Wall clock time and date at job start Fri Apr 10 2020 14:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86798 * 119.99975 * 2 1 4 4 H 1.48504 * 109.47079 * 270.00569 * 3 2 1 5 5 H 1.48502 * 109.47157 * 30.00097 * 3 2 1 6 6 H 1.48493 * 109.47340 * 150.00058 * 3 2 1 7 7 C 1.38796 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99924 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00073 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47397 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47697 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47776 * 179.97438 * 12 11 10 14 14 C 1.34741 * 117.00330 * 179.97438 * 13 12 11 15 15 O 1.21504 * 120.00151 * 359.97438 * 14 13 12 16 16 C 1.47470 * 120.00223 * 180.02562 * 14 13 12 17 17 C 1.39789 * 120.09555 * 180.02562 * 16 14 13 18 18 C 1.37685 * 119.90744 * 180.02562 * 17 16 14 19 19 C 1.39009 * 120.08911 * 0.02562 * 18 17 16 20 20 O 1.35699 * 119.90299 * 180.02562 * 19 18 17 21 21 C 1.39014 * 120.19364 * 0.27164 * 19 18 17 22 22 C 1.37685 * 120.08777 * 359.44932 * 21 19 18 23 23 H 0.96999 * 119.99819 * 359.97438 * 1 2 3 24 24 H 1.09009 * 109.47276 * 59.99966 * 10 9 7 25 25 H 1.08996 * 109.47273 * 299.99972 * 10 9 7 26 26 H 1.09003 * 109.47211 * 59.99556 * 11 10 9 27 27 H 1.09004 * 109.47030 * 299.99992 * 11 10 9 28 28 H 1.09003 * 109.47255 * 59.99457 * 12 11 10 29 29 H 1.09004 * 109.46771 * 300.00024 * 12 11 10 30 30 H 1.08000 * 120.04494 * 359.97438 * 17 16 14 31 31 H 1.07995 * 119.95421 * 179.97438 * 18 17 16 32 32 H 0.96700 * 114.00288 * 89.99839 * 20 19 18 33 33 H 1.07998 * 119.95536 * 179.72979 * 21 19 18 34 34 H 1.08000 * 120.04821 * 180.24995 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9795 -5.3242 0.0001 12 6 3.1515 -6.3077 0.0008 13 8 2.6424 -7.6675 0.0020 14 6 3.5522 -8.6613 0.0021 15 8 4.7386 -8.3990 0.0008 16 6 3.1082 -10.0676 0.0028 17 6 4.0504 -11.1002 0.0035 18 6 3.6315 -12.4118 0.0036 19 6 2.2737 -12.7097 0.0024 20 8 1.8650 -14.0037 0.0030 21 6 1.3333 -11.6860 -0.0045 22 6 1.7437 -10.3717 0.0012 23 1 -0.4850 0.8401 0.0004 24 1 3.1246 -3.7313 0.8895 25 1 3.1245 -3.7313 -0.8905 26 1 1.3706 -5.4847 -0.8896 27 1 1.3711 -5.4840 0.8904 28 1 3.7601 -6.1472 0.8907 29 1 3.7602 -6.1480 -0.8893 30 1 5.1055 -10.8695 0.0031 31 1 4.3588 -13.2101 0.0037 32 1 1.7457 -14.3781 0.8865 33 1 0.2794 -11.9218 -0.0098 34 1 1.0125 -9.5769 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805336886.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:48 Heat of formation + Delta-G solvation = -119.344880 kcal Electronic energy + Delta-G solvation = -18030.387771 eV Core-core repulsion = 14826.339310 eV Total energy + Delta-G solvation = -3204.048461 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.77469 -39.70827 -37.24302 -36.51416 -33.53922 -32.45390 -31.54426 -30.66590 -26.72592 -25.51392 -24.08090 -23.18694 -21.40450 -21.15167 -18.95087 -18.19625 -17.41989 -17.13450 -16.62675 -15.90736 -15.79323 -15.00377 -14.82721 -14.69456 -14.38240 -13.97398 -13.61245 -13.12028 -12.93571 -12.71338 -12.46930 -12.38965 -12.11476 -11.37184 -11.15842 -11.00876 -10.97691 -10.91855 -10.73696 -10.60851 -10.31070 -9.65067 -9.53370 -9.19168 -9.08639 -8.37195 -6.57761 -6.25834 -3.96969 0.22635 0.87919 2.24176 2.48670 3.20715 3.21463 3.27220 3.28220 3.52717 3.66833 4.18971 4.36591 4.47009 4.54336 4.83863 4.98874 5.08887 5.11520 5.16802 5.24261 5.36089 5.46390 5.53122 5.66064 5.75851 5.83173 5.87705 5.96692 6.13878 6.21038 6.38602 6.43187 6.65093 7.09881 7.58137 7.63050 8.33865 9.20603 10.82311 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.052699 B = 0.002345 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.187024 B =11935.239961 C =12438.102869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.920 3.080 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.518 4.518 8 H 0.074 0.926 9 S -0.124 6.124 10 C -0.114 4.114 11 C -0.098 4.098 12 C 0.074 3.926 13 O -0.351 6.351 14 C 0.507 3.493 15 O -0.508 6.508 16 C -0.134 4.134 17 C -0.038 4.038 18 C -0.160 4.160 19 C 0.139 3.861 20 O -0.498 6.498 21 C -0.159 4.159 22 C -0.042 4.042 23 H 0.268 0.732 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.397 0.603 33 H 0.139 0.861 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.185 -25.471 1.697 25.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.138 4.138 3 Si 0.746 3.254 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.666 4.666 8 H 0.092 0.908 9 S 0.104 5.896 10 C -0.263 4.263 11 C -0.136 4.136 12 C -0.001 4.001 13 O -0.267 6.267 14 C 0.352 3.648 15 O -0.398 6.398 16 C -0.135 4.135 17 C -0.057 4.057 18 C -0.178 4.178 19 C 0.095 3.905 20 O -0.310 6.310 21 C -0.178 4.178 22 C -0.060 4.060 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.160 0.840 31 H 0.156 0.844 32 H 0.254 0.746 33 H 0.157 0.843 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 3.256 -25.348 1.096 25.580 hybrid contribution 1.966 1.289 0.476 2.399 sum 5.223 -24.060 1.571 24.670 Atomic orbital electron populations 1.70019 1.05922 1.27418 1.47129 1.25024 0.95109 0.99143 0.94528 0.86141 0.79433 0.81418 0.78399 1.20235 1.20734 1.19660 1.22694 0.94592 0.90654 1.58677 0.90829 1.84647 1.08793 0.99257 1.96885 1.23179 1.03449 0.96303 1.03378 1.21290 0.96424 0.91566 1.04347 1.23311 0.97854 0.76217 1.02752 1.86513 1.39664 1.16964 1.83564 1.21017 0.84262 0.86479 0.73018 1.90844 1.17991 1.85024 1.45890 1.19234 0.94568 0.90021 1.09691 1.21175 1.00203 0.90850 0.93426 1.21380 0.95441 0.96875 1.04139 1.18816 0.91483 0.83916 0.96312 1.84749 1.89144 1.23163 1.33913 1.21465 1.00542 0.92103 1.03679 1.21468 0.94871 0.96872 0.92826 0.92244 0.91709 0.91699 0.90293 0.90308 0.91010 0.91000 0.83953 0.84386 0.74598 0.84325 0.83510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.80 13.22 55.49 0.73 -25.06 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.52 -14.75 9.50 30.94 0.29 -14.45 16 8 H 0.07 2.03 7.80 -52.48 -0.41 1.62 16 9 S -0.12 -3.20 21.44 -107.50 -2.30 -5.51 16 10 C -0.11 -2.26 5.67 37.16 0.21 -2.05 16 11 C -0.10 -1.57 5.60 -26.73 -0.15 -1.72 16 12 C 0.07 1.06 5.48 37.15 0.20 1.26 16 13 O -0.35 -4.82 9.46 -40.60 -0.38 -5.20 16 14 C 0.51 6.83 7.89 34.49 0.27 7.10 16 15 O -0.51 -8.01 16.13 -19.27 -0.31 -8.32 16 16 C -0.13 -1.43 5.87 -104.97 -0.62 -2.05 16 17 C -0.04 -0.35 9.59 -39.20 -0.38 -0.73 16 18 C -0.16 -1.20 9.97 -39.50 -0.39 -1.59 16 19 C 0.14 1.04 6.71 -39.01 -0.26 0.78 16 20 O -0.50 -3.06 13.49 -18.80 -0.25 -3.31 16 21 C -0.16 -1.21 9.97 -39.50 -0.39 -1.60 16 22 C -0.04 -0.38 9.61 -39.20 -0.38 -0.75 16 23 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.06 1.26 8.14 -51.91 -0.42 0.84 16 25 H 0.06 1.26 8.14 -51.92 -0.42 0.84 16 26 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 27 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.14 1.24 7.64 -52.49 -0.40 0.84 16 31 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 32 H 0.40 0.46 9.06 45.56 0.41 0.88 16 33 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 34 H 0.15 1.21 7.60 -52.49 -0.40 0.81 16 LS Contribution 321.33 15.07 4.84 4.84 Total: -1.00 -33.66 321.33 -7.70 -41.36 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -3.31 Total: -1.34 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -1.68 Total: -13.89 kcal Atomic # 7 Polarization: -25.80 SS G_CDS: 0.73 Total: -25.06 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.95 Total: -16.84 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -3.20 SS G_CDS: -2.30 Total: -5.51 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.66 -7.70 -41.36 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805336886.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.984 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds