Wall clock time and date at job start Fri Apr 10 2020 14:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31430 * 1 3 3 Si 1.86805 * 119.99769 * 2 1 4 4 H 1.48496 * 109.47192 * 270.00317 * 3 2 1 5 5 H 1.48503 * 109.46983 * 30.00343 * 3 2 1 6 6 H 1.48499 * 109.46943 * 150.00332 * 3 2 1 7 7 C 1.38784 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00223 * 179.97438 * 7 2 1 9 9 O 1.34859 * 120.00212 * 0.02562 * 7 2 1 10 10 C 1.34789 * 117.00235 * 179.97438 * 9 7 2 11 11 O 1.21559 * 120.00122 * 359.97438 * 10 9 7 12 12 C 1.47286 * 120.00282 * 179.97438 * 10 9 7 13 13 C 1.39927 * 120.07421 * 179.97438 * 12 10 9 14 14 C 1.36579 * 119.92862 * 180.02562 * 13 12 10 15 15 C 1.39336 * 120.07119 * 0.02562 * 14 13 12 16 16 S 1.76195 * 119.92632 * 179.97438 * 15 14 13 17 17 C 1.81399 * 102.99929 * 180.02562 * 16 15 14 18 18 C 1.53005 * 109.47445 * 179.97438 * 17 16 15 19 19 C 1.52996 * 109.47245 * 179.97438 * 18 17 16 20 20 O 1.42900 * 109.46796 * 180.02562 * 19 18 17 21 21 C 1.39332 * 120.14369 * 0.25347 * 15 14 13 22 22 C 1.36584 * 120.07308 * 359.44475 * 21 15 14 23 23 H 0.96994 * 120.00298 * 359.97438 * 1 2 3 24 24 H 1.08001 * 120.03433 * 0.02562 * 13 12 10 25 25 H 1.07998 * 119.96693 * 180.02562 * 14 13 12 26 26 H 1.09001 * 109.47190 * 299.99963 * 17 16 15 27 27 H 1.09004 * 109.47089 * 60.00096 * 17 16 15 28 28 H 1.09001 * 109.46962 * 300.00183 * 18 17 16 29 29 H 1.09004 * 109.46832 * 60.00020 * 18 17 16 30 30 H 1.09001 * 109.47372 * 300.00032 * 19 18 17 31 31 H 1.09004 * 109.47108 * 60.00288 * 19 18 17 32 32 H 0.96700 * 113.99855 * 180.02562 * 20 19 18 33 33 H 1.07998 * 119.96566 * 179.70032 * 21 15 14 34 34 H 1.07996 * 120.04244 * 180.27550 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4957 2.0466 -1.4000 5 1 1.4457 2.6527 0.7001 6 1 3.5458 1.4402 0.7000 7 6 2.0083 -1.2019 -0.0005 8 1 3.0883 -1.2019 -0.0010 9 8 1.3341 -2.3698 -0.0016 10 6 2.0682 -3.5003 -0.0026 11 8 3.2821 -3.4366 -0.0030 12 6 1.3997 -4.8126 -0.0032 13 6 2.1603 -5.9871 -0.0048 14 6 1.5373 -7.2025 -0.0059 15 6 0.1458 -7.2737 -0.0059 16 16 -0.6540 -8.8437 -0.0080 17 6 -2.4142 -8.4049 -0.0082 18 6 -3.2580 -9.6813 -0.0106 19 6 -4.7426 -9.3112 -0.0101 20 8 -5.5306 -10.5032 -0.0117 21 6 -0.6146 -6.1062 -0.0102 22 6 0.0023 -4.8876 -0.0029 23 1 -0.4850 0.8400 0.0004 24 1 3.2390 -5.9325 -0.0052 25 1 2.1238 -8.1093 -0.0067 26 1 -2.6428 -7.8195 0.8824 27 1 -2.6421 -7.8175 -0.8976 28 1 -3.0293 -10.2663 -0.9014 29 1 -3.0302 -10.2691 0.8786 30 1 -4.9710 -8.7263 0.8809 31 1 -4.9707 -8.7231 -0.8991 32 1 -6.4844 -10.3442 -0.0119 33 1 -1.6930 -6.1647 -0.0152 34 1 -0.5876 -3.9830 -0.0018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000735948678.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:54 Heat of formation + Delta-G solvation = -136.422308 kcal Electronic energy + Delta-G solvation = -18407.175793 eV Core-core repulsion = 15202.386799 eV Total energy + Delta-G solvation = -3204.788994 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.076 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.29848 -39.72929 -38.08279 -37.25881 -34.47666 -34.37876 -32.45154 -32.28520 -27.81144 -27.29285 -25.33539 -23.76902 -22.42539 -22.02435 -19.93062 -19.17523 -18.66951 -18.05161 -17.22414 -16.84119 -16.61391 -16.46362 -16.27564 -15.79358 -15.59871 -14.83225 -14.79045 -14.67829 -14.27886 -14.05316 -13.68010 -13.34002 -13.19799 -12.91447 -12.46340 -12.37371 -12.36750 -12.17323 -12.05206 -11.99396 -11.30023 -11.13225 -10.88222 -10.85495 -10.72798 -10.21270 -8.60003 -8.46182 -6.36455 -0.45486 0.31721 0.36310 1.31162 1.32961 1.34159 1.50374 1.68566 2.08220 2.65631 2.69495 3.00049 3.27777 3.69773 3.82178 3.82816 4.07106 4.22579 4.25173 4.26356 4.35459 4.51860 4.55395 4.60280 4.61517 4.92203 5.01539 5.05192 5.07754 5.11214 5.22473 5.43145 5.67855 5.77225 6.56103 6.84630 6.89468 7.67916 8.60514 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.025460 B = 0.003140 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.515612 B = 8914.546905 C = 9988.312314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.002 4.002 3 Si 1.019 2.981 4 H -0.259 1.259 5 H -0.257 1.257 6 H -0.264 1.264 7 C -0.421 4.421 8 H 0.082 0.918 9 O -0.231 6.231 10 C 0.431 3.569 11 O -0.583 6.583 12 C -0.131 4.131 13 C -0.049 4.049 14 C -0.107 4.107 15 C -0.065 4.065 16 S -0.095 6.095 17 C -0.109 4.109 18 C -0.102 4.102 19 C 0.080 3.920 20 O -0.597 6.597 21 C -0.137 4.137 22 C -0.055 4.055 23 H 0.281 0.719 24 H 0.137 0.863 25 H 0.161 0.839 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.400 0.600 33 H 0.158 0.842 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.845 -17.619 -0.038 20.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.203 4.203 3 Si 0.838 3.162 4 H -0.183 1.183 5 H -0.181 1.181 6 H -0.189 1.189 7 C -0.496 4.496 8 H 0.100 0.900 9 O -0.139 6.139 10 C 0.282 3.718 11 O -0.483 6.483 12 C -0.134 4.134 13 C -0.069 4.069 14 C -0.130 4.130 15 C -0.178 4.178 16 S 0.151 5.849 17 C -0.257 4.257 18 C -0.141 4.141 19 C 0.001 3.999 20 O -0.406 6.406 21 C -0.160 4.160 22 C -0.075 4.075 23 H 0.091 0.909 24 H 0.154 0.846 25 H 0.179 0.821 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.251 0.749 33 H 0.176 0.824 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.780 -18.923 -0.037 21.300 hybrid contribution -0.379 2.593 -0.001 2.621 sum -10.159 -16.330 -0.038 19.232 Atomic orbital electron populations 1.70047 1.07601 1.29643 1.45929 1.26574 0.96964 1.02253 0.94471 0.84606 0.77696 0.74298 0.79631 1.18342 1.18094 1.18852 1.21507 0.92351 0.81055 1.54703 0.90007 1.83921 1.39835 1.13940 1.76166 1.21700 0.85908 0.86571 0.77665 1.90581 1.16447 1.88539 1.52728 1.19362 0.94767 0.89932 1.09382 1.20965 1.00635 0.90395 0.94932 1.20643 0.92575 0.97785 1.01985 1.22302 0.97092 0.97592 1.00858 1.85448 1.03117 1.04805 1.91535 1.23688 0.92234 1.02345 1.07459 1.21135 0.93276 0.95486 1.04166 1.22131 0.89752 0.86650 1.01410 1.86395 1.23461 1.32909 1.97834 1.21078 1.01016 0.90331 1.03613 1.21168 0.92871 0.99139 0.94333 0.90926 0.84553 0.82125 0.87751 0.87750 0.90625 0.90637 0.92079 0.92068 0.74916 0.82441 0.85515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.40 13.67 21.63 0.30 -52.10 16 2 C 0.00 -0.09 5.49 84.88 0.47 0.38 16 3 Si 1.02 43.39 29.55 68.60 2.03 45.42 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 6 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 7 C -0.42 -26.03 9.65 67.95 0.66 -25.38 16 8 H 0.08 5.15 6.86 -2.91 -0.02 5.13 16 9 O -0.23 -14.02 8.98 10.71 0.10 -13.92 16 10 C 0.43 23.47 7.82 70.20 0.55 24.02 16 11 O -0.58 -34.02 15.58 19.64 0.31 -33.71 16 12 C -0.13 -5.53 5.88 -20.08 -0.12 -5.65 16 13 C -0.05 -1.71 9.54 22.29 0.21 -1.50 16 14 C -0.11 -2.91 9.73 22.15 0.22 -2.69 16 15 C -0.07 -1.67 6.13 22.80 0.14 -1.53 16 16 S -0.09 -1.84 21.92 -56.49 -1.24 -3.07 16 17 C -0.11 -1.50 4.33 71.98 0.31 -1.18 16 18 C -0.10 -1.32 5.59 30.59 0.17 -1.14 16 19 C 0.08 0.85 7.05 71.98 0.51 1.35 16 20 O -0.60 -7.68 13.66 -148.98 -2.03 -9.72 16 21 C -0.14 -3.75 9.30 22.15 0.21 -3.55 16 22 C -0.05 -2.01 9.56 22.29 0.21 -1.80 16 23 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 24 H 0.14 4.72 7.64 -2.91 -0.02 4.70 16 25 H 0.16 3.39 8.06 -2.91 -0.02 3.36 16 26 H 0.10 1.28 7.75 -2.39 -0.02 1.26 16 27 H 0.10 1.28 7.73 -2.39 -0.02 1.26 16 28 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.40 1.51 9.12 -74.06 -0.68 0.84 16 33 H 0.16 3.21 5.86 -2.91 -0.02 3.19 16 34 H 0.13 5.06 7.60 -2.91 -0.02 5.04 16 Total: -1.00 -76.70 316.26 3.44 -73.26 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.46 Total: 12.52 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 3.53 Total: -18.67 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.30 Total: -52.10 kcal Atomic # 8 Polarization: -55.72 SS G_CDS: -1.63 Total: -57.35 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: -1.84 SS G_CDS: -1.24 Total: -3.07 kcal Total: -76.70 3.44 -73.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735948678.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.162 kcal (2) G-P(sol) polarization free energy of solvation -76.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds