Wall clock time and date at job start Fri Apr 10 2020 14:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00118 * 2 1 4 4 H 1.48501 * 109.47542 * 269.99953 * 3 2 1 5 5 H 1.48497 * 109.47343 * 30.00278 * 3 2 1 6 6 H 1.48503 * 109.47024 * 149.99691 * 3 2 1 7 7 C 1.37880 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99775 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47053 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47410 * 179.97438 * 10 9 7 12 12 O 1.42102 * 109.46866 * 70.94244 * 11 10 9 13 13 C 1.76197 * 103.00180 * 179.97438 * 11 10 9 14 14 C 1.38259 * 119.94524 * 90.00247 * 13 11 10 15 15 C 1.38195 * 120.11236 * 180.02562 * 14 13 11 16 16 C 1.38699 * 120.07032 * 359.96551 * 15 14 13 17 17 C 1.38974 * 119.81629 * 359.94593 * 16 15 14 18 18 C 1.38202 * 119.94475 * 269.97842 * 13 11 10 19 19 O 1.36112 * 120.77802 * 180.20926 * 17 16 15 20 20 C 1.43175 * 116.69942 * 342.71429 * 19 17 16 21 21 C 1.53465 * 108.23714 * 46.25215 * 20 19 17 22 22 O 1.36101 * 119.39836 * 179.80073 * 16 15 14 23 23 H 0.97000 * 119.99593 * 0.02562 * 1 2 3 24 24 H 1.08990 * 109.47497 * 59.99963 * 9 7 2 25 25 H 1.09002 * 109.47161 * 299.99346 * 9 7 2 26 26 H 1.09007 * 109.47131 * 59.99439 * 10 9 7 27 27 H 1.08997 * 109.47274 * 300.00048 * 10 9 7 28 28 H 1.07995 * 119.93994 * 0.30893 * 14 13 11 29 29 H 1.08000 * 119.96192 * 179.97438 * 15 14 13 30 30 H 1.07998 * 119.96268 * 0.03813 * 18 13 11 31 31 H 1.08997 * 109.71128 * 286.56948 * 20 19 17 32 32 H 1.09004 * 109.70792 * 165.94094 * 20 19 17 33 33 H 1.09002 * 109.70947 * 180.57020 * 21 20 19 34 34 H 1.09003 * 109.73992 * 59.96906 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2451 -3.6621 -0.0027 11 16 1.3382 -5.2330 -0.0034 12 8 0.7221 -5.4237 -1.2696 13 6 2.6267 -6.4347 -0.0053 14 6 3.1323 -6.9064 1.1919 15 6 4.1433 -7.8486 1.1945 16 6 4.6532 -8.3240 -0.0046 17 6 4.1437 -7.8512 -1.2080 18 6 3.1301 -6.9046 -1.2036 19 8 4.6266 -8.3074 -2.3960 20 6 5.8938 -8.9731 -2.3624 21 6 5.8797 -9.9741 -1.1993 22 8 5.6516 -9.2488 0.0138 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5563 -0.8919 25 1 0.6240 -2.5575 0.8881 26 1 2.8719 -3.6051 0.8873 27 1 2.8718 -3.6036 -0.8926 28 1 2.7333 -6.5414 2.1267 29 1 4.5367 -8.2151 2.1311 30 1 2.7336 -6.5343 -2.1374 31 1 6.6886 -8.2430 -2.2094 32 1 6.0559 -9.5026 -3.3013 33 1 6.8393 -10.4884 -1.1453 34 1 5.0811 -10.7008 -1.3486 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127344299.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:22 Heat of formation + Delta-G solvation = -118.628075 kcal Electronic energy + Delta-G solvation = -19186.444441 eV Core-core repulsion = 15982.427063 eV Total energy + Delta-G solvation = -3204.017378 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.076 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.31096 -38.74412 -38.37332 -36.81734 -35.70764 -32.84030 -32.28158 -31.79049 -29.58640 -27.30364 -25.89629 -24.12594 -23.21980 -22.08406 -20.02318 -18.94741 -18.71433 -18.32786 -17.74060 -16.74551 -16.55315 -16.45745 -15.99603 -15.71052 -15.59230 -15.47682 -15.06134 -14.95351 -14.49456 -14.18795 -13.75310 -13.56322 -13.12353 -12.94122 -12.77798 -12.62002 -12.37936 -12.09674 -11.97480 -11.90901 -11.60259 -11.47492 -10.88770 -10.57827 -9.86388 -9.51492 -9.12413 -8.19646 -6.32123 -0.20675 0.20919 0.95828 1.40593 1.41840 1.53217 1.84829 1.91497 2.22916 2.41542 2.55296 2.99681 3.12486 3.16309 3.54443 3.85694 3.97036 4.12328 4.23710 4.28806 4.35344 4.46586 4.50114 4.51875 4.73740 4.86826 5.02398 5.03874 5.23111 5.44985 5.54455 5.55174 5.76852 5.79241 6.21027 6.28137 6.81769 7.36720 8.91058 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.028238 B = 0.003622 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.329710 B = 7727.672138 C = 7973.035191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.000 4.000 3 Si 0.965 3.035 4 H -0.281 1.281 5 H -0.276 1.276 6 H -0.259 1.259 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.036 3.964 10 C -0.425 4.425 11 S 1.388 4.612 12 O -0.925 6.925 13 C -0.461 4.461 14 C -0.025 4.025 15 C -0.127 4.127 16 C 0.074 3.926 17 C 0.015 3.985 18 C -0.081 4.081 19 O -0.336 6.336 20 C 0.009 3.991 21 C 0.017 3.983 22 O -0.312 6.312 23 H 0.266 0.734 24 H -0.023 1.023 25 H 0.035 0.965 26 H 0.138 0.862 27 H 0.049 0.951 28 H 0.199 0.801 29 H 0.176 0.824 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.152 0.848 33 H 0.162 0.838 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.556 -21.516 5.803 25.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.790 3.210 4 H -0.207 1.207 5 H -0.201 1.201 6 H -0.183 1.183 7 C -0.581 4.581 8 H 0.078 0.922 9 C -0.003 4.003 10 C -0.562 4.562 11 S 1.589 4.411 12 O -0.921 6.921 13 C -0.558 4.558 14 C -0.044 4.044 15 C -0.146 4.146 16 C 0.028 3.972 17 C -0.031 4.031 18 C -0.101 4.101 19 O -0.252 6.252 20 C -0.066 4.066 21 C -0.058 4.058 22 O -0.226 6.226 23 H 0.075 0.925 24 H -0.005 1.005 25 H 0.053 0.947 26 H 0.156 0.844 27 H 0.068 0.932 28 H 0.216 0.784 29 H 0.193 0.807 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.170 0.830 33 H 0.180 0.820 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.475 -21.634 5.739 25.152 hybrid contribution 1.660 1.115 -2.798 3.439 sum 13.135 -20.519 2.941 24.540 Atomic orbital electron populations 1.70079 1.07689 1.27989 1.51281 1.25984 0.95838 1.03306 0.94663 0.85444 0.78959 0.78486 0.78143 1.20718 1.20129 1.18289 1.21627 0.93522 0.91953 1.50955 0.92182 1.18680 0.93610 0.91968 0.96021 1.27696 1.08894 1.13025 1.06635 1.68426 0.83911 0.82190 1.06578 1.92935 1.67964 1.83553 1.47623 1.27706 1.16394 1.15083 0.96654 1.21271 0.92635 0.92849 0.97605 1.21055 0.97637 0.99487 0.96463 1.19310 0.91791 0.92512 0.93576 1.19045 0.99529 0.99189 0.85320 1.20378 0.95790 0.95228 0.98683 1.86305 1.37973 1.73075 1.27807 1.24029 0.83194 0.96123 1.03212 1.23990 1.06568 0.93165 0.82028 1.86292 1.49271 1.49551 1.37498 0.92541 1.00482 0.94688 0.84424 0.93180 0.78356 0.80657 0.88089 0.90405 0.83000 0.82019 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 2 C 0.00 0.02 5.46 84.66 0.46 0.48 16 3 Si 0.97 44.45 29.54 68.60 2.03 46.48 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.54 -31.09 9.11 25.60 0.23 -30.86 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.04 1.87 4.98 29.85 0.15 2.02 16 10 C -0.43 -17.21 5.82 71.98 0.42 -16.79 16 11 S 1.39 45.91 13.54 -56.49 -0.77 45.15 16 12 O -0.92 -43.83 16.89 -148.98 -2.52 -46.34 16 13 C -0.46 -13.52 5.61 22.27 0.12 -13.40 16 14 C -0.02 -0.49 9.74 22.26 0.22 -0.27 16 15 C -0.13 -2.50 9.96 22.37 0.22 -2.28 16 16 C 0.07 1.84 6.49 22.56 0.15 1.98 16 17 C 0.02 0.46 6.49 22.56 0.15 0.61 16 18 C -0.08 -2.85 9.36 22.37 0.21 -2.64 16 19 O -0.34 -9.63 10.42 -82.60 -0.86 -10.49 16 20 C 0.01 0.15 7.26 72.14 0.52 0.67 16 21 C 0.02 0.23 7.26 72.14 0.52 0.75 16 22 O -0.31 -6.36 10.42 -82.46 -0.86 -7.22 16 23 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 24 H -0.02 -1.41 8.14 -2.39 -0.02 -1.43 16 25 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16 27 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.20 1.81 8.06 -2.91 -0.02 1.78 16 29 H 0.18 2.17 8.06 -2.91 -0.02 2.15 16 30 H 0.10 4.20 7.44 -2.91 -0.02 4.18 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.15 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.16 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -87.27 307.71 1.79 -85.48 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: 1.10 Total: 3.09 kcal Atomic # 6 Polarization: -63.10 SS G_CDS: 3.38 Total: -59.73 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.28 Total: -56.41 kcal Atomic # 8 Polarization: -59.82 SS G_CDS: -4.24 Total: -64.05 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 45.91 SS G_CDS: -0.77 Total: 45.15 kcal Total: -87.27 1.79 -85.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127344299.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.153 kcal (2) G-P(sol) polarization free energy of solvation -87.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds