Wall clock time and date at job start Fri Apr 10 2020 14:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31430 * 1 3 3 Si 1.86805 * 119.99769 * 2 1 4 4 H 1.48496 * 109.47192 * 270.00317 * 3 2 1 5 5 H 1.48503 * 109.46983 * 30.00343 * 3 2 1 6 6 H 1.48499 * 109.46943 * 150.00332 * 3 2 1 7 7 C 1.38784 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00223 * 179.97438 * 7 2 1 9 9 O 1.34859 * 120.00212 * 0.02562 * 7 2 1 10 10 C 1.34789 * 117.00235 * 179.97438 * 9 7 2 11 11 O 1.21559 * 120.00122 * 359.97438 * 10 9 7 12 12 C 1.47286 * 120.00282 * 179.97438 * 10 9 7 13 13 C 1.39927 * 120.07421 * 179.97438 * 12 10 9 14 14 C 1.36579 * 119.92862 * 180.02562 * 13 12 10 15 15 C 1.39336 * 120.07119 * 0.02562 * 14 13 12 16 16 S 1.76195 * 119.92632 * 179.97438 * 15 14 13 17 17 C 1.81399 * 102.99929 * 180.02562 * 16 15 14 18 18 C 1.53005 * 109.47445 * 179.97438 * 17 16 15 19 19 C 1.52996 * 109.47245 * 179.97438 * 18 17 16 20 20 O 1.42900 * 109.46796 * 180.02562 * 19 18 17 21 21 C 1.39332 * 120.14369 * 0.25347 * 15 14 13 22 22 C 1.36584 * 120.07308 * 359.44475 * 21 15 14 23 23 H 0.96994 * 120.00298 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.03433 * 0.02562 * 13 12 10 25 25 H 1.07998 * 119.96693 * 180.02562 * 14 13 12 26 26 H 1.09001 * 109.47190 * 299.99963 * 17 16 15 27 27 H 1.09004 * 109.47089 * 60.00096 * 17 16 15 28 28 H 1.09001 * 109.46962 * 300.00183 * 18 17 16 29 29 H 1.09004 * 109.46832 * 60.00020 * 18 17 16 30 30 H 1.09001 * 109.47372 * 300.00032 * 19 18 17 31 31 H 1.09004 * 109.47108 * 60.00288 * 19 18 17 32 32 H 0.96700 * 113.99855 * 180.02562 * 20 19 18 33 33 H 1.07998 * 119.96566 * 179.70032 * 21 15 14 34 34 H 1.07996 * 120.04244 * 180.27550 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4957 2.0466 -1.4000 5 1 1.4457 2.6527 0.7001 6 1 3.5458 1.4402 0.7000 7 6 2.0083 -1.2019 -0.0005 8 1 3.0883 -1.2019 -0.0010 9 8 1.3341 -2.3698 -0.0016 10 6 2.0682 -3.5003 -0.0026 11 8 3.2821 -3.4366 -0.0030 12 6 1.3997 -4.8126 -0.0032 13 6 2.1603 -5.9871 -0.0048 14 6 1.5373 -7.2025 -0.0059 15 6 0.1458 -7.2737 -0.0059 16 16 -0.6540 -8.8437 -0.0080 17 6 -2.4142 -8.4049 -0.0082 18 6 -3.2580 -9.6813 -0.0106 19 6 -4.7426 -9.3112 -0.0101 20 8 -5.5306 -10.5032 -0.0117 21 6 -0.6146 -6.1062 -0.0102 22 6 0.0023 -4.8876 -0.0029 23 1 -0.4850 0.8400 0.0004 24 1 3.2390 -5.9325 -0.0052 25 1 2.1238 -8.1093 -0.0067 26 1 -2.6428 -7.8195 0.8824 27 1 -2.6421 -7.8175 -0.8976 28 1 -3.0293 -10.2663 -0.9014 29 1 -3.0302 -10.2691 0.8786 30 1 -4.9710 -8.7263 0.8809 31 1 -4.9707 -8.7231 -0.8991 32 1 -6.4844 -10.3442 -0.0119 33 1 -1.6930 -6.1647 -0.0152 34 1 -0.5876 -3.9830 -0.0018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735948678.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:54 Heat of formation + Delta-G solvation = -113.958815 kcal Electronic energy + Delta-G solvation = -18406.201703 eV Core-core repulsion = 15202.386799 eV Total energy + Delta-G solvation = -3203.814904 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.50368 -38.11994 -37.55688 -35.17605 -33.82918 -32.28128 -31.00244 -30.98784 -26.66763 -25.75545 -23.71524 -22.62018 -21.63046 -20.28833 -18.00152 -17.79386 -17.50384 -16.92524 -16.26096 -15.64664 -15.22709 -14.69392 -14.56918 -14.22237 -14.21316 -14.17602 -13.80423 -13.40101 -12.77209 -12.76183 -12.34670 -12.01992 -11.73811 -11.66029 -11.30348 -11.28476 -10.96272 -10.54775 -10.47618 -10.39532 -10.31380 -9.90160 -9.51634 -9.13166 -8.91616 -8.66245 -7.41538 -6.52273 -4.14013 0.97622 1.32432 1.61694 2.27323 3.07437 3.14552 3.20675 3.37210 3.77665 3.87799 4.26851 4.43587 4.51187 4.66736 4.79143 4.89772 4.94428 5.03947 5.09169 5.09956 5.22442 5.58764 5.59773 5.63136 5.71770 5.83059 6.08099 6.24644 6.40023 6.64857 6.94430 7.03723 7.18845 7.31878 7.86033 8.64234 8.96720 9.76499 10.65382 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.025460 B = 0.003140 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.515612 B = 8914.546905 C = 9988.312314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.041 3.959 3 Si 0.946 3.054 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.373 4.373 8 H 0.098 0.902 9 O -0.204 6.204 10 C 0.430 3.570 11 O -0.554 6.554 12 C -0.088 4.088 13 C -0.053 4.053 14 C -0.111 4.111 15 C -0.077 4.077 16 S -0.114 6.114 17 C -0.109 4.109 18 C -0.105 4.105 19 C 0.080 3.920 20 O -0.575 6.575 21 C -0.143 4.143 22 C -0.054 4.054 23 H 0.271 0.729 24 H 0.139 0.861 25 H 0.130 0.870 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.382 0.618 33 H 0.125 0.875 34 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.417 -16.084 -0.015 18.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.164 4.164 3 Si 0.770 3.230 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.449 4.449 8 H 0.116 0.884 9 O -0.111 6.111 10 C 0.279 3.721 11 O -0.453 6.453 12 C -0.092 4.092 13 C -0.073 4.073 14 C -0.134 4.134 15 C -0.190 4.190 16 S 0.130 5.870 17 C -0.258 4.258 18 C -0.143 4.143 19 C 0.001 3.999 20 O -0.381 6.381 21 C -0.166 4.166 22 C -0.074 4.074 23 H 0.081 0.919 24 H 0.157 0.843 25 H 0.148 0.852 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.229 0.771 33 H 0.142 0.858 34 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.315 -17.340 -0.011 19.231 hybrid contribution -0.682 2.480 -0.008 2.572 sum -8.998 -14.860 -0.019 17.372 Atomic orbital electron populations 1.69973 1.06088 1.27987 1.45462 1.25391 0.95874 0.99003 0.96117 0.85630 0.79102 0.79413 0.78851 1.19754 1.20226 1.18954 1.21333 0.92618 0.79745 1.51162 0.88398 1.83898 1.39211 1.13292 1.74729 1.20656 0.85913 0.85428 0.80144 1.90638 1.15052 1.87867 1.51707 1.19508 0.93540 0.91891 1.04223 1.20919 1.00742 0.90330 0.95344 1.20348 0.91898 0.97979 1.03181 1.21903 0.96873 0.95891 1.04358 1.85342 1.01173 1.07729 1.92717 1.23536 0.94409 1.01589 1.06254 1.21179 0.92364 0.96095 1.04695 1.22118 0.90763 0.86748 1.00297 1.86452 1.21701 1.32153 1.97761 1.20832 0.99369 0.91686 1.04758 1.21281 0.93987 0.98150 0.93970 0.91870 0.84308 0.85225 0.88925 0.88931 0.90079 0.90085 0.93187 0.93182 0.77062 0.85765 0.83727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.49 13.67 55.49 0.76 -23.73 16 2 C 0.04 1.13 5.49 -17.52 -0.10 1.04 16 3 Si 0.95 20.92 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.37 -10.93 9.65 30.93 0.30 -10.63 16 8 H 0.10 2.89 6.86 -52.48 -0.36 2.53 16 9 O -0.20 -5.84 8.98 -21.81 -0.20 -6.03 16 10 C 0.43 11.03 7.82 34.41 0.27 11.30 16 11 O -0.55 -15.26 15.58 -19.31 -0.30 -15.56 16 12 C -0.09 -1.80 5.88 -104.95 -0.62 -2.42 16 13 C -0.05 -0.93 9.54 -39.55 -0.38 -1.31 16 14 C -0.11 -1.63 9.73 -39.77 -0.39 -2.02 16 15 C -0.08 -1.10 6.13 -38.77 -0.24 -1.34 16 16 S -0.11 -1.31 21.92 -107.50 -2.36 -3.67 16 17 C -0.11 -0.96 4.33 37.16 0.16 -0.80 16 18 C -0.10 -0.84 5.59 -26.73 -0.15 -0.99 16 19 C 0.08 0.55 7.05 37.16 0.26 0.81 16 20 O -0.57 -4.42 13.66 -35.23 -0.48 -4.90 16 21 C -0.14 -2.11 9.30 -39.77 -0.37 -2.48 16 22 C -0.05 -0.98 9.56 -39.54 -0.38 -1.35 16 23 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 24 H 0.14 2.36 7.64 -52.49 -0.40 1.96 16 25 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 26 H 0.09 0.77 7.75 -51.92 -0.40 0.37 16 27 H 0.09 0.77 7.73 -51.92 -0.40 0.37 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.38 1.18 9.12 45.56 0.42 1.60 16 33 H 0.12 1.49 5.86 -52.49 -0.31 1.18 16 34 H 0.14 2.75 7.60 -52.49 -0.40 2.35 16 LS Contribution 316.26 15.07 4.77 4.77 Total: -1.00 -33.65 316.26 -7.56 -41.21 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -3.10 Total: 2.22 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -1.62 Total: -10.20 kcal Atomic # 7 Polarization: -24.49 SS G_CDS: 0.76 Total: -23.73 kcal Atomic # 8 Polarization: -25.52 SS G_CDS: -0.98 Total: -26.49 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: -1.31 SS G_CDS: -2.36 Total: -3.67 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.65 -7.56 -41.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735948678.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.747 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds