Wall clock time and date at job start Fri Apr 10 2020 14:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86798 * 119.99975 * 2 1 4 4 H 1.48504 * 109.47079 * 270.00569 * 3 2 1 5 5 H 1.48502 * 109.47157 * 30.00097 * 3 2 1 6 6 H 1.48493 * 109.47340 * 150.00058 * 3 2 1 7 7 C 1.38796 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99924 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00073 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47397 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47697 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47776 * 179.97438 * 12 11 10 14 14 C 1.34741 * 117.00330 * 179.97438 * 13 12 11 15 15 O 1.21504 * 120.00151 * 359.97438 * 14 13 12 16 16 C 1.47470 * 120.00223 * 180.02562 * 14 13 12 17 17 C 1.39789 * 120.09555 * 180.02562 * 16 14 13 18 18 C 1.37685 * 119.90744 * 180.02562 * 17 16 14 19 19 C 1.39009 * 120.08911 * 0.02562 * 18 17 16 20 20 O 1.35699 * 119.90299 * 180.02562 * 19 18 17 21 21 C 1.39014 * 120.19364 * 0.27164 * 19 18 17 22 22 C 1.37685 * 120.08777 * 359.44932 * 21 19 18 23 23 H 0.96999 * 119.99819 * 359.97438 * 1 2 3 24 24 H 1.09009 * 109.47276 * 59.99966 * 10 9 7 25 25 H 1.08996 * 109.47273 * 299.99972 * 10 9 7 26 26 H 1.09003 * 109.47211 * 59.99556 * 11 10 9 27 27 H 1.09004 * 109.47030 * 299.99992 * 11 10 9 28 28 H 1.09003 * 109.47255 * 59.99457 * 12 11 10 29 29 H 1.09004 * 109.46771 * 300.00024 * 12 11 10 30 30 H 1.08000 * 120.04494 * 359.97438 * 17 16 14 31 31 H 1.07995 * 119.95421 * 179.97438 * 18 17 16 32 32 H 0.96700 * 114.00288 * 89.99839 * 20 19 18 33 33 H 1.07998 * 119.95536 * 179.72979 * 21 19 18 34 34 H 1.08000 * 120.04821 * 180.24995 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9795 -5.3242 0.0001 12 6 3.1515 -6.3077 0.0008 13 8 2.6424 -7.6675 0.0020 14 6 3.5522 -8.6613 0.0021 15 8 4.7386 -8.3990 0.0008 16 6 3.1082 -10.0676 0.0028 17 6 4.0504 -11.1002 0.0035 18 6 3.6315 -12.4118 0.0036 19 6 2.2737 -12.7097 0.0024 20 8 1.8650 -14.0037 0.0030 21 6 1.3333 -11.6860 -0.0045 22 6 1.7437 -10.3717 0.0012 23 1 -0.4850 0.8401 0.0004 24 1 3.1246 -3.7313 0.8895 25 1 3.1245 -3.7313 -0.8905 26 1 1.3706 -5.4847 -0.8896 27 1 1.3711 -5.4840 0.8904 28 1 3.7601 -6.1472 0.8907 29 1 3.7602 -6.1480 -0.8893 30 1 5.1055 -10.8695 0.0031 31 1 4.3588 -13.2101 0.0037 32 1 1.7457 -14.3781 0.8865 33 1 0.2794 -11.9218 -0.0098 34 1 1.0125 -9.5769 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805336886.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 14:59:48 Heat of formation + Delta-G solvation = -140.604550 kcal Electronic energy + Delta-G solvation = -18031.309660 eV Core-core repulsion = 14826.339310 eV Total energy + Delta-G solvation = -3204.970350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 282.076 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.71546 -40.42208 -38.05725 -37.40973 -34.92505 -34.58647 -32.17342 -31.38511 -28.21486 -27.46752 -24.96072 -23.82473 -22.75666 -22.05157 -19.63157 -19.47668 -18.99656 -18.15508 -17.76532 -16.90212 -16.55259 -16.45492 -16.16561 -15.99984 -15.56209 -14.99030 -14.56890 -14.37916 -14.23377 -13.83299 -13.63767 -13.20091 -13.16789 -13.01782 -12.95074 -12.63811 -12.41301 -12.40765 -11.82304 -11.54500 -11.51180 -11.44639 -11.15344 -10.36926 -10.15109 -9.84236 -8.68565 -8.38608 -6.15100 -0.49402 0.26678 1.25474 1.35795 1.39515 1.40669 1.51222 1.82686 2.26589 2.59384 2.95935 3.15098 3.27690 3.54717 3.80397 3.83719 3.89923 3.96621 4.13296 4.22781 4.31650 4.33754 4.49674 4.67107 4.68641 4.95036 5.00415 5.00741 5.14121 5.22130 5.30344 5.36819 5.39635 5.64170 6.17356 6.58500 6.79137 7.03940 8.70699 Molecular weight = 282.08amu Principal moments of inertia in cm(-1) A = 0.052699 B = 0.002345 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.187024 B =11935.239961 C =12438.102869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.015 3.985 3 Si 0.994 3.006 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.264 1.264 7 C -0.540 4.540 8 H 0.074 0.926 9 S -0.184 6.184 10 C -0.092 4.092 11 C -0.085 4.085 12 C 0.081 3.919 13 O -0.351 6.351 14 C 0.508 3.492 15 O -0.538 6.538 16 C -0.159 4.159 17 C -0.042 4.042 18 C -0.159 4.159 19 C 0.151 3.849 20 O -0.504 6.504 21 C -0.161 4.161 22 C -0.043 4.043 23 H 0.272 0.728 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.141 0.859 31 H 0.160 0.840 32 H 0.420 0.580 33 H 0.159 0.841 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.726 -26.861 1.801 27.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.190 4.190 3 Si 0.816 3.184 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.188 1.188 7 C -0.688 4.688 8 H 0.092 0.908 9 S 0.044 5.956 10 C -0.241 4.241 11 C -0.124 4.124 12 C 0.005 3.995 13 O -0.267 6.267 14 C 0.355 3.645 15 O -0.430 6.430 16 C -0.160 4.160 17 C -0.060 4.060 18 C -0.177 4.177 19 C 0.106 3.894 20 O -0.320 6.320 21 C -0.179 4.179 22 C -0.061 4.061 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.099 0.901 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.159 0.841 31 H 0.178 0.822 32 H 0.282 0.718 33 H 0.176 0.824 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.783 -26.769 1.216 27.062 hybrid contribution 1.769 1.503 0.453 2.365 sum 5.552 -25.266 1.669 25.923 Atomic orbital electron populations 1.70146 1.07624 1.28617 1.47872 1.26066 0.96064 1.03110 0.93744 0.85007 0.78158 0.76370 0.78823 1.19303 1.19886 1.18784 1.23053 0.94841 0.91934 1.58977 0.90789 1.84616 1.13062 1.00813 1.97061 1.23068 1.00809 0.96525 1.03692 1.21104 0.96951 0.89726 1.04597 1.23074 0.96772 0.76525 1.03092 1.86500 1.39825 1.16687 1.83699 1.21543 0.83799 0.87245 0.71927 1.90821 1.19058 1.85454 1.47669 1.19212 0.95738 0.88520 1.12540 1.21250 0.99994 0.91308 0.93479 1.21585 0.96138 0.96581 1.03393 1.18903 0.91407 0.84516 0.94603 1.84694 1.88958 1.22285 1.36026 1.21672 1.01696 0.91439 1.03097 1.21536 0.94144 0.97795 0.92643 0.91898 0.91315 0.91336 0.90123 0.90058 0.90685 0.90769 0.84101 0.82249 0.71838 0.82377 0.83218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.37 13.22 21.65 0.29 -54.08 16 2 C 0.02 0.86 5.49 84.86 0.47 1.33 16 3 Si 0.99 43.81 29.55 68.60 2.03 45.84 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.54 -31.02 9.50 67.95 0.65 -30.37 16 8 H 0.07 4.09 7.80 -2.91 -0.02 4.07 16 9 S -0.18 -9.67 21.44 -56.49 -1.21 -10.88 16 10 C -0.09 -3.62 5.67 71.98 0.41 -3.21 16 11 C -0.09 -2.69 5.60 30.59 0.17 -2.52 16 12 C 0.08 2.26 5.48 71.98 0.39 2.66 16 13 O -0.35 -9.49 9.46 -56.51 -0.53 -10.02 16 14 C 0.51 13.62 7.89 70.26 0.55 14.18 16 15 O -0.54 -17.10 16.13 19.82 0.32 -16.78 16 16 C -0.16 -3.31 5.87 -20.09 -0.12 -3.42 16 17 C -0.04 -0.73 9.59 22.51 0.22 -0.51 16 18 C -0.16 -2.04 9.97 22.32 0.22 -1.81 16 19 C 0.15 1.86 6.71 22.64 0.15 2.01 16 20 O -0.50 -4.57 13.49 -90.19 -1.22 -5.79 16 21 C -0.16 -2.08 9.97 22.33 0.22 -1.86 16 22 C -0.04 -0.72 9.61 22.52 0.22 -0.50 16 23 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 24 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 25 H 0.07 2.64 8.14 -2.40 -0.02 2.62 16 26 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 28 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.14 2.41 7.64 -2.91 -0.02 2.39 16 31 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 32 H 0.42 -0.45 9.06 -74.06 -0.67 -1.13 16 33 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 34 H 0.15 2.33 7.60 -2.91 -0.02 2.30 16 Total: -1.00 -72.42 321.33 3.67 -68.75 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.45 Total: 7.00 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 3.55 Total: -24.04 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.29 Total: -54.08 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -1.43 Total: -32.59 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: -9.67 SS G_CDS: -1.21 Total: -10.88 kcal Total: -72.42 3.67 -68.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805336886.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.857 kcal (2) G-P(sol) polarization free energy of solvation -72.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds