2.37 16 16 C -0.18 -1.11 11.11 67.85 0.75 -0.35 16 17 C 0.01 0.16 11.26 83.84 0.94 1.10 16 18 N -0.38 -9.85 3.20 -343.66 -1.10 -10.95 16 19 C -0.11 -3.72 8.06 126.25 1.02 -2.71 16 20 N 0.06 2.04 4.48 -47.03 -0.21 1.83 16 21 O -0.13 -4.55 19.26 18.89 0.36 -4.19 16 22 O -0.13 -4.58 19.26 18.88 0.36 -4.22 16 23 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 24 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 25 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 26 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.41 16.41 8.60 -92.70 -0.80 15.61 16 29 H 0.26 -1.25 8.06 -2.91 -0.02 -1.28 16 30 H 0.20 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -73.82 296.54 3.38 -70.44 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 0.41 Total: 5.70 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: 6.69 Total: 0.12 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -5.15 Total: -116.35 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.73 Total: -8.41 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.32 Total: 2.37 kcal Total: -73.82 3.38 -70.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273391583.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.439 kcal (2) G-P(sol) polarization free energy of solvation -73.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds