Wall clock time and date at job start Fri Apr 10 2020 15:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86808 * 120.00135 * 2 1 4 4 H 1.48506 * 109.46993 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46598 * 299.99496 * 3 2 1 6 6 H 1.48498 * 109.47173 * 59.99806 * 3 2 1 7 7 C 1.38799 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00419 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99752 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00083 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47023 * 179.97438 * 10 9 7 12 12 O 1.20818 * 120.00216 * 359.97438 * 11 10 9 13 13 O 1.34231 * 119.99727 * 179.97438 * 11 10 9 14 14 C 1.45200 * 116.99973 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47110 * 180.02562 * 14 13 11 16 16 O 1.42902 * 109.47386 * 64.99852 * 15 14 13 17 17 C 1.35898 * 116.99694 * 180.02562 * 16 15 14 18 18 C 1.38735 * 120.05254 * 179.97438 * 17 16 15 19 19 C 1.38144 * 119.94607 * 179.97438 * 18 17 16 20 20 C 1.38266 * 120.05233 * 0.02562 * 19 18 17 21 21 C 1.38269 * 120.11595 * 359.95530 * 20 19 18 22 22 C 1.38142 * 120.04935 * 0.04230 * 21 20 19 23 23 H 0.97005 * 119.99897 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47064 * 59.99716 * 10 9 7 25 25 H 1.09003 * 109.46890 * 300.00127 * 10 9 7 26 26 H 1.08997 * 109.47012 * 60.00043 * 14 13 11 27 27 H 1.09000 * 109.46871 * 299.99813 * 14 13 11 28 28 H 1.08999 * 109.46920 * 304.99605 * 15 14 13 29 29 H 1.08998 * 109.47220 * 184.99975 * 15 14 13 30 30 H 1.08002 * 120.02704 * 359.70561 * 18 17 16 31 31 H 1.08001 * 119.97447 * 179.97438 * 19 18 17 32 32 H 1.08000 * 119.94089 * 179.97438 * 20 19 18 33 33 H 1.07992 * 119.97577 * 180.02562 * 21 20 19 34 34 H 1.08005 * 120.02748 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9872 -5.3027 0.0030 12 8 0.7955 -5.5015 0.0030 13 8 2.8405 -6.3389 0.0037 14 6 2.2609 -7.6702 0.0039 15 6 3.3799 -8.7137 0.0054 16 8 4.1156 -8.6215 1.2270 17 6 5.1524 -9.4849 1.3893 18 6 5.9100 -9.4503 2.5511 19 6 6.9631 -10.3293 2.7140 20 6 7.2628 -11.2427 1.7202 21 6 6.5091 -11.2795 0.5615 22 6 5.4549 -10.4026 0.3939 23 1 -0.4850 0.8401 -0.0004 24 1 3.1237 -3.7309 0.8925 25 1 3.1251 -3.7317 -0.8875 26 1 1.6451 -7.7985 -0.8862 27 1 1.6444 -7.7979 0.8937 28 1 4.0482 -8.5308 -0.8360 29 1 2.9475 -9.7102 -0.0840 30 1 5.6793 -8.7338 3.3256 31 1 7.5534 -10.3026 3.6180 32 1 8.0868 -11.9288 1.8493 33 1 6.7449 -11.9941 -0.2130 34 1 4.8667 -10.4313 -0.5114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058681833.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:17 Heat of formation + Delta-G solvation = -100.860962 kcal Electronic energy + Delta-G solvation = -18259.980578 eV Core-core repulsion = 15056.733640 eV Total energy + Delta-G solvation = -3203.246938 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.45109 -39.91006 -37.71316 -36.12008 -32.48720 -31.76010 -31.08982 -29.88018 -29.03495 -25.57004 -24.17092 -22.68916 -21.90967 -20.96122 -18.65404 -17.96842 -17.30021 -16.66100 -16.23535 -16.08804 -15.82404 -15.32358 -14.84732 -14.71462 -14.11048 -13.82609 -13.71138 -13.44530 -12.99907 -12.74059 -12.52854 -12.11543 -11.93405 -11.81566 -11.27352 -11.10732 -11.09285 -11.07338 -10.80744 -10.52943 -10.03225 -9.89031 -9.29066 -9.12462 -8.46380 -8.35845 -6.60513 -6.27575 -4.00106 1.05401 1.18041 2.59267 2.64338 2.89015 3.19879 3.23913 3.29575 3.50182 3.52532 4.14581 4.41504 4.57056 4.66741 4.72666 4.79672 4.87058 5.07956 5.08686 5.09377 5.14763 5.27473 5.36999 5.44662 5.61549 5.72466 5.78655 6.03086 6.09083 6.12015 6.25151 6.49115 6.63033 7.16143 7.55857 8.14129 8.30707 9.18167 10.79996 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.031258 B = 0.002692 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.558120 B =10397.105611 C =11025.116476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.077 0.923 9 S -0.060 6.060 10 C -0.128 4.128 11 C 0.480 3.520 12 O -0.489 6.489 13 O -0.355 6.355 14 C 0.067 3.933 15 C 0.062 3.938 16 O -0.306 6.306 17 C 0.134 3.866 18 C -0.152 4.152 19 C -0.081 4.081 20 C -0.163 4.163 21 C -0.081 4.081 22 C -0.212 4.212 23 H 0.269 0.731 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.357 -22.003 1.163 25.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.748 3.252 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.095 0.905 9 S 0.167 5.833 10 C -0.276 4.276 11 C 0.322 3.678 12 O -0.375 6.375 13 O -0.273 6.273 14 C -0.008 4.008 15 C -0.013 4.013 16 O -0.219 6.219 17 C 0.088 3.912 18 C -0.171 4.171 19 C -0.099 4.099 20 C -0.182 4.182 21 C -0.099 4.099 22 C -0.231 4.231 23 H 0.079 0.921 24 H 0.122 0.878 25 H 0.121 0.879 26 H 0.111 0.889 27 H 0.100 0.900 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.623 -22.034 1.285 24.495 hybrid contribution 1.762 1.023 -0.244 2.052 sum 12.385 -21.011 1.041 24.412 Atomic orbital electron populations 1.70020 1.05989 1.27523 1.46721 1.25010 0.95074 0.99138 0.94350 0.86064 0.79630 0.81573 0.77933 1.19485 1.20511 1.20501 1.22883 0.95065 0.91113 1.59220 0.90517 1.85404 1.04407 0.96631 1.96885 1.23298 1.06958 0.90813 1.06544 1.23321 0.85147 0.87104 0.72246 1.90667 1.16907 1.85643 1.44239 1.86573 1.40998 1.14877 1.84857 1.22995 0.94485 0.79261 1.04024 1.22923 0.93585 0.98355 0.86418 1.86181 1.41655 1.54905 1.39165 1.19079 0.88204 0.89470 0.94453 1.20523 0.97064 1.02383 0.97117 1.20991 0.95834 0.94187 0.98876 1.21064 1.01444 1.00898 0.94749 1.20946 0.94149 0.97490 0.97336 1.21285 1.02112 0.99643 1.00051 0.92126 0.87828 0.87901 0.88863 0.90006 0.90622 0.89772 0.85025 0.85373 0.86013 0.85869 0.85462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.81 13.22 55.49 0.73 -25.08 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.53 -15.07 9.50 30.94 0.29 -14.77 16 8 H 0.08 2.05 7.80 -52.49 -0.41 1.64 16 9 S -0.06 -1.60 20.58 -107.50 -2.21 -3.81 16 10 C -0.13 -2.65 6.27 36.01 0.23 -2.42 16 11 C 0.48 9.28 7.97 36.01 0.29 9.56 16 12 O -0.49 -10.67 15.61 -18.74 -0.29 -10.96 16 13 O -0.36 -5.72 10.19 -42.02 -0.43 -6.15 16 14 C 0.07 0.82 5.85 37.16 0.22 1.03 16 15 C 0.06 0.61 5.13 37.16 0.19 0.80 16 16 O -0.31 -3.78 10.11 -22.98 -0.23 -4.02 16 17 C 0.13 1.49 6.69 -39.22 -0.26 1.22 16 18 C -0.15 -1.57 9.99 -39.43 -0.39 -1.96 16 19 C -0.08 -0.68 10.04 -39.61 -0.40 -1.08 16 20 C -0.16 -1.29 10.04 -39.56 -0.40 -1.68 16 21 C -0.08 -0.65 10.04 -39.61 -0.40 -1.05 16 22 C -0.21 -1.95 9.04 -39.44 -0.36 -2.31 16 23 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.10 2.01 8.14 -51.92 -0.42 1.59 16 25 H 0.10 1.96 8.14 -51.91 -0.42 1.53 16 26 H 0.09 1.00 8.13 -51.93 -0.42 0.58 16 27 H 0.08 1.03 8.13 -51.93 -0.42 0.60 16 28 H 0.08 0.67 7.66 -51.93 -0.40 0.27 16 29 H 0.08 0.58 7.66 -51.93 -0.40 0.18 16 30 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 31 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 32 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 33 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.13 0.93 6.30 -52.48 -0.33 0.60 16 LS Contribution 319.15 15.07 4.81 4.81 Total: -1.00 -33.58 319.15 -7.78 -41.36 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -4.05 Total: -1.68 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -1.09 Total: -10.68 kcal Atomic # 7 Polarization: -25.81 SS G_CDS: 0.73 Total: -25.08 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.95 Total: -21.13 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.58 -7.78 -41.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058681833.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.498 kcal (2) G-P(sol) polarization free energy of solvation -33.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds