Wall clock time and date at job start Fri Apr 10 2020 14:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30622 * 1 3 3 Si 1.86794 * 120.00207 * 2 1 4 4 H 1.48499 * 109.47610 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47094 * 300.00153 * 3 2 1 6 6 H 1.48504 * 109.47018 * 59.99702 * 3 2 1 7 7 C 1.40156 * 119.99847 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99966 * 180.02562 * 7 2 1 9 9 C 1.41813 * 120.00169 * 0.27421 * 7 2 1 10 10 O 1.21649 * 119.99924 * 359.73172 * 9 7 2 11 11 O 1.34946 * 120.00127 * 179.72253 * 9 7 2 12 12 C 1.35882 * 117.99765 * 175.08745 * 11 9 7 13 13 C 1.39146 * 119.99892 * 76.92701 * 12 11 9 14 14 C 1.37780 * 120.53676 * 179.97438 * 13 12 11 15 15 C 1.39060 * 120.17746 * 359.97438 * 14 13 12 16 16 O 1.35166 * 132.21582 * 180.02562 * 15 14 13 17 17 C 1.35117 * 111.54578 * 179.97438 * 16 15 14 18 18 C 1.38988 * 132.28719 * 180.02562 * 17 16 15 19 19 C 1.37891 * 120.08963 * 179.97438 * 18 17 16 20 20 C 1.38591 * 120.59795 * 0.04479 * 19 18 17 21 21 C 1.37905 * 120.13459 * 359.94939 * 20 19 18 22 22 C 1.39082 * 119.74217 * 0.02900 * 21 20 19 23 23 C 1.40209 * 119.28084 * 0.02562 * 15 14 13 24 24 C 1.38480 * 119.99865 * 256.65063 * 12 11 9 25 25 H 0.97002 * 119.99717 * 0.02562 * 1 2 3 26 26 H 1.07999 * 119.72758 * 359.97438 * 13 12 11 27 27 H 1.08001 * 119.91123 * 180.02562 * 14 13 12 28 28 H 1.08001 * 119.95878 * 359.97438 * 18 17 16 29 29 H 1.07996 * 119.70210 * 180.02562 * 19 18 17 30 30 H 1.08008 * 119.92923 * 179.97438 * 20 19 18 31 31 H 1.08003 * 120.13151 * 180.02562 * 21 20 19 32 32 H 1.08000 * 120.15864 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3062 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 3.7003 1.3464 0.0006 5 1 1.8815 2.3964 -1.2125 6 1 1.8814 2.3964 1.2125 7 6 2.0070 -1.2138 0.0005 8 1 3.0870 -1.2138 0.0010 9 6 1.2979 -2.4419 -0.0048 10 8 0.0814 -2.4419 -0.0049 11 8 1.9726 -3.6106 -0.0099 12 6 1.2563 -4.7611 0.0878 13 6 0.5717 -5.2507 -1.0202 14 6 -0.1575 -6.4165 -0.9337 15 6 -0.2157 -7.1172 0.2661 16 8 -0.8419 -8.2615 0.6201 17 6 -0.6142 -8.5716 1.9153 18 6 -1.0367 -9.6292 2.7120 19 6 -0.6447 -9.7000 4.0321 20 6 0.1708 -8.7220 4.5792 21 6 0.6001 -7.6653 3.8041 22 6 0.2110 -7.5844 2.4712 23 6 0.4741 -6.6238 1.3825 24 6 1.2123 -5.4494 1.2887 25 1 -0.4850 0.8401 -0.0004 26 1 0.6124 -4.7125 -1.9557 27 1 -0.6847 -6.7876 -1.8002 28 1 -1.6730 -10.3967 2.2966 29 1 -0.9764 -10.5247 4.6453 30 1 0.4710 -8.7879 5.6146 31 1 1.2360 -6.9034 4.2304 32 1 1.7467 -5.0743 2.1490 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771944583.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:58:37 Heat of formation + Delta-G solvation = -59.219472 kcal Electronic energy + Delta-G solvation = -20395.561935 eV Core-core repulsion = 17058.676755 eV Total energy + Delta-G solvation = -3336.885179 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 282.072 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.53101 -41.26081 -39.05861 -38.41049 -36.78694 -34.86212 -33.53160 -31.80918 -30.78236 -30.13951 -29.04677 -25.22622 -24.73267 -23.60396 -22.59314 -22.02115 -19.73255 -19.36621 -18.64170 -18.25865 -17.64612 -17.32310 -16.80878 -16.64462 -15.97992 -15.84137 -15.08158 -14.98568 -14.89136 -14.60334 -14.31857 -14.04399 -13.45155 -13.38809 -13.28609 -13.01053 -12.91734 -12.68754 -12.46075 -12.02740 -11.98528 -11.45743 -11.07740 -10.95742 -10.58519 -10.07555 -9.29313 -9.15234 -8.61635 -7.33490 -0.48690 -0.16402 0.43473 0.68144 1.33777 1.37724 1.42776 1.59415 2.08183 2.10840 2.30046 2.69143 2.92512 3.25940 3.30408 3.45813 3.58443 3.89954 3.99236 4.13184 4.19785 4.29502 4.42182 4.44065 4.68232 4.80341 4.87939 4.99833 5.06468 5.20057 5.24756 5.29603 5.35912 5.43215 5.65185 5.78153 6.02807 6.17679 6.51329 6.55905 8.06711 8.33757 Molecular weight = 282.07amu Principal moments of inertia in cm(-1) A = 0.031568 B = 0.003800 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.774311 B = 7365.860117 C = 7848.157425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.029 3.971 3 Si 1.019 2.981 4 H -0.245 1.245 5 H -0.258 1.258 6 H -0.259 1.259 7 C -0.530 4.530 8 H 0.097 0.903 9 C 0.462 3.538 10 O -0.595 6.595 11 O -0.340 6.340 12 C 0.079 3.921 13 C -0.105 4.105 14 C -0.088 4.088 15 C 0.053 3.947 16 O -0.206 6.206 17 C 0.055 3.945 18 C -0.118 4.118 19 C -0.072 4.072 20 C -0.130 4.130 21 C -0.079 4.079 22 C -0.147 4.147 23 C -0.120 4.120 24 C -0.094 4.094 25 H 0.289 0.711 26 H 0.140 0.860 27 H 0.171 0.829 28 H 0.160 0.840 29 H 0.182 0.818 30 H 0.168 0.832 31 H 0.135 0.865 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.508 -15.457 6.906 16.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.190 4.190 3 Si 0.836 3.164 4 H -0.168 1.168 5 H -0.182 1.182 6 H -0.183 1.183 7 C -0.561 4.561 8 H 0.115 0.885 9 C 0.327 3.673 10 O -0.493 6.493 11 O -0.259 6.259 12 C 0.037 3.963 13 C -0.123 4.123 14 C -0.106 4.106 15 C 0.008 3.992 16 O -0.112 6.112 17 C 0.010 3.990 18 C -0.136 4.136 19 C -0.089 4.089 20 C -0.147 4.147 21 C -0.097 4.097 22 C -0.148 4.148 23 C -0.121 4.121 24 C -0.113 4.113 25 H 0.100 0.900 26 H 0.158 0.842 27 H 0.189 0.811 28 H 0.178 0.822 29 H 0.199 0.801 30 H 0.186 0.814 31 H 0.153 0.847 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.185 -15.565 6.723 16.956 hybrid contribution 0.187 0.977 -0.364 1.059 sum 0.002 -14.588 6.359 15.914 Atomic orbital electron populations 1.70132 1.09841 1.30652 1.31280 1.27272 0.95801 1.05241 0.90641 0.84657 0.79120 0.73263 0.79398 1.16797 1.18228 1.18332 1.20238 0.96032 0.87643 1.52196 0.88463 1.20564 0.86784 0.82228 0.77739 1.90671 1.15966 1.85972 1.56661 1.84643 1.41049 1.13361 1.86835 1.18760 0.96200 0.87600 0.93736 1.21279 0.96147 0.95799 0.99106 1.19990 1.01371 0.93761 0.95488 1.19685 0.96433 0.87196 0.95905 1.83972 1.63687 1.37003 1.26491 1.20189 0.98927 0.97933 0.81979 1.20487 1.03510 0.96234 0.93371 1.21521 0.95105 0.99374 0.92909 1.21521 0.98411 0.93342 1.01451 1.20888 0.98931 0.99532 0.90312 1.19564 1.03812 0.95735 0.95712 1.19344 1.01611 0.96703 0.94430 1.20522 0.99408 0.94625 0.96718 0.90021 0.84216 0.81140 0.82248 0.80072 0.81437 0.84686 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -46.10 11.73 21.85 0.26 -45.84 16 2 C 0.03 1.57 5.50 85.34 0.47 2.04 16 3 Si 1.02 38.53 29.56 68.60 2.03 40.56 16 4 H -0.25 -8.68 7.11 99.48 0.71 -7.98 16 5 H -0.26 -9.16 7.11 99.48 0.71 -8.46 16 6 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 7 C -0.53 -30.58 9.46 23.62 0.22 -30.35 16 8 H 0.10 5.14 7.85 -2.91 -0.02 5.12 16 9 C 0.46 28.36 7.62 68.70 0.52 28.88 16 10 O -0.59 -40.05 14.52 19.35 0.28 -39.77 16 11 O -0.34 -18.59 9.95 -1.87 -0.02 -18.61 16 12 C 0.08 3.84 5.21 22.55 0.12 3.96 16 13 C -0.10 -4.47 9.61 22.38 0.22 -4.26 16 14 C -0.09 -3.18 10.05 22.36 0.22 -2.95 16 15 C 0.05 2.02 7.34 22.95 0.17 2.18 16 16 O -0.21 -7.04 10.58 -19.40 -0.21 -7.24 16 17 C 0.06 1.66 7.34 22.92 0.17 1.83 16 18 C -0.12 -2.39 10.06 22.37 0.22 -2.16 16 19 C -0.07 -1.06 10.01 22.27 0.22 -0.83 16 20 C -0.13 -2.21 10.04 22.28 0.22 -1.98 16 21 C -0.08 -1.99 10.08 22.39 0.23 -1.76 16 22 C -0.15 -4.84 6.38 -20.15 -0.13 -4.97 16 23 C -0.12 -4.73 6.38 -20.15 -0.13 -4.85 16 24 C -0.09 -4.10 10.03 22.52 0.23 -3.88 16 25 H 0.29 14.81 8.29 -92.71 -0.77 14.04 16 26 H 0.14 5.77 8.06 -2.91 -0.02 5.75 16 27 H 0.17 4.74 8.06 -2.91 -0.02 4.72 16 28 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 29 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 30 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 31 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 32 H 0.13 5.50 8.06 -2.91 -0.02 5.48 16 Total: -1.00 -78.34 295.32 6.48 -71.86 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: 1.17 Total: 18.16 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 2.98 Total: -19.12 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.26 Total: -45.84 kcal Atomic # 8 Polarization: -65.68 SS G_CDS: 0.06 Total: -65.62 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -78.34 6.48 -71.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771944583.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.638 kcal (2) G-P(sol) polarization free energy of solvation -78.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds