Wall clock time and date at job start Fri Apr 10 2020 14:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.31160 * 120.00173 * 2 1 4 4 Cl 1.73600 * 120.00286 * 179.97438 * 3 2 1 5 5 C 1.50702 * 120.00148 * 179.97438 * 2 1 3 6 6 S 1.81397 * 109.47141 * 285.00321 * 5 2 1 7 7 C 1.81406 * 102.99914 * 179.97438 * 6 5 2 8 8 C 1.50700 * 109.47351 * 179.97438 * 7 6 5 9 9 C 1.38628 * 119.74792 * 269.73096 * 8 7 6 10 10 C 1.37624 * 120.24670 * 179.71836 * 9 8 7 11 11 C 1.40721 * 119.74114 * 0.57239 * 10 9 8 12 12 C 1.41396 * 120.24096 * 179.67992 * 11 10 9 13 13 H 1.07995 * 119.99673 * 204.40221 * 12 11 10 14 14 C 1.39949 * 120.00071 * 24.40909 * 12 11 10 15 15 N 1.30825 * 119.99943 * 17.84386 * 14 12 11 16 16 Si 1.86799 * 119.99752 * 197.84841 * 14 12 11 17 17 H 1.48500 * 109.47363 * 89.99534 * 16 14 12 18 18 H 1.48500 * 109.46936 * 209.99820 * 16 14 12 19 19 H 1.48507 * 109.46987 * 329.99347 * 16 14 12 20 20 C 1.40711 * 119.51199 * 359.69841 * 11 10 9 21 21 C 1.37615 * 119.74717 * 0.02562 * 20 11 10 22 22 H 1.09005 * 109.47000 * 90.00357 * 1 2 3 23 23 H 1.09000 * 109.47233 * 210.00466 * 1 2 3 24 24 H 1.09007 * 109.47238 * 330.00540 * 1 2 3 25 25 H 1.08006 * 119.99705 * 359.71386 * 3 2 1 26 26 H 1.09000 * 109.46700 * 45.00115 * 5 2 1 27 27 H 1.09005 * 109.47040 * 164.99967 * 5 2 1 28 28 H 1.09002 * 109.47168 * 300.00350 * 7 6 5 29 29 H 1.09004 * 109.46821 * 60.00041 * 7 6 5 30 30 H 1.08000 * 119.88275 * 359.97438 * 9 8 7 31 31 H 1.07998 * 120.12719 * 180.27705 * 10 9 8 32 32 H 0.96996 * 119.99718 * 180.02562 * 15 14 12 33 33 H 1.08002 * 120.12629 * 179.97438 * 20 11 10 34 34 H 1.08006 * 119.88114 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1628 1.1359 0.0000 4 17 3.8988 1.1359 0.0007 5 6 2.2605 -1.3051 0.0006 6 16 2.1795 -2.0494 1.6528 7 6 3.1259 -3.5844 1.4558 8 6 3.1523 -4.3299 2.7652 9 6 4.1746 -4.0932 3.6711 10 6 4.2055 -4.7640 4.8724 11 6 3.2009 -5.7020 5.1742 12 6 3.2261 -6.4022 6.4024 13 1 2.7345 -7.3599 6.4881 14 6 3.8881 -5.8540 7.5069 15 7 4.1767 -4.5782 7.5296 16 14 4.3596 -6.9441 8.9487 17 1 5.7178 -7.5012 8.7247 18 1 4.3534 -6.1420 10.1984 19 1 3.3822 -8.0557 9.0691 20 6 2.1713 -5.9383 4.2446 21 6 2.1573 -5.2517 3.0521 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3634 -0.8899 0.5139 24 1 -0.3634 0.8901 0.5138 25 1 1.6228 2.0712 -0.0047 26 1 1.8129 -1.9834 -0.7258 27 1 3.3019 -1.1235 -0.2655 28 1 2.6563 -4.2054 0.6930 29 1 4.1457 -3.3461 1.1532 30 1 4.9474 -3.3766 3.4351 31 1 5.0004 -4.5748 5.5786 32 1 4.6358 -4.1984 8.2949 33 1 1.3955 -6.6563 4.4659 34 1 1.3683 -5.4317 2.3368 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797809904.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:35 Heat of formation + Delta-G solvation = -5.006388 kcal Electronic energy + Delta-G solvation = -16370.118319 eV Core-core repulsion = 13611.737111 eV Total energy + Delta-G solvation = -2758.381207 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 282.054 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.48722 -38.10085 -36.21830 -35.85154 -33.01866 -31.21032 -29.52404 -28.83954 -27.88124 -25.69723 -22.92344 -21.93634 -19.86345 -19.24648 -17.40899 -17.10944 -16.48184 -16.19656 -15.95616 -15.66672 -15.65001 -15.29515 -14.35367 -13.96104 -13.90839 -13.80923 -13.41377 -13.14905 -13.03353 -12.97594 -12.85276 -12.74684 -12.71557 -12.27494 -12.15834 -11.64340 -11.48317 -11.29809 -11.10084 -10.88342 -9.73963 -9.39294 -9.18763 -8.66440 -8.54670 -6.35279 0.17787 0.88478 1.13093 1.34528 1.38625 1.43633 1.51755 1.66105 1.88291 2.19839 2.74911 3.62201 3.73748 3.88513 4.13663 4.16108 4.35690 4.50734 4.56393 4.58610 4.60186 4.67899 4.82525 4.96513 5.02773 5.13281 5.24771 5.33259 5.42319 5.47517 5.67569 5.91867 6.07605 6.17588 6.34900 6.66898 6.90845 7.00022 8.30118 Molecular weight = 282.05amu Principal moments of inertia in cm(-1) A = 0.029342 B = 0.003316 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.050004 B = 8441.086411 C = 8854.072689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.100 4.100 3 C -0.102 4.102 4 Cl -0.104 7.104 5 C -0.062 4.062 6 S -0.297 6.297 7 C 0.000 4.000 8 C -0.200 4.200 9 C -0.086 4.086 10 C -0.192 4.192 11 C 0.085 3.915 12 C -0.497 4.497 13 H 0.078 0.922 14 C 0.035 3.965 15 N -0.822 5.822 16 Si 0.984 3.016 17 H -0.261 1.261 18 H -0.268 1.268 19 H -0.257 1.257 20 C -0.244 4.244 21 C -0.070 4.070 22 H 0.094 0.906 23 H 0.067 0.933 24 H 0.081 0.919 25 H 0.177 0.823 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.289 0.711 33 H 0.100 0.900 34 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.642 8.778 -13.650 16.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.103 4.103 3 C -0.150 4.150 4 Cl -0.076 7.076 5 C -0.209 4.209 6 S -0.065 6.065 7 C -0.146 4.146 8 C -0.203 4.203 9 C -0.106 4.106 10 C -0.211 4.211 11 C 0.082 3.918 12 C -0.526 4.526 13 H 0.096 0.904 14 C -0.181 4.181 15 N -0.448 5.448 16 Si 0.805 3.195 17 H -0.186 1.186 18 H -0.192 1.192 19 H -0.180 1.180 20 C -0.263 4.263 21 C -0.089 4.089 22 H 0.112 0.888 23 H 0.086 0.914 24 H 0.100 0.900 25 H 0.194 0.806 26 H 0.120 0.880 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.100 0.900 33 H 0.118 0.882 34 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.916 9.364 -12.646 16.216 hybrid contribution 1.076 -0.828 -0.126 1.364 sum -2.840 8.536 -12.772 15.622 Atomic orbital electron populations 1.20836 0.88220 1.03885 1.03852 1.21568 0.97641 0.92218 0.98862 1.24658 0.83368 1.00553 1.06450 1.98356 1.13860 1.98697 1.96678 1.22528 1.03857 0.97866 0.96686 1.87636 1.72980 1.27452 1.18398 1.21936 1.01104 0.93855 0.97742 1.18757 1.00144 1.04171 0.97247 1.20743 0.97818 0.98189 0.93862 1.21257 1.00552 1.02609 0.96716 1.18002 0.90014 0.90997 0.92825 1.19916 1.31617 1.05618 0.95435 0.90369 1.26815 0.92640 0.96009 1.02625 1.69891 1.30020 1.13314 1.31525 0.85170 0.79660 0.78696 0.75993 1.18614 1.19241 1.18034 1.21168 1.00590 1.07025 0.97540 1.20677 0.96898 0.95394 0.95965 0.88790 0.91442 0.90013 0.80635 0.88020 0.89078 0.88992 0.90159 0.88026 0.88138 0.90032 0.88200 0.86372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 10.03 71.24 0.71 -1.00 16 2 C -0.10 -1.99 5.32 -16.65 -0.09 -2.08 16 3 C -0.10 -1.90 10.41 67.62 0.70 -1.19 16 4 Cl -0.10 -2.32 27.02 -2.72 -0.07 -2.39 16 5 C -0.06 -1.46 5.92 71.24 0.42 -1.04 16 6 S -0.30 -9.73 21.70 -56.49 -1.23 -10.96 16 7 C 0.00 0.01 6.06 71.24 0.43 0.44 16 8 C -0.20 -8.56 5.16 -19.68 -0.10 -8.66 16 9 C -0.09 -4.10 9.67 22.22 0.21 -3.89 16 10 C -0.19 -10.34 8.70 22.73 0.20 -10.15 16 11 C 0.08 4.65 5.58 -21.29 -0.12 4.53 16 12 C -0.50 -27.10 9.05 23.46 0.21 -26.89 16 13 H 0.08 4.10 7.91 -2.91 -0.02 4.07 16 14 C 0.03 1.76 5.14 85.26 0.44 2.20 16 15 N -0.82 -43.82 10.95 21.83 0.24 -43.58 16 16 Si 0.98 38.40 29.60 68.60 2.03 40.43 16 17 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 18 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 19 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 20 C -0.24 -12.11 9.80 22.73 0.22 -11.88 16 21 C -0.07 -3.05 9.67 22.22 0.21 -2.84 16 22 H 0.09 1.05 8.14 -2.38 -0.02 1.04 16 23 H 0.07 1.26 8.12 -2.39 -0.02 1.24 16 24 H 0.08 1.06 8.06 -2.38 -0.02 1.04 16 25 H 0.18 2.24 8.04 -2.91 -0.02 2.22 16 26 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.09 2.18 6.19 -2.39 -0.01 2.16 16 28 H 0.09 2.67 8.08 -2.39 -0.02 2.65 16 29 H 0.08 2.52 8.08 -2.39 -0.02 2.50 16 30 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 31 H 0.10 5.68 6.16 -2.91 -0.02 5.66 16 32 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 33 H 0.10 4.68 8.06 -2.91 -0.02 4.65 16 34 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -60.63 320.48 5.52 -55.11 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 1.09 Total: 23.85 kcal Atomic # 6 Polarization: -65.92 SS G_CDS: 3.46 Total: -62.46 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.24 Total: -43.58 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Atomic # 16 Polarization: -9.73 SS G_CDS: -1.23 Total: -10.96 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -0.07 Total: -2.39 kcal Total: -60.63 5.52 -55.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797809904.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.103 kcal (2) G-P(sol) polarization free energy of solvation -60.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds