Wall clock time and date at job start Fri Apr 10 2020 15:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86808 * 120.00135 * 2 1 4 4 H 1.48506 * 109.46993 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46598 * 299.99496 * 3 2 1 6 6 H 1.48498 * 109.47173 * 59.99806 * 3 2 1 7 7 C 1.38799 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00419 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99752 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00083 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47023 * 179.97438 * 10 9 7 12 12 O 1.20818 * 120.00216 * 359.97438 * 11 10 9 13 13 O 1.34231 * 119.99727 * 179.97438 * 11 10 9 14 14 C 1.45200 * 116.99973 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47110 * 180.02562 * 14 13 11 16 16 O 1.42902 * 109.47386 * 64.99852 * 15 14 13 17 17 C 1.35898 * 116.99694 * 180.02562 * 16 15 14 18 18 C 1.38735 * 120.05254 * 179.97438 * 17 16 15 19 19 C 1.38144 * 119.94607 * 179.97438 * 18 17 16 20 20 C 1.38266 * 120.05233 * 0.02562 * 19 18 17 21 21 C 1.38269 * 120.11595 * 359.95530 * 20 19 18 22 22 C 1.38142 * 120.04935 * 0.04230 * 21 20 19 23 23 H 0.97005 * 119.99897 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47064 * 59.99716 * 10 9 7 25 25 H 1.09003 * 109.46890 * 300.00127 * 10 9 7 26 26 H 1.08997 * 109.47012 * 60.00043 * 14 13 11 27 27 H 1.09000 * 109.46871 * 299.99813 * 14 13 11 28 28 H 1.08999 * 109.46920 * 304.99605 * 15 14 13 29 29 H 1.08998 * 109.47220 * 184.99975 * 15 14 13 30 30 H 1.08002 * 120.02704 * 359.70561 * 18 17 16 31 31 H 1.08001 * 119.97447 * 179.97438 * 19 18 17 32 32 H 1.08000 * 119.94089 * 179.97438 * 20 19 18 33 33 H 1.07992 * 119.97577 * 180.02562 * 21 20 19 34 34 H 1.08005 * 120.02748 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0021 11 6 1.9872 -5.3027 0.0030 12 8 0.7955 -5.5015 0.0030 13 8 2.8405 -6.3389 0.0037 14 6 2.2609 -7.6702 0.0039 15 6 3.3799 -8.7137 0.0054 16 8 4.1156 -8.6215 1.2270 17 6 5.1524 -9.4849 1.3893 18 6 5.9100 -9.4503 2.5511 19 6 6.9631 -10.3293 2.7140 20 6 7.2628 -11.2427 1.7202 21 6 6.5091 -11.2795 0.5615 22 6 5.4549 -10.4026 0.3939 23 1 -0.4850 0.8401 -0.0004 24 1 3.1237 -3.7309 0.8925 25 1 3.1251 -3.7317 -0.8875 26 1 1.6451 -7.7985 -0.8862 27 1 1.6444 -7.7979 0.8937 28 1 4.0482 -8.5308 -0.8360 29 1 2.9475 -9.7102 -0.0840 30 1 5.6793 -8.7338 3.3256 31 1 7.5534 -10.3026 3.6180 32 1 8.0868 -11.9288 1.8493 33 1 6.7449 -11.9941 -0.2130 34 1 4.8667 -10.4313 -0.5114 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058681833.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 15:00:17 Heat of formation + Delta-G solvation = -120.554309 kcal Electronic energy + Delta-G solvation = -18260.834546 eV Core-core repulsion = 15056.733640 eV Total energy + Delta-G solvation = -3204.100906 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.58267 -40.95672 -38.49608 -37.48554 -34.62044 -32.68970 -31.84748 -31.07707 -30.05251 -27.72052 -25.04283 -23.37719 -22.85978 -22.19038 -19.93619 -19.38433 -18.77778 -17.74680 -17.48643 -16.90903 -16.87780 -16.75616 -16.46975 -15.91168 -15.41625 -14.95680 -14.67571 -14.50613 -14.30508 -13.97159 -13.55766 -13.51424 -13.19169 -12.92473 -12.86834 -12.62979 -12.45085 -12.07440 -11.88972 -11.77101 -11.63186 -11.57363 -11.18171 -10.39234 -9.93745 -9.16755 -8.74658 -8.38415 -6.18150 0.40896 0.50544 1.00033 1.10114 1.40653 1.41870 1.56031 1.86781 2.13950 2.23011 2.86535 2.96710 3.24590 3.58125 3.77987 3.93609 3.96774 4.02684 4.15310 4.22480 4.25850 4.33197 4.42431 4.48796 4.53140 4.60231 4.77416 5.10453 5.21932 5.37040 5.40749 5.49644 5.62114 5.87609 6.17684 6.43999 6.65759 7.03485 8.71103 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.031258 B = 0.002692 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.558120 B =10397.105611 C =11025.116476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 1.001 2.999 4 H -0.258 1.258 5 H -0.272 1.272 6 H -0.273 1.273 7 C -0.548 4.548 8 H 0.085 0.915 9 S -0.137 6.137 10 C -0.110 4.110 11 C 0.490 3.510 12 O -0.520 6.520 13 O -0.351 6.351 14 C 0.059 3.941 15 C 0.065 3.935 16 O -0.334 6.334 17 C 0.107 3.893 18 C -0.176 4.176 19 C -0.085 4.085 20 C -0.165 4.165 21 C -0.085 4.085 22 C -0.218 4.218 23 H 0.273 0.727 24 H 0.118 0.882 25 H 0.123 0.877 26 H 0.111 0.889 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.117 0.883 30 H 0.125 0.875 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.660 -23.119 0.636 27.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.822 3.178 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.695 4.695 8 H 0.103 0.897 9 S 0.090 5.910 10 C -0.258 4.258 11 C 0.332 3.668 12 O -0.408 6.408 13 O -0.268 6.268 14 C -0.015 4.015 15 C -0.010 4.010 16 O -0.249 6.249 17 C 0.063 3.937 18 C -0.195 4.195 19 C -0.103 4.103 20 C -0.183 4.183 21 C -0.103 4.103 22 C -0.236 4.236 23 H 0.082 0.918 24 H 0.136 0.864 25 H 0.141 0.859 26 H 0.129 0.871 27 H 0.093 0.907 28 H 0.105 0.895 29 H 0.135 0.865 30 H 0.143 0.857 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.167 0.833 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 12.949 -23.182 0.759 26.565 hybrid contribution 1.118 1.168 -0.064 1.618 sum 14.068 -22.014 0.695 26.135 Atomic orbital electron populations 1.70166 1.07911 1.28752 1.47750 1.26127 0.96011 1.03297 0.93538 0.84874 0.78569 0.76159 0.78153 1.18120 1.19770 1.19880 1.23219 0.95482 0.91566 1.59253 0.89689 1.85493 1.09215 0.99086 1.97162 1.23090 1.04270 0.90261 1.08167 1.22938 0.84744 0.87412 0.71660 1.90658 1.18170 1.86108 1.45858 1.86540 1.40339 1.15899 1.84015 1.23408 0.95906 0.77524 1.04647 1.23050 0.93038 0.98778 0.86085 1.86121 1.42503 1.55930 1.40326 1.19331 0.88529 0.90372 0.95513 1.20722 0.98200 1.03303 0.97279 1.21290 0.95329 0.93710 0.99972 1.21450 1.01821 1.00712 0.94324 1.21338 0.93481 0.97443 0.98050 1.21541 1.02684 0.99254 1.00167 0.91817 0.86397 0.85940 0.87112 0.90659 0.89485 0.86485 0.85701 0.83365 0.83526 0.83286 0.83728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.99 13.22 21.65 0.29 -54.71 16 2 C 0.02 0.86 5.49 84.86 0.47 1.33 16 3 Si 1.00 43.22 29.55 68.60 2.03 45.25 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.55 -30.96 9.50 67.95 0.65 -30.32 16 8 H 0.09 4.49 7.80 -2.91 -0.02 4.47 16 9 S -0.14 -7.46 20.58 -56.49 -1.16 -8.63 16 10 C -0.11 -4.48 6.27 71.24 0.45 -4.03 16 11 C 0.49 18.80 7.97 71.24 0.57 19.37 16 12 O -0.52 -22.95 15.61 21.99 0.34 -22.61 16 13 O -0.35 -10.97 10.19 -48.78 -0.50 -11.47 16 14 C 0.06 1.37 5.85 71.98 0.42 1.79 16 15 C 0.06 1.15 5.13 71.98 0.37 1.52 16 16 O -0.33 -8.10 10.11 -89.00 -0.90 -9.00 16 17 C 0.11 2.31 6.69 22.51 0.15 2.46 16 18 C -0.18 -3.60 9.99 22.37 0.22 -3.38 16 19 C -0.09 -1.31 10.04 22.25 0.22 -1.09 16 20 C -0.17 -2.18 10.04 22.28 0.22 -1.96 16 21 C -0.09 -1.15 10.04 22.25 0.22 -0.92 16 22 C -0.22 -3.58 9.04 22.36 0.20 -3.37 16 23 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 24 H 0.12 4.48 8.14 -2.39 -0.02 4.46 16 25 H 0.12 4.52 8.14 -2.39 -0.02 4.50 16 26 H 0.11 2.21 8.13 -2.39 -0.02 2.19 16 27 H 0.07 1.87 8.13 -2.39 -0.02 1.85 16 28 H 0.09 1.34 7.66 -2.39 -0.02 1.32 16 29 H 0.12 1.30 7.66 -2.39 -0.02 1.28 16 30 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.15 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 34 H 0.15 1.71 6.30 -2.91 -0.02 1.70 16 Total: -1.00 -73.75 319.15 5.36 -68.39 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 1.10 Total: 11.37 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: 4.16 Total: -18.60 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: 0.29 Total: -54.71 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -1.05 Total: -43.07 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: -7.46 SS G_CDS: -1.16 Total: -8.63 kcal Total: -73.75 5.36 -68.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058681833.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.165 kcal (2) G-P(sol) polarization free energy of solvation -73.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds