Wall clock time and date at job start Fri Apr 10 2020 14:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86794 * 120.00207 * 2 1 4 4 H 1.48499 * 109.47610 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47094 * 300.00153 * 3 2 1 6 6 H 1.48504 * 109.47018 * 59.99702 * 3 2 1 7 7 C 1.40156 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99966 * 180.02562 * 7 2 1 9 9 C 1.41813 * 120.00169 * 0.27421 * 7 2 1 10 10 O 1.21649 * 119.99924 * 359.73172 * 9 7 2 11 11 O 1.34946 * 120.00127 * 179.72253 * 9 7 2 12 12 C 1.35882 * 117.99765 * 175.08745 * 11 9 7 13 13 C 1.39146 * 119.99892 * 76.92701 * 12 11 9 14 14 C 1.37780 * 120.53676 * 179.97438 * 13 12 11 15 15 C 1.39060 * 120.17746 * 359.97438 * 14 13 12 16 16 O 1.35166 * 132.21582 * 180.02562 * 15 14 13 17 17 C 1.35117 * 111.54578 * 179.97438 * 16 15 14 18 18 C 1.38988 * 132.28719 * 180.02562 * 17 16 15 19 19 C 1.37891 * 120.08963 * 179.97438 * 18 17 16 20 20 C 1.38591 * 120.59795 * 0.04479 * 19 18 17 21 21 C 1.37905 * 120.13459 * 359.94939 * 20 19 18 22 22 C 1.39082 * 119.74217 * 0.02900 * 21 20 19 23 23 C 1.40209 * 119.28084 * 0.02562 * 15 14 13 24 24 C 1.38480 * 119.99865 * 256.65063 * 12 11 9 25 25 H 0.97002 * 119.99717 * 0.02562 * 1 2 3 26 26 H 1.07999 * 119.72758 * 359.97438 * 13 12 11 27 27 H 1.08001 * 119.91123 * 180.02562 * 14 13 12 28 28 H 1.08001 * 119.95878 * 359.97438 * 18 17 16 29 29 H 1.07996 * 119.70210 * 180.02562 * 19 18 17 30 30 H 1.08008 * 119.92923 * 179.97438 * 20 19 18 31 31 H 1.08003 * 120.13151 * 180.02562 * 21 20 19 32 32 H 1.08000 * 120.15864 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.7003 1.3464 0.0006 5 1 1.8815 2.3964 -1.2125 6 1 1.8814 2.3964 1.2125 7 6 2.0070 -1.2138 0.0005 8 1 3.0870 -1.2138 0.0010 9 6 1.2979 -2.4419 -0.0048 10 8 0.0814 -2.4419 -0.0049 11 8 1.9726 -3.6106 -0.0099 12 6 1.2563 -4.7611 0.0878 13 6 0.5717 -5.2507 -1.0202 14 6 -0.1575 -6.4165 -0.9337 15 6 -0.2157 -7.1172 0.2661 16 8 -0.8419 -8.2615 0.6201 17 6 -0.6142 -8.5716 1.9153 18 6 -1.0367 -9.6292 2.7120 19 6 -0.6447 -9.7000 4.0321 20 6 0.1708 -8.7220 4.5792 21 6 0.6001 -7.6653 3.8041 22 6 0.2110 -7.5844 2.4712 23 6 0.4741 -6.6238 1.3825 24 6 1.2123 -5.4494 1.2887 25 1 -0.4850 0.8401 -0.0004 26 1 0.6124 -4.7125 -1.9557 27 1 -0.6847 -6.7876 -1.8002 28 1 -1.6730 -10.3967 2.2966 29 1 -0.9764 -10.5247 4.6453 30 1 0.4710 -8.7879 5.6146 31 1 1.2360 -6.9034 4.2304 32 1 1.7467 -5.0743 2.1490 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771944583.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:37 Heat of formation + Delta-G solvation = -40.176376 kcal Electronic energy + Delta-G solvation = -20394.736164 eV Core-core repulsion = 17058.676755 eV Total energy + Delta-G solvation = -3336.059409 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.072 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.26052 -39.39504 -37.93030 -36.78075 -34.82081 -32.74792 -32.27809 -30.67191 -29.36720 -28.77826 -27.02743 -23.96428 -23.11436 -22.37162 -21.08078 -20.55295 -18.26352 -17.65008 -17.02951 -16.69353 -16.04268 -15.87412 -15.33321 -15.15173 -14.54785 -14.21878 -13.91809 -13.65426 -13.40818 -13.09103 -12.63358 -12.45071 -12.34341 -12.07880 -11.67166 -11.50605 -11.30251 -11.15024 -10.78487 -10.68104 -10.34795 -9.74712 -9.59033 -9.07305 -8.95582 -8.33096 -8.02788 -7.67471 -6.61269 -5.14764 0.74394 1.11071 1.73852 1.94273 2.68291 2.96439 3.05324 3.12128 3.60803 3.78994 3.98361 4.10403 4.41277 4.57423 4.78821 4.83486 4.94930 5.13441 5.21882 5.33680 5.39389 5.57530 5.60429 5.70204 5.86732 6.07520 6.18157 6.21727 6.35008 6.40136 6.52111 6.61476 6.79124 6.87897 7.09523 7.29058 7.86041 8.09331 8.59870 8.66725 10.15207 10.36527 Molecular weight = 282.07amu Principal moments of inertia in cm(-1) A = 0.031568 B = 0.003800 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.774311 B = 7365.860117 C = 7848.157425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.744 5.744 2 C 0.081 3.919 3 Si 0.928 3.072 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.502 4.502 8 H 0.084 0.916 9 C 0.478 3.522 10 O -0.552 6.552 11 O -0.335 6.335 12 C 0.125 3.875 13 C -0.090 4.090 14 C -0.100 4.100 15 C 0.060 3.940 16 O -0.203 6.203 17 C 0.082 3.918 18 C -0.119 4.119 19 C -0.091 4.091 20 C -0.143 4.143 21 C -0.063 4.063 22 C -0.113 4.113 23 C -0.111 4.111 24 C -0.084 4.084 25 H 0.277 0.723 26 H 0.140 0.860 27 H 0.135 0.865 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.536 -13.990 5.086 14.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.142 4.142 3 Si 0.751 3.249 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.534 4.534 8 H 0.102 0.898 9 C 0.341 3.659 10 O -0.446 6.446 11 O -0.255 6.255 12 C 0.081 3.919 13 C -0.108 4.108 14 C -0.119 4.119 15 C 0.014 3.986 16 O -0.108 6.108 17 C 0.036 3.964 18 C -0.137 4.137 19 C -0.109 4.109 20 C -0.162 4.162 21 C -0.081 4.081 22 C -0.114 4.114 23 C -0.112 4.112 24 C -0.102 4.102 25 H 0.088 0.912 26 H 0.158 0.842 27 H 0.153 0.847 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.173 -14.049 4.896 14.879 hybrid contribution 0.258 0.818 0.013 0.858 sum 0.085 -13.231 4.909 14.113 Atomic orbital electron populations 1.70027 1.07451 1.28553 1.31092 1.25891 0.94895 1.01048 0.92387 0.85962 0.80537 0.79764 0.78632 1.18109 1.19622 1.19641 1.19644 0.95082 0.86921 1.51724 0.89769 1.20152 0.86988 0.80880 0.77912 1.90733 1.14439 1.84844 1.54571 1.84722 1.40899 1.12968 1.86924 1.18370 0.93744 0.87982 0.91762 1.21249 0.95334 0.94552 0.99682 1.19734 1.02650 0.95078 0.94392 1.19470 0.96629 0.86649 0.95803 1.83998 1.63762 1.37820 1.25195 1.19600 0.97770 0.96541 0.82486 1.19945 1.03817 0.97029 0.92957 1.20885 0.97381 0.98987 0.93597 1.21005 1.00052 0.94959 1.00138 1.20580 0.98339 0.97993 0.91148 1.19374 1.01728 0.95623 0.94667 1.19022 1.02504 0.97035 0.92621 1.20502 0.98657 0.93782 0.97290 0.91157 0.84190 0.84734 0.85031 0.84813 0.85207 0.85237 0.84981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.03 11.73 55.56 0.65 -20.38 16 2 C 0.08 2.14 5.50 -17.35 -0.10 2.04 16 3 Si 0.93 18.92 29.56 -169.99 -5.02 13.90 16 4 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 6 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.50 -13.96 9.46 -37.50 -0.35 -14.31 16 8 H 0.08 2.17 7.85 -52.49 -0.41 1.76 16 9 C 0.48 13.83 7.62 32.10 0.24 14.08 16 10 O -0.55 -17.48 14.52 -19.38 -0.28 -17.76 16 11 O -0.34 -8.55 9.95 -25.31 -0.25 -8.80 16 12 C 0.12 2.80 5.21 -39.16 -0.20 2.59 16 13 C -0.09 -1.79 9.61 -39.41 -0.38 -2.17 16 14 C -0.10 -1.75 10.05 -39.44 -0.40 -2.15 16 15 C 0.06 1.09 7.34 -38.54 -0.28 0.81 16 16 O -0.20 -3.48 10.58 0.98 0.01 -3.47 16 17 C 0.08 1.29 7.34 -38.58 -0.28 1.00 16 18 C -0.12 -1.41 10.06 -39.43 -0.40 -1.81 16 19 C -0.09 -0.90 10.01 -39.58 -0.40 -1.30 16 20 C -0.14 -1.52 10.04 -39.57 -0.40 -1.92 16 21 C -0.06 -0.83 10.08 -39.39 -0.40 -1.23 16 22 C -0.11 -1.85 6.38 -105.06 -0.67 -2.53 16 23 C -0.11 -2.09 6.38 -105.07 -0.67 -2.76 16 24 C -0.08 -1.70 10.03 -39.20 -0.39 -2.09 16 25 H 0.28 6.97 8.29 -40.82 -0.34 6.63 16 26 H 0.14 2.67 8.06 -52.49 -0.42 2.25 16 27 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 28 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 29 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 30 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 31 H 0.13 1.53 8.06 -52.48 -0.42 1.10 16 32 H 0.13 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 295.32 15.07 4.45 4.45 Total: -1.00 -33.28 295.32 -8.02 -41.31 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -2.51 Total: 2.49 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -5.07 Total: -11.73 kcal Atomic # 7 Polarization: -21.03 SS G_CDS: 0.65 Total: -20.38 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.52 Total: -30.03 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.28 -8.02 -41.31 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771944583.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.129 kcal (2) G-P(sol) polarization free energy of solvation -33.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds