Wall clock time and date at job start Fri Apr 10 2020 14:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46507 * 109.47248 * 271.38680 * 3 2 1 5 5 C 1.37100 * 119.99789 * 263.92858 * 4 3 2 6 6 H 1.07997 * 119.99481 * 199.75760 * 5 4 3 7 7 C 1.38945 * 120.00165 * 19.75063 * 5 4 3 8 8 N 1.31408 * 119.99814 * 21.75099 * 7 5 4 9 9 Si 1.86798 * 119.99972 * 201.74574 * 7 5 4 10 10 H 1.48493 * 109.47381 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47004 * 120.00382 * 9 7 5 12 12 H 1.48497 * 109.47300 * 240.00033 * 9 7 5 13 13 C 1.34776 * 119.99939 * 83.92603 * 4 3 2 14 14 O 1.21296 * 119.99997 * 180.02562 * 13 4 3 15 15 C 1.50700 * 120.00137 * 0.02562 * 13 4 3 16 16 C 1.50694 * 109.47164 * 180.02562 * 15 13 4 17 17 C 1.41285 * 128.01578 * 269.99883 * 16 15 13 18 18 C 1.50704 * 126.78264 * 0.05437 * 17 16 15 19 19 N 1.30207 * 106.42644 * 180.02562 * 17 16 15 20 20 O 1.20925 * 111.64795 * 359.97438 * 19 17 16 21 21 C 1.34064 * 111.54876 * 0.02562 * 20 19 17 22 22 Cl 1.73603 * 126.79500 * 179.97438 * 21 20 19 23 23 H 4.40647 * 5.51444 * 179.97438 * 4 1 2 24 24 H 1.08996 * 109.47355 * 151.38831 * 3 2 1 25 25 H 1.09000 * 109.46962 * 31.38362 * 3 2 1 26 26 H 0.97003 * 119.99966 * 179.97438 * 8 7 5 27 27 H 1.08996 * 109.47459 * 60.00080 * 15 13 4 28 28 H 1.09006 * 109.47457 * 300.00240 * 15 13 4 29 29 H 1.08995 * 109.47108 * 269.98331 * 18 17 16 30 30 H 1.08998 * 109.47192 * 29.98485 * 18 17 16 31 31 H 1.09003 * 109.46560 * 149.98626 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.0326 1.3809 5 6 3.4807 1.1333 2.0137 6 1 4.1240 1.1065 2.8807 7 6 3.0043 2.3493 1.5394 8 7 1.9233 2.3854 0.7931 9 14 3.9003 3.9327 1.9627 10 1 5.0802 3.6227 2.8094 11 1 4.3494 4.5967 0.7126 12 1 2.9840 4.8376 2.7020 13 6 3.2431 -1.2092 2.0291 14 8 3.6470 -1.2366 3.1725 15 6 2.8628 -2.4907 1.3333 16 6 3.0748 -3.6525 2.2694 17 6 4.2411 -4.4317 2.4390 18 6 5.5497 -4.2680 1.7097 19 7 3.9619 -5.3188 3.3503 20 8 2.8281 -5.2019 3.7541 21 6 2.1898 -4.1928 3.1445 22 17 0.5546 -3.6793 3.4200 23 1 -1.0500 0.0002 0.0000 24 1 3.0089 0.9029 -0.4921 25 1 3.0097 -0.8765 -0.5352 26 1 1.5904 3.2343 0.4623 27 1 3.4829 -2.6205 0.4464 28 1 1.8138 -2.4476 1.0400 29 1 5.5396 -4.8750 0.8045 30 1 5.6884 -3.2202 1.4431 31 1 6.3676 -4.5903 2.3542 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325130081.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:20 Heat of formation + Delta-G solvation = 92.658728 kcal Electronic energy + Delta-G solvation = -19800.240981 eV Core-core repulsion = 16499.801637 eV Total energy + Delta-G solvation = -3300.439345 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 282.056 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.79814 -38.76774 -36.96002 -35.52888 -34.76643 -32.38695 -31.85219 -31.25982 -28.85032 -28.28240 -26.43161 -24.57918 -21.94847 -21.22280 -19.16829 -17.94520 -17.63914 -17.38392 -16.65640 -16.12841 -15.23746 -14.62202 -14.50632 -14.04156 -13.53639 -13.27408 -12.86894 -12.72131 -12.55289 -12.50898 -12.29941 -12.10482 -11.87161 -11.60210 -11.39649 -11.04747 -10.66994 -10.51445 -10.35203 -9.77354 -9.42041 -9.29722 -9.02548 -8.96208 -8.43211 -7.90215 -6.37209 -3.91275 1.28399 1.49027 2.30622 3.10361 3.23566 3.29881 3.60696 3.81965 3.87914 3.99141 4.15505 4.24081 4.77930 4.91540 5.01938 5.08677 5.28964 5.40640 5.55261 5.66408 5.75092 5.80550 5.87693 6.04728 6.21099 6.30308 6.64851 6.97082 7.52922 8.00373 8.26274 8.37194 8.76638 9.08593 9.29623 9.84225 10.63372 Molecular weight = 282.06amu Principal moments of inertia in cm(-1) A = 0.020452 B = 0.005831 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.720815 B = 4800.422462 C = 5334.635701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.117 4.117 3 C 0.231 3.769 4 N -0.438 5.438 5 C -0.316 4.316 6 H 0.104 0.896 7 C 0.033 3.967 8 N -0.859 5.859 9 Si 0.918 3.082 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.283 1.283 13 C 0.455 3.545 14 O -0.573 6.573 15 C -0.065 4.065 16 C -0.128 4.128 17 C 0.042 3.958 18 C -0.075 4.075 19 N -0.356 5.356 20 O 0.102 5.898 21 C 0.004 3.996 22 Cl 0.046 6.954 23 H 0.199 0.801 24 H 0.107 0.893 25 H 0.063 0.937 26 H 0.268 0.732 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.131 -9.722 -3.974 10.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 C -0.119 4.119 3 C 0.108 3.892 4 N -0.157 5.157 5 C -0.443 4.443 6 H 0.121 0.879 7 C -0.172 4.172 8 N -0.497 5.497 9 Si 0.745 3.255 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.209 1.209 13 C 0.243 3.757 14 O -0.456 6.456 15 C -0.106 4.106 16 C -0.133 4.133 17 C -0.117 4.117 18 C -0.133 4.133 19 N -0.064 5.064 20 O 0.036 5.964 21 C -0.085 4.085 22 Cl 0.074 6.926 23 H 0.216 0.784 24 H 0.125 0.875 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.530 -10.500 -2.897 10.905 hybrid contribution -0.668 1.728 -0.204 1.864 sum -0.138 -8.772 -3.101 9.305 Atomic orbital electron populations 1.24263 0.95360 1.05960 1.01830 1.23119 0.94322 0.95825 0.98589 1.18243 0.84395 1.01593 0.85010 1.43671 1.56064 1.05578 1.10374 1.19663 1.28317 0.81923 1.14366 0.87856 1.25290 0.94971 0.99431 0.97465 1.70092 1.17834 1.26818 1.34913 0.85995 0.79800 0.81411 0.78306 1.19210 1.20583 1.20893 1.19747 0.84751 0.84304 0.86859 1.90558 1.50588 1.86576 1.17914 1.20047 1.03936 0.90094 0.96522 1.20292 0.91905 0.99847 1.01250 1.23206 0.98199 0.93342 0.96920 1.20197 0.90108 1.03990 0.98960 1.73838 0.95333 1.22774 1.14407 1.84830 1.18476 1.42041 1.51037 1.24390 0.91040 0.94672 0.98438 1.98442 1.11090 1.87273 1.95780 0.78438 0.87465 0.91891 0.92175 0.88511 0.88350 0.90077 0.89424 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.02 19.25 29.55 0.57 -4.45 16 2 C -0.12 -2.47 10.75 -37.12 -0.40 -2.87 16 3 C 0.23 4.75 4.91 -6.83 -0.03 4.71 16 4 N -0.44 -10.46 2.60 -117.93 -0.31 -10.77 16 5 C -0.32 -8.36 9.28 -14.93 -0.14 -8.50 16 6 H 0.10 2.92 7.42 -52.49 -0.39 2.53 16 7 C 0.03 0.84 4.83 -17.47 -0.08 0.75 16 8 N -0.86 -21.84 9.59 55.50 0.53 -21.31 16 9 Si 0.92 19.94 29.61 -169.99 -5.03 14.91 16 10 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 C 0.46 10.46 7.56 -10.99 -0.08 10.38 16 14 O -0.57 -15.34 15.70 5.54 0.09 -15.26 16 15 C -0.07 -1.15 4.71 -29.04 -0.14 -1.29 16 16 C -0.13 -2.25 4.82 -104.38 -0.50 -2.76 16 17 C 0.04 0.69 7.32 -82.12 -0.60 0.09 16 18 C -0.08 -0.95 10.39 36.01 0.37 -0.58 16 19 N -0.36 -6.15 12.07 33.44 0.40 -5.75 16 20 O 0.10 1.75 11.20 17.11 0.19 1.94 16 21 C 0.00 0.07 8.12 29.82 0.24 0.32 16 22 Cl 0.05 0.72 29.23 -51.86 -1.52 -0.80 16 23 H 0.20 3.18 7.80 -54.09 -0.42 2.76 16 24 H 0.11 2.33 6.60 -51.93 -0.34 1.99 16 25 H 0.06 1.03 6.69 -51.93 -0.35 0.68 16 26 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 27 H 0.10 1.39 7.42 -51.93 -0.39 1.00 16 28 H 0.10 1.68 7.49 -51.93 -0.39 1.29 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 299.42 15.07 4.51 4.51 Total: -1.00 -30.89 299.42 -4.60 -35.49 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -2.68 Total: 1.23 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -0.79 Total: -4.19 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.63 Total: -37.83 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.28 Total: -13.32 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Atomic # 17 Polarization: 0.72 SS G_CDS: -1.52 Total: -0.80 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.89 -4.60 -35.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325130081.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.146 kcal (2) G-P(sol) polarization free energy of solvation -30.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds